Wall clock time and date at job start Tue Mar 31 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37846 * 119.78280 * 2 1 4 4 C 1.38346 * 119.93795 * 179.76744 * 3 2 1 5 5 Br 1.89103 * 120.06264 * 180.17308 * 4 3 2 6 6 C 1.38168 * 119.87160 * 0.14929 * 4 3 2 7 7 C 1.38569 * 120.47715 * 359.90930 * 6 4 3 8 8 C 1.38413 * 119.87202 * 359.83978 * 7 6 4 9 9 N 1.39457 * 122.93661 * 180.79498 * 8 7 6 10 10 C 1.46891 * 111.00405 * 105.14613 * 9 8 7 11 11 C 1.50698 * 109.47402 * 157.07318 * 10 9 8 12 12 O 1.21289 * 120.00168 * 0.02562 * 11 10 9 13 13 N 1.34786 * 120.00164 * 180.02562 * 11 10 9 14 14 C 1.37095 * 120.00070 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99627 * 359.97438 * 14 13 11 16 16 C 1.38942 * 120.00010 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00187 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00217 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47443 * 89.99269 * 18 16 14 20 20 H 1.48497 * 109.47403 * 209.99775 * 18 16 14 21 21 H 1.48502 * 109.47121 * 329.99391 * 18 16 14 22 22 C 1.46435 * 113.11241 * 339.60987 * 9 8 7 23 23 C 1.53379 * 108.65852 * 53.44177 * 22 9 8 24 24 C 1.50803 * 118.12413 * 179.63740 * 7 6 4 25 25 H 1.09000 * 109.47388 * 84.40139 * 1 2 3 26 26 H 1.08998 * 109.47175 * 204.40065 * 1 2 3 27 27 H 1.08998 * 109.47401 * 324.40250 * 1 2 3 28 28 H 1.08000 * 120.03039 * 359.74418 * 3 2 1 29 29 H 1.07997 * 119.76150 * 179.89073 * 6 4 3 30 30 H 1.09003 * 109.47245 * 277.08039 * 10 9 8 31 31 H 1.09007 * 109.46654 * 37.07635 * 10 9 8 32 32 H 0.96996 * 119.99371 * 0.02562 * 13 11 10 33 33 H 0.97000 * 120.00481 * 180.02562 * 17 16 14 34 34 H 1.09000 * 109.60797 * 293.68290 * 22 9 8 35 35 H 1.09002 * 109.74072 * 173.27572 * 22 9 8 36 36 H 1.09002 * 109.76405 * 172.16567 * 23 22 9 37 37 H 1.08997 * 109.76217 * 51.39249 * 23 22 9 38 38 H 1.09010 * 109.43821 * 284.47255 * 24 7 6 39 39 H 1.09001 * 109.43495 * 44.34665 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1964 0.0000 4 6 3.5752 1.2001 0.0049 5 35 4.5180 2.8393 0.0098 6 6 4.2666 0.0039 0.0066 7 6 3.5843 -1.2022 0.0054 8 6 2.2002 -1.2113 0.0058 9 7 1.4497 -2.3866 0.0208 10 6 0.8646 -2.6207 1.3477 11 6 -0.3401 -3.5163 1.2147 12 8 -0.6778 -3.9203 0.1221 13 7 -1.0423 -3.8684 2.3099 14 6 -2.1379 -4.6836 2.1890 15 1 -2.4385 -5.0433 1.2160 16 6 -2.8621 -5.0461 3.3179 17 7 -2.4967 -4.6080 4.5018 18 14 -4.3554 -6.1562 3.1531 19 1 -3.9332 -7.5749 3.2728 20 1 -5.3302 -5.8375 4.2270 21 1 -4.9900 -5.9388 1.8282 22 6 2.2042 -3.5563 -0.4337 23 6 3.4969 -3.6552 0.3858 24 6 4.3919 -2.4757 -0.0011 25 1 -0.3634 0.1003 -1.0227 26 1 -0.3633 -0.9358 0.4245 27 1 -0.3634 0.8356 0.5982 28 1 1.6487 2.1299 -0.0042 29 1 5.3465 0.0089 0.0086 30 1 1.6033 -3.0983 1.9914 31 1 0.5631 -1.6687 1.7849 32 1 -0.7725 -3.5450 3.1837 33 1 -3.0020 -4.8614 5.2900 34 1 2.4485 -3.4461 -1.4903 35 1 1.6090 -4.4578 -0.2882 36 1 4.0051 -4.5930 0.1609 37 1 3.2635 -3.6076 1.4495 38 1 4.7998 -2.6416 -0.9983 39 1 5.2093 -2.3905 0.7150 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109747185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:42 Heat of formation + Delta-G solvation = -4.869236 kcal Electronic energy + Delta-G solvation = -23135.623464 eV Core-core repulsion = 19703.006114 eV Total energy + Delta-G solvation = -3432.617350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 352.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88307 -38.26907 -36.79906 -34.57868 -33.88546 -32.05829 -31.28089 -30.86234 -29.21562 -28.19586 -26.42884 -24.92135 -23.75002 -23.06100 -20.92171 -19.90006 -18.89708 -17.87367 -16.87984 -16.50723 -15.73105 -15.49792 -14.79800 -14.52492 -14.34937 -14.26454 -13.79588 -13.63985 -13.37347 -13.20927 -12.81395 -12.71876 -12.50176 -12.31847 -12.00540 -11.63009 -11.60164 -11.49522 -11.19646 -11.04181 -10.80633 -10.59055 -10.49403 -10.41942 -10.34782 -10.25367 -9.53104 -9.25726 -8.68209 -8.32581 -8.00729 -7.68000 -6.45244 -3.86366 1.06758 1.23395 1.57356 3.15120 3.24552 3.29839 3.43563 3.79892 3.86226 4.18317 4.53825 4.68952 4.85194 4.91721 4.99304 5.08657 5.16858 5.19670 5.32832 5.38701 5.57037 5.60091 5.66310 5.72557 5.74273 5.82801 5.88092 5.91649 6.06015 6.10965 6.15986 6.22249 6.27323 6.37515 6.56443 6.69664 7.08819 7.50129 7.52065 8.01435 8.56745 9.14026 9.49238 10.00410 10.72284 Molecular weight = 352.05amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.002605 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.528842 B =10747.059292 C =11442.009153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.084 4.084 4 C -0.105 4.105 5 Br -0.064 7.064 6 C -0.081 4.081 7 C -0.115 4.115 8 C 0.137 3.863 9 N -0.470 5.470 10 C 0.044 3.956 11 C 0.442 3.558 12 O -0.574 6.574 13 N -0.562 5.562 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.929 3.071 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.061 3.939 23 C -0.162 4.162 24 C -0.075 4.075 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.392 0.608 33 H 0.272 0.728 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.027 12.253 -6.036 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.104 4.104 4 C -0.184 4.184 5 Br 0.021 6.979 6 C -0.101 4.101 7 C -0.119 4.119 8 C 0.039 3.961 9 N -0.184 5.184 10 C -0.084 4.084 11 C 0.227 3.773 12 O -0.458 6.458 13 N -0.199 5.199 14 C -0.428 4.428 15 H 0.121 0.879 16 C -0.178 4.178 17 N -0.542 5.542 18 Si 0.756 3.244 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.066 4.066 23 C -0.201 4.201 24 C -0.112 4.112 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.225 0.775 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.621 12.554 -6.896 21.194 hybrid contribution -0.095 -0.703 1.029 1.249 sum 15.526 11.852 -5.867 20.395 Atomic orbital electron populations 1.20877 0.89792 1.03818 1.02821 1.19891 0.96897 0.90807 1.00469 1.20779 0.91800 0.98183 0.99664 1.21496 0.94586 0.91079 1.11279 1.96652 1.75570 1.27742 1.97949 1.20808 0.99618 0.90115 0.99608 1.19929 0.93101 0.95150 1.03754 1.18593 0.89735 0.90821 0.96955 1.58020 1.33357 1.01626 1.25435 1.22097 0.96998 1.01201 0.88091 1.19641 0.86143 0.86016 0.85544 1.90535 1.70656 1.58367 1.26202 1.41855 1.26107 1.44165 1.07808 1.19686 1.03520 1.24148 0.95493 0.87859 1.25256 0.99513 0.98421 0.94654 1.69609 1.40968 1.45282 0.98317 0.85866 0.80582 0.79778 0.78135 1.20425 1.20916 1.19374 1.22253 0.92084 0.93410 0.98899 1.22264 0.97958 0.98481 1.01389 1.20514 0.97265 0.91179 1.02254 0.90869 0.89441 0.91964 0.85088 0.85476 0.91921 0.88810 0.77509 0.91825 0.90368 0.88365 0.90337 0.91174 0.90380 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.37 36.01 0.34 -1.31 16 2 C -0.08 -1.09 5.58 -104.27 -0.58 -1.67 16 3 C -0.08 -1.05 9.44 -39.68 -0.37 -1.42 16 4 C -0.10 -1.26 6.22 -39.57 -0.25 -1.50 16 5 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 16 6 C -0.08 -0.95 9.37 -39.48 -0.37 -1.32 16 7 C -0.12 -1.46 5.74 -104.39 -0.60 -2.06 16 8 C 0.14 2.00 5.08 -83.83 -0.43 1.57 16 9 N -0.47 -7.66 3.40 -172.64 -0.59 -8.25 16 10 C 0.04 0.77 4.20 -4.98 -0.02 0.75 16 11 C 0.44 9.91 7.16 -10.98 -0.08 9.83 16 12 O -0.57 -14.78 14.87 5.55 0.08 -14.70 16 13 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 14 C -0.30 -8.08 9.68 -14.94 -0.14 -8.22 16 15 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 16 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 17 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 18 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.06 0.90 5.49 -3.88 -0.02 0.88 16 23 C -0.16 -1.91 6.02 -26.52 -0.16 -2.07 16 24 C -0.08 -0.79 5.81 -27.82 -0.16 -0.95 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.47 4.81 -51.93 -0.25 1.22 16 27 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.06 1.00 6.15 -51.93 -0.32 0.68 16 31 H 0.09 1.53 6.09 -51.93 -0.32 1.21 16 32 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.10 1.70 6.77 -51.93 -0.35 1.35 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.88 6.30 -51.93 -0.33 0.56 16 38 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -29.14 334.27 -9.84 -38.98 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.78 Total: 10.29 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.94 Total: -6.98 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.08 Total: -45.26 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.14 -9.84 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109747185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.107 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds