Wall clock time and date at job start Tue Mar 31 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37846 * 119.78280 * 2 1 4 4 C 1.38346 * 119.93795 * 179.76744 * 3 2 1 5 5 Br 1.89103 * 120.06264 * 180.17308 * 4 3 2 6 6 C 1.38168 * 119.87160 * 0.14929 * 4 3 2 7 7 C 1.38569 * 120.47715 * 359.90930 * 6 4 3 8 8 C 1.38413 * 119.87202 * 359.83978 * 7 6 4 9 9 N 1.39457 * 122.93661 * 180.79498 * 8 7 6 10 10 C 1.46891 * 111.00405 * 105.14613 * 9 8 7 11 11 C 1.50698 * 109.47402 * 157.07318 * 10 9 8 12 12 O 1.21289 * 120.00168 * 0.02562 * 11 10 9 13 13 N 1.34786 * 120.00164 * 180.02562 * 11 10 9 14 14 C 1.37095 * 120.00070 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99627 * 359.97438 * 14 13 11 16 16 C 1.38942 * 120.00010 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00187 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00217 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47443 * 89.99269 * 18 16 14 20 20 H 1.48497 * 109.47403 * 209.99775 * 18 16 14 21 21 H 1.48502 * 109.47121 * 329.99391 * 18 16 14 22 22 C 1.46435 * 113.11241 * 339.60987 * 9 8 7 23 23 C 1.53379 * 108.65852 * 53.44177 * 22 9 8 24 24 C 1.50803 * 118.12413 * 179.63740 * 7 6 4 25 25 H 1.09000 * 109.47388 * 84.40139 * 1 2 3 26 26 H 1.08998 * 109.47175 * 204.40065 * 1 2 3 27 27 H 1.08998 * 109.47401 * 324.40250 * 1 2 3 28 28 H 1.08000 * 120.03039 * 359.74418 * 3 2 1 29 29 H 1.07997 * 119.76150 * 179.89073 * 6 4 3 30 30 H 1.09003 * 109.47245 * 277.08039 * 10 9 8 31 31 H 1.09007 * 109.46654 * 37.07635 * 10 9 8 32 32 H 0.96996 * 119.99371 * 0.02562 * 13 11 10 33 33 H 0.97000 * 120.00481 * 180.02562 * 17 16 14 34 34 H 1.09000 * 109.60797 * 293.68290 * 22 9 8 35 35 H 1.09002 * 109.74072 * 173.27572 * 22 9 8 36 36 H 1.09002 * 109.76405 * 172.16567 * 23 22 9 37 37 H 1.08997 * 109.76217 * 51.39249 * 23 22 9 38 38 H 1.09010 * 109.43821 * 284.47255 * 24 7 6 39 39 H 1.09001 * 109.43495 * 44.34665 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1964 0.0000 4 6 3.5752 1.2001 0.0049 5 35 4.5180 2.8393 0.0098 6 6 4.2666 0.0039 0.0066 7 6 3.5843 -1.2022 0.0054 8 6 2.2002 -1.2113 0.0058 9 7 1.4497 -2.3866 0.0208 10 6 0.8646 -2.6207 1.3477 11 6 -0.3401 -3.5163 1.2147 12 8 -0.6778 -3.9203 0.1221 13 7 -1.0423 -3.8684 2.3099 14 6 -2.1379 -4.6836 2.1890 15 1 -2.4385 -5.0433 1.2160 16 6 -2.8621 -5.0461 3.3179 17 7 -2.4967 -4.6080 4.5018 18 14 -4.3554 -6.1562 3.1531 19 1 -3.9332 -7.5749 3.2728 20 1 -5.3302 -5.8375 4.2270 21 1 -4.9900 -5.9388 1.8282 22 6 2.2042 -3.5563 -0.4337 23 6 3.4969 -3.6552 0.3858 24 6 4.3919 -2.4757 -0.0011 25 1 -0.3634 0.1003 -1.0227 26 1 -0.3633 -0.9358 0.4245 27 1 -0.3634 0.8356 0.5982 28 1 1.6487 2.1299 -0.0042 29 1 5.3465 0.0089 0.0086 30 1 1.6033 -3.0983 1.9914 31 1 0.5631 -1.6687 1.7849 32 1 -0.7725 -3.5450 3.1837 33 1 -3.0020 -4.8614 5.2900 34 1 2.4485 -3.4461 -1.4903 35 1 1.6090 -4.4578 -0.2882 36 1 4.0051 -4.5930 0.1609 37 1 3.2635 -3.6076 1.4495 38 1 4.7998 -2.6416 -0.9983 39 1 5.2093 -2.3905 0.7150 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109747185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:41 Heat of formation + Delta-G solvation = -21.270528 kcal Electronic energy + Delta-G solvation = -23136.334677 eV Core-core repulsion = 19703.006114 eV Total energy + Delta-G solvation = -3433.328563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 352.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99072 -39.94393 -38.00205 -35.97304 -35.49462 -33.28961 -33.03086 -31.88372 -30.18936 -29.59432 -27.56591 -26.60211 -25.00094 -24.10575 -21.96049 -21.34674 -20.35079 -19.74818 -18.13552 -17.66598 -17.25192 -16.63977 -16.44563 -16.03965 -15.67421 -15.29332 -15.22089 -15.04684 -14.51643 -14.28777 -14.18063 -13.86943 -13.67763 -13.55679 -13.47860 -13.07354 -12.95487 -12.63396 -12.56329 -12.40951 -12.33444 -12.12333 -11.80941 -11.68394 -11.45504 -11.43488 -11.21104 -10.53918 -10.00832 -9.95064 -9.62695 -8.79597 -8.45704 -5.94324 0.06482 0.27510 0.66186 1.38084 1.42493 1.54770 2.03506 2.25544 2.43098 2.68790 3.20225 3.31502 3.65743 3.72530 3.88816 3.93482 4.08998 4.16818 4.20501 4.32054 4.35412 4.40912 4.48671 4.56999 4.75055 4.78047 4.79411 4.86035 4.96055 5.03236 5.12925 5.15290 5.22795 5.34638 5.42124 5.47107 5.64521 5.88141 6.03735 6.39891 6.60228 7.13407 7.55722 8.11074 8.71631 Molecular weight = 352.05amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.002605 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.528842 B =10747.059292 C =11442.009153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.085 4.085 4 C -0.108 4.108 5 Br -0.047 7.047 6 C -0.078 4.078 7 C -0.115 4.115 8 C 0.114 3.886 9 N -0.487 5.487 10 C 0.062 3.938 11 C 0.446 3.554 12 O -0.610 6.610 13 N -0.573 5.573 14 C -0.330 4.330 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.920 5.920 18 Si 0.991 3.009 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.273 1.273 22 C 0.060 3.940 23 C -0.154 4.154 24 C -0.071 4.071 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.395 0.605 33 H 0.277 0.723 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.896 13.186 -5.818 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.187 4.187 5 Br 0.038 6.962 6 C -0.098 4.098 7 C -0.118 4.118 8 C 0.016 3.984 9 N -0.202 5.202 10 C -0.066 4.066 11 C 0.233 3.767 12 O -0.495 6.495 13 N -0.210 5.210 14 C -0.459 4.459 15 H 0.098 0.902 16 C -0.211 4.211 17 N -0.561 5.561 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.198 1.198 22 C -0.067 4.067 23 C -0.193 4.193 24 C -0.107 4.107 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.518 13.507 -6.670 23.104 hybrid contribution -0.605 -0.896 0.896 1.404 sum 16.913 12.611 -5.774 21.873 Atomic orbital electron populations 1.20786 0.90531 1.02831 1.02700 1.19936 0.96592 0.91437 1.01385 1.20907 0.92282 0.98088 0.99250 1.21700 0.94624 0.92120 1.10302 1.96678 1.75010 1.26636 1.97859 1.21066 1.00768 0.89462 0.98524 1.20160 0.92394 0.96580 1.02710 1.18685 0.90685 0.89985 0.99007 1.57915 1.34801 1.02778 1.24719 1.21855 0.94921 1.00270 0.89581 1.20518 0.86661 0.85185 0.84365 1.90502 1.71879 1.59611 1.27552 1.41905 1.26148 1.44518 1.08463 1.19635 1.05325 1.25948 0.95009 0.90212 1.25998 1.01721 0.99308 0.94101 1.69671 1.41889 1.45815 0.98745 0.84958 0.77402 0.78166 0.78023 1.19656 1.19672 1.19779 1.22196 0.93033 0.91674 0.99830 1.22194 0.96642 1.00304 1.00115 1.20575 0.97074 0.89249 1.03847 0.91187 0.92475 0.90215 0.83734 0.83112 0.90366 0.87820 0.77148 0.91331 0.89922 0.91704 0.88435 0.92029 0.88745 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.19 9.37 71.24 0.67 -2.52 16 2 C -0.09 -2.47 5.58 -19.64 -0.11 -2.58 16 3 C -0.09 -1.97 9.44 22.20 0.21 -1.76 16 4 C -0.11 -2.30 6.22 22.28 0.14 -2.17 16 5 Br -0.05 -0.86 33.70 -20.37 -0.69 -1.55 16 6 C -0.08 -1.58 9.37 22.33 0.21 -1.37 16 7 C -0.11 -2.63 5.74 -19.71 -0.11 -2.74 16 8 C 0.11 3.22 5.08 38.29 0.19 3.41 16 9 N -0.49 -16.04 3.40 -700.10 -2.38 -18.42 16 10 C 0.06 2.19 4.20 85.56 0.36 2.55 16 11 C 0.45 20.84 7.16 87.65 0.63 21.46 16 12 O -0.61 -33.01 14.87 -3.06 -0.05 -33.05 16 13 N -0.57 -28.96 5.29 -306.98 -1.62 -30.58 16 14 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 15 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 16 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 17 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 18 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.06 1.79 5.49 86.52 0.48 2.26 16 23 C -0.15 -3.38 6.02 30.73 0.19 -3.19 16 24 C -0.07 -1.27 5.81 29.89 0.17 -1.10 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.98 4.81 -2.39 -0.01 1.97 16 27 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 28 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.08 2.49 6.15 -2.39 -0.01 2.48 16 31 H 0.10 3.44 6.09 -2.38 -0.01 3.43 16 32 H 0.39 19.10 7.90 -92.71 -0.73 18.37 16 33 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.08 2.33 8.11 -2.39 -0.02 2.32 16 35 H 0.06 2.35 6.77 -2.39 -0.02 2.33 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.46 6.30 -2.39 -0.02 1.44 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.01 334.27 2.23 -61.78 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.36 Total: 31.66 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.30 Total: -5.50 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -3.72 Total: -97.90 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.69 Total: -1.55 kcal Total: -64.01 2.23 -61.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109747185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.508 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds