Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47295 * 2 1 4 4 C 1.50702 * 109.47228 * 239.99704 * 2 1 3 5 5 H 1.08004 * 119.99534 * 240.00478 * 4 2 1 6 6 C 1.37870 * 119.99847 * 60.00185 * 4 2 1 7 7 N 1.31523 * 119.99806 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00332 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46691 * 269.99927 * 8 6 4 10 10 H 1.48493 * 109.46882 * 29.99471 * 8 6 4 11 11 H 1.48500 * 109.47367 * 149.99856 * 8 6 4 12 12 N 1.46505 * 109.46588 * 119.99761 * 2 1 3 13 13 C 1.46493 * 119.99972 * 60.00319 * 12 2 1 14 14 C 1.34779 * 119.99578 * 239.99853 * 12 2 1 15 15 O 1.21357 * 120.00469 * 356.43391 * 14 12 2 16 16 C 1.49337 * 119.99580 * 176.43361 * 14 12 2 17 17 O 1.21381 * 119.99971 * 5.92392 * 16 14 12 18 18 N 1.34777 * 119.99833 * 185.92357 * 16 14 12 19 19 C 1.39517 * 119.99956 * 174.44411 * 18 16 14 20 20 C 1.38801 * 120.14296 * 335.25018 * 19 18 16 21 21 C 1.38111 * 120.04370 * 179.76349 * 20 19 18 22 22 C 1.38431 * 120.32761 * 0.51439 * 21 20 19 23 23 C 1.38014 * 120.28185 * 359.73774 * 22 21 20 24 24 C 1.39283 * 119.94869 * 0.02562 * 23 22 21 25 25 C 1.48291 * 120.16036 * 179.97438 * 24 23 22 26 26 C 1.39382 * 120.12759 * 129.74605 * 25 24 23 27 27 C 1.38010 * 119.87198 * 179.76398 * 26 25 24 28 28 C 1.38332 * 120.12513 * 0.48761 * 27 26 25 29 29 C 1.38330 * 120.25491 * 359.76897 * 28 27 26 30 30 C 1.38015 * 120.12409 * 359.97438 * 29 28 27 31 31 H 1.08996 * 109.47217 * 300.00167 * 1 2 3 32 32 H 1.09004 * 109.46565 * 60.00729 * 1 2 3 33 33 H 1.09000 * 109.46882 * 179.97438 * 1 2 3 34 34 H 0.96996 * 119.99875 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.47439 * 95.97102 * 13 12 2 36 36 H 1.09002 * 109.47368 * 215.96888 * 13 12 2 37 37 H 1.09000 * 109.47523 * 335.96413 * 13 12 2 38 38 H 0.96996 * 119.99751 * 354.45226 * 18 16 14 39 39 H 1.08008 * 119.97506 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.83826 * 180.25113 * 21 20 19 41 41 H 1.08000 * 119.85751 * 179.76410 * 22 21 20 42 42 H 1.07994 * 120.02463 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.06240 * 359.97438 * 26 25 24 44 44 H 1.07999 * 119.93789 * 180.23616 * 27 26 25 45 45 H 1.07999 * 119.87308 * 179.74059 * 28 27 26 46 46 H 1.07997 * 119.93850 * 179.97438 * 29 28 27 47 47 H 1.07998 * 120.06038 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 2.1383 -0.8592 -3.5565 8 14 0.6261 1.2798 -2.6542 9 1 -0.8018 0.8744 -2.6994 10 1 0.8493 2.1772 -1.4924 11 1 0.9775 1.9952 -3.9071 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.1399 1.1057 1.8598 16 6 3.2250 -0.7142 3.3416 17 8 2.9697 -1.8879 3.5165 18 7 3.8982 -0.0234 4.2830 19 6 4.2001 -0.6232 5.5059 20 6 3.4236 -1.6722 5.9784 21 6 3.7274 -2.2677 7.1869 22 6 4.7989 -1.8168 7.9386 23 6 5.5768 -0.7713 7.4842 24 6 5.2840 -0.1655 6.2646 25 6 6.1164 0.9586 5.7722 26 6 6.6269 0.9353 4.4754 27 6 7.3970 1.9866 4.0209 28 6 7.6708 3.0572 4.8530 29 6 7.1713 3.0832 6.1427 30 6 6.3957 2.0399 6.6062 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9037 -0.5281 -4.4375 35 1 2.4672 -2.7352 1.0657 36 1 1.5198 -2.2597 2.4955 37 1 0.7427 -2.3281 0.8957 38 1 4.1725 0.8908 4.1102 39 1 2.5834 -2.0252 5.3988 40 1 3.1234 -3.0863 7.5494 41 1 5.0273 -2.2855 8.8844 42 1 6.4115 -0.4227 8.0741 43 1 6.4174 0.0979 3.8265 44 1 7.7899 1.9714 3.0150 45 1 8.2774 3.8757 4.4945 46 1 7.3886 3.9213 6.7881 47 1 6.0058 2.0615 7.6131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132324742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = 12.787608 kcal Electronic energy + Delta-G solvation = -30754.280956 eV Core-core repulsion = 26675.122894 eV Total energy + Delta-G solvation = -4079.158062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19739 -39.80443 -38.69451 -37.87268 -36.09506 -34.84235 -32.86190 -32.66133 -31.09125 -30.52940 -30.08645 -28.96143 -26.45452 -25.39842 -24.87163 -23.78523 -23.01390 -22.20537 -21.18481 -20.71379 -19.30048 -17.96596 -17.36091 -17.20401 -16.78305 -16.34099 -15.95788 -15.82115 -15.46668 -15.15390 -14.91231 -14.65933 -14.40351 -14.05445 -13.86230 -13.61401 -13.48211 -13.31637 -13.05597 -12.97646 -12.68899 -12.47771 -12.31395 -12.24425 -11.99120 -11.85913 -11.57374 -11.31223 -11.25625 -11.20135 -10.77629 -10.70644 -10.53763 -10.21051 -9.70382 -9.51318 -9.43026 -9.12486 -8.94629 -8.70444 -8.63402 -8.12123 -7.91244 -6.20543 -4.22689 0.65723 1.08329 1.22208 1.47991 1.83386 2.53232 3.18458 3.32116 3.33097 3.41039 3.55530 3.75702 3.85031 4.28633 4.34697 4.57029 4.68672 4.79352 4.82723 4.90586 4.95867 5.11451 5.15236 5.23981 5.28960 5.39060 5.44176 5.65517 5.82456 5.84525 5.86238 6.02438 6.08715 6.11785 6.13797 6.22130 6.24719 6.29788 6.34674 6.36416 6.38768 6.39998 6.52490 6.73322 6.77897 6.82262 6.88343 7.07099 7.14898 7.49317 7.71994 7.97412 8.29623 8.48519 8.81139 9.38345 10.91960 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.002993 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.364843 B = 9353.671407 C =10960.098507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.227 3.773 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.292 1.292 12 N -0.545 5.545 13 C 0.072 3.928 14 C 0.495 3.505 15 O -0.533 6.533 16 C 0.509 3.491 17 O -0.493 6.493 18 N -0.646 5.646 19 C 0.166 3.834 20 C -0.131 4.131 21 C -0.095 4.095 22 C -0.140 4.140 23 C -0.085 4.085 24 C -0.079 4.079 25 C -0.051 4.051 26 C -0.108 4.108 27 C -0.111 4.111 28 C -0.117 4.117 29 C -0.120 4.120 30 C -0.106 4.106 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.267 0.733 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.423 0.577 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 2.544 23.530 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.125 3.875 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.275 5.275 13 C -0.071 4.071 14 C 0.276 3.724 15 O -0.412 6.412 16 C 0.293 3.707 17 O -0.367 6.367 18 N -0.292 5.292 19 C 0.071 3.929 20 C -0.151 4.151 21 C -0.114 4.114 22 C -0.159 4.159 23 C -0.104 4.104 24 C -0.082 4.082 25 C -0.051 4.051 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.135 4.135 29 C -0.138 4.138 30 C -0.124 4.124 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.262 0.738 39 H 0.167 0.833 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.402 2.309 23.197 24.174 hybrid contribution -0.397 1.063 -0.494 1.237 sum 6.004 3.372 22.703 23.724 Atomic orbital electron populations 1.22483 0.98483 1.01542 0.99564 1.19510 0.90378 0.95238 0.82333 0.91647 1.21094 1.33134 1.14443 0.88205 0.90104 1.24851 0.95603 0.96587 0.95530 1.69869 1.44856 1.40084 0.98013 0.86927 0.80497 0.83739 0.77626 1.20249 1.18784 1.21972 1.47868 1.45819 1.12706 1.21109 1.22205 1.01429 0.80769 1.02669 1.19577 0.81796 0.86719 0.84339 1.90732 1.55745 1.17755 1.76960 1.20832 0.78268 0.86682 0.84960 1.90630 1.52021 1.15325 1.78719 1.43347 1.54727 1.18181 1.12927 1.17782 0.94184 0.95466 0.85489 1.21412 1.00550 0.96574 0.96606 1.21115 0.97152 0.99248 0.93855 1.21053 0.96562 0.97901 1.00412 1.20970 0.99322 0.95799 0.94299 1.18486 0.94835 0.98451 0.96431 1.18713 0.98182 0.94012 0.94190 1.21352 0.97385 0.98922 0.94935 1.21180 0.98056 0.93700 0.99994 1.21255 0.99804 0.98374 0.94073 1.21096 0.98068 0.98496 0.96144 1.21205 0.98449 0.93299 0.99440 0.94602 0.92758 0.92126 0.92289 0.92391 0.89272 0.90971 0.73782 0.83342 0.85569 0.85842 0.85573 0.85851 0.85524 0.85939 0.85897 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.66 37.16 0.32 -3.10 16 2 C 0.23 5.37 2.22 -69.07 -0.15 5.22 16 3 H 0.07 1.68 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.54 8.95 -34.44 -0.31 -14.84 16 5 H 0.08 2.41 7.89 -52.48 -0.41 1.99 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 8 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 10 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 N -0.54 -11.37 2.75 -175.81 -0.48 -11.86 16 13 C 0.07 1.29 8.75 59.84 0.52 1.82 16 14 C 0.50 9.85 7.73 -11.64 -0.09 9.76 16 15 O -0.53 -11.69 15.82 5.49 0.09 -11.60 16 16 C 0.51 8.47 7.57 -11.64 -0.09 8.38 16 17 O -0.49 -8.27 10.29 5.47 0.06 -8.21 16 18 N -0.65 -9.28 4.36 -10.12 -0.04 -9.32 16 19 C 0.17 2.18 6.35 -83.50 -0.53 1.65 16 20 C -0.13 -1.65 8.71 -39.42 -0.34 -1.99 16 21 C -0.10 -0.96 10.03 -39.56 -0.40 -1.35 16 22 C -0.14 -1.26 10.03 -39.59 -0.40 -1.66 16 23 C -0.09 -0.82 9.51 -39.28 -0.37 -1.20 16 24 C -0.08 -0.92 5.49 -104.72 -0.57 -1.49 16 25 C -0.05 -0.57 4.95 -104.91 -0.52 -1.09 16 26 C -0.11 -1.29 8.08 -39.24 -0.32 -1.60 16 27 C -0.11 -1.21 10.03 -39.63 -0.40 -1.60 16 28 C -0.12 -1.10 10.04 -39.51 -0.40 -1.50 16 29 C -0.12 -1.06 10.03 -39.63 -0.40 -1.46 16 30 C -0.11 -1.01 9.51 -39.24 -0.37 -1.39 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 33 H 0.06 1.19 6.67 -51.93 -0.35 0.84 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.45 5.36 -51.93 -0.28 1.17 16 37 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 38 H 0.42 5.98 6.53 -40.82 -0.27 5.71 16 39 H 0.15 2.00 5.78 -52.48 -0.30 1.70 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.96 8.04 -52.49 -0.42 0.54 16 43 H 0.12 1.58 7.64 -52.49 -0.40 1.18 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -31.38 380.68 -8.73 -40.11 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.81 Total: 9.11 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.91 Total: -5.37 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.25 Total: -46.93 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.14 Total: -19.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.38 -8.73 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132324742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.901 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds