Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21297 * 119.99875 * 2 1 4 4 N 1.34773 * 120.00573 * 180.02562 * 2 1 3 5 5 C 1.40089 * 120.00150 * 184.23319 * 4 2 1 6 6 C 1.38869 * 119.99709 * 213.77736 * 5 4 2 7 7 C 1.38052 * 119.99615 * 180.02562 * 6 5 4 8 8 C 1.38860 * 120.00257 * 0.02562 * 7 6 5 9 9 N 1.40110 * 120.00185 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99642 * 35.39436 * 9 8 7 11 11 O 1.21588 * 120.00104 * 355.27944 * 10 9 8 12 12 N 1.34783 * 119.99807 * 175.27990 * 10 9 8 13 13 C 1.46502 * 119.99940 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46743 * 35.00422 * 13 12 10 15 15 C 1.50695 * 109.47115 * 275.00368 * 13 12 10 16 16 H 1.08004 * 120.00417 * 124.11269 * 15 13 12 17 17 C 1.37880 * 120.00276 * 303.83362 * 15 13 12 18 18 N 1.31522 * 119.99700 * 9.37746 * 17 15 13 19 19 Si 1.86796 * 120.00265 * 189.38260 * 17 15 13 20 20 H 1.48499 * 109.47341 * 89.99766 * 19 17 15 21 21 H 1.48501 * 109.47036 * 209.99878 * 19 17 15 22 22 H 1.48496 * 109.47255 * 329.99925 * 19 17 15 23 23 C 1.50702 * 109.46930 * 155.00304 * 13 12 10 24 24 C 1.38230 * 119.99909 * 31.40825 * 23 13 12 25 25 C 1.38241 * 119.99929 * 179.81226 * 24 23 13 26 26 C 1.38237 * 119.99507 * 0.39291 * 25 24 23 27 27 C 1.38231 * 120.00347 * 359.86401 * 26 25 24 28 28 C 1.38232 * 119.99978 * 359.94934 * 27 26 25 29 29 C 1.38858 * 120.00145 * 0.23598 * 8 7 6 30 30 C 1.38060 * 119.99853 * 359.48622 * 29 8 7 31 31 H 1.09005 * 109.46883 * 240.00050 * 1 2 3 32 32 H 1.08997 * 109.47522 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47172 * 120.00017 * 1 2 3 34 34 H 0.97001 * 119.99322 * 4.23445 * 4 2 1 35 35 H 1.07997 * 120.00351 * 0.02562 * 6 5 4 36 36 H 1.07996 * 120.00141 * 180.02562 * 7 6 5 37 37 H 0.97001 * 120.00289 * 215.38973 * 9 8 7 38 38 H 0.97003 * 119.99826 * 0.02562 * 12 10 9 39 39 H 0.96993 * 119.99721 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.00143 * 359.97438 * 24 23 13 41 41 H 1.07994 * 119.99993 * 180.22783 * 25 24 23 42 42 H 1.08001 * 119.99699 * 179.83109 * 26 25 24 43 43 H 1.07993 * 120.00075 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.00236 * 180.02562 * 28 27 26 45 45 H 1.07996 * 120.00731 * 179.72552 * 29 8 7 46 46 H 1.07995 * 119.99797 * 180.25240 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5790 -1.1687 0.0890 6 6 4.3158 -2.1435 -0.5707 7 6 5.6935 -2.1453 -0.4821 8 6 6.3424 -1.1729 0.2673 9 7 7.7406 -1.1751 0.3577 10 6 8.4838 -1.5497 -0.7024 11 8 7.9420 -1.9672 -1.7076 12 7 9.8276 -1.4614 -0.6482 13 6 10.6355 -1.8691 -1.8003 14 1 10.1073 -1.6202 -2.7207 15 6 10.8752 -3.3559 -1.7449 16 1 10.5927 -3.9799 -2.5799 17 6 11.4603 -3.9189 -0.6306 18 7 11.6407 -3.1962 0.4534 19 14 11.9969 -5.7078 -0.6605 20 1 13.4010 -5.7956 -1.1359 21 1 11.9012 -6.2763 0.7081 22 1 11.1151 -6.4739 -1.5774 23 6 11.9572 -1.1457 -1.7682 24 6 12.5283 -0.8031 -0.5569 25 6 13.7425 -0.1430 -0.5274 26 6 14.3816 0.1818 -1.7094 27 6 13.8078 -0.1561 -2.9208 28 6 12.5955 -0.8197 -2.9502 29 6 5.6053 -0.2014 0.9314 30 6 4.2279 -0.1961 0.8381 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3634 1.0276 0.0005 33 1 -0.3633 -0.5138 -0.8899 34 1 1.6979 -2.0060 -0.0629 35 1 3.8112 -2.9001 -1.1532 36 1 6.2667 -2.9031 -0.9955 37 1 8.1736 -0.9070 1.1832 38 1 10.2598 -1.1287 0.1540 39 1 12.0526 -3.5922 1.2372 40 1 12.0272 -1.0535 0.3665 41 1 14.1905 0.1214 0.4190 42 1 15.3289 0.6999 -1.6864 43 1 14.3069 0.0979 -3.8442 44 1 12.1474 -1.0840 -3.8966 45 1 6.1096 0.5523 1.5179 46 1 3.6549 0.5619 1.3513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170600039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = 0.602060 kcal Electronic energy + Delta-G solvation = -30056.171774 eV Core-core repulsion = 25911.059396 eV Total energy + Delta-G solvation = -4145.112378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53439 -39.62759 -38.51688 -37.70284 -35.30819 -34.43297 -33.37501 -31.93400 -30.72296 -30.64014 -30.19702 -29.77169 -27.67569 -26.59158 -23.50090 -22.97417 -22.18444 -21.71675 -20.80384 -20.21460 -19.66197 -17.82011 -17.70743 -17.26948 -16.93409 -16.46687 -15.82826 -15.51004 -15.01494 -14.56233 -14.46568 -14.39464 -14.12646 -13.84996 -13.73348 -13.44652 -13.23545 -13.06218 -12.92895 -12.81101 -12.62332 -12.44307 -12.39326 -12.18848 -11.95288 -11.69134 -11.07458 -11.03634 -10.91293 -10.64133 -10.54145 -10.22453 -10.08039 -9.90558 -9.64289 -9.35183 -9.01414 -8.79407 -8.64361 -8.06436 -7.81839 -7.61937 -7.27554 -6.23445 -4.31457 1.42993 1.68082 2.27008 2.34703 2.47811 2.98024 3.20304 3.27695 3.32478 3.49843 3.93134 4.26009 4.34773 4.50508 4.73126 4.90026 4.99752 5.01385 5.09556 5.25390 5.31470 5.46811 5.57909 5.65806 5.67893 5.74174 5.77072 5.84323 6.06196 6.18945 6.31222 6.44236 6.49756 6.52756 6.65813 6.68773 6.77913 6.88409 6.94118 7.05383 7.28878 7.30252 7.41328 7.44523 7.59596 7.70549 7.75165 7.94216 7.96676 7.98952 8.04647 8.69545 9.03627 9.37171 9.60039 10.76045 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.002381 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.913140 B =11756.560922 C =12853.623454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.529 6.529 4 N -0.671 5.671 5 C 0.105 3.895 6 C -0.124 4.124 7 C -0.102 4.102 8 C 0.176 3.824 9 N -0.697 5.697 10 C 0.699 3.301 11 O -0.592 6.592 12 N -0.694 5.694 13 C 0.310 3.690 14 H 0.054 0.946 15 C -0.511 4.511 16 H 0.065 0.935 17 C 0.078 3.922 18 N -0.876 5.876 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.042 4.042 24 C -0.087 4.087 25 C -0.137 4.137 26 C -0.149 4.149 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.141 4.141 30 C -0.100 4.100 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.408 0.592 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.401 0.599 38 H 0.390 0.610 39 H 0.264 0.736 40 H 0.144 0.856 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 4.588 3.681 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.293 3.707 3 O -0.404 6.404 4 N -0.316 5.316 5 C 0.011 3.989 6 C -0.145 4.145 7 C -0.124 4.124 8 C 0.079 3.921 9 N -0.344 5.344 10 C 0.399 3.601 11 O -0.471 6.471 12 N -0.346 5.346 13 C 0.208 3.792 14 H 0.072 0.928 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.127 4.127 18 N -0.513 5.513 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.044 4.044 24 C -0.106 4.106 25 C -0.155 4.155 26 C -0.167 4.167 27 C -0.153 4.153 28 C -0.143 4.143 29 C -0.163 4.163 30 C -0.121 4.121 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.243 0.757 35 H 0.141 0.859 36 H 0.167 0.833 37 H 0.236 0.764 38 H 0.226 0.774 39 H 0.074 0.926 40 H 0.161 0.839 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.143 0.857 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.174 4.964 2.901 14.374 hybrid contribution 0.785 -1.343 0.869 1.782 sum -12.389 3.621 3.770 13.446 Atomic orbital electron populations 1.21916 0.91118 1.05781 1.04390 1.20956 0.90735 0.83373 0.75611 1.90756 1.70572 1.31252 1.47842 1.43543 1.05417 1.09469 1.73221 1.17639 0.82116 0.99157 0.99964 1.20758 0.93769 0.99882 1.00054 1.21272 0.93142 0.98474 0.99468 1.17603 0.82472 0.93884 0.98186 1.42885 1.03809 1.71853 1.15851 1.16006 0.82528 0.78972 0.82577 1.90803 1.71645 1.52803 1.31822 1.45843 1.02577 1.66450 1.19721 1.17493 0.83984 0.92691 0.85030 0.92778 1.21409 1.39342 0.91497 1.02685 0.91637 1.24928 0.94420 0.98268 0.95045 1.69716 1.42525 1.36446 1.02565 0.86504 0.79146 0.84551 0.77354 1.20496 1.21241 1.19751 1.20374 0.98611 0.92800 0.92597 1.21443 0.95033 0.94810 0.99301 1.21080 0.96699 1.00686 0.97033 1.20845 0.99727 1.03050 0.93117 1.20843 0.96322 1.01127 0.97037 1.20853 0.95840 0.99739 0.97847 1.20749 0.93546 0.98124 1.03895 1.20750 0.93743 0.98931 0.98626 0.89199 0.88752 0.89244 0.75657 0.85866 0.83278 0.76394 0.77447 0.92639 0.83880 0.87687 0.87870 0.87563 0.87081 0.85712 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.32 36.00 0.37 -0.56 16 2 C 0.51 5.30 7.69 -10.99 -0.08 5.22 16 3 O -0.53 -8.04 14.76 5.54 0.08 -7.96 16 4 N -0.67 -6.59 5.35 -9.83 -0.05 -6.64 16 5 C 0.10 1.41 6.28 -83.62 -0.53 0.89 16 6 C -0.12 -1.75 9.96 -39.42 -0.39 -2.14 16 7 C -0.10 -1.77 8.69 -39.42 -0.34 -2.11 16 8 C 0.18 2.98 6.30 -83.61 -0.53 2.45 16 9 N -0.70 -12.26 5.35 -14.18 -0.08 -12.34 16 10 C 0.70 15.21 8.37 -86.91 -0.73 14.48 16 11 O -0.59 -14.71 13.45 5.29 0.07 -14.64 16 12 N -0.69 -15.06 4.14 -60.96 -0.25 -15.32 16 13 C 0.31 7.33 2.44 -70.23 -0.17 7.16 16 14 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 15 C -0.51 -13.27 8.83 -34.44 -0.30 -13.57 16 16 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 17 C 0.08 1.96 5.19 -17.82 -0.09 1.87 16 18 N -0.88 -21.20 9.00 55.43 0.50 -20.71 16 19 Si 0.90 20.46 29.55 -169.99 -5.02 15.44 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.04 -0.93 4.81 -104.62 -0.50 -1.43 16 24 C -0.09 -1.80 7.82 -39.58 -0.31 -2.11 16 25 C -0.14 -2.53 10.05 -39.58 -0.40 -2.92 16 26 C -0.15 -2.60 10.05 -39.58 -0.40 -3.00 16 27 C -0.14 -2.41 10.05 -39.59 -0.40 -2.81 16 28 C -0.12 -2.49 9.70 -39.58 -0.38 -2.87 16 29 C -0.14 -2.08 9.96 -39.42 -0.39 -2.47 16 30 C -0.10 -1.45 8.65 -39.42 -0.34 -1.79 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.41 2.47 8.82 -40.82 -0.36 2.11 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 2.96 6.23 -52.49 -0.33 2.63 16 37 H 0.40 5.92 8.84 -40.82 -0.36 5.56 16 38 H 0.39 7.93 6.00 -40.82 -0.24 7.68 16 39 H 0.26 6.24 8.31 -40.82 -0.34 5.90 16 40 H 0.14 3.02 4.79 -52.48 -0.25 2.77 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 46 H 0.13 1.88 6.41 -52.49 -0.34 1.54 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -31.91 385.53 -10.48 -42.39 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -5.62 Total: 19.68 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -5.92 Total: -5.72 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.12 Total: -55.00 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.15 Total: -22.60 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.91 -10.48 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170600039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.993 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds