Wall clock time and date at job start Tue Mar 31 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46921 * 2 1 4 4 C 1.38266 * 119.94521 * 89.99621 * 3 2 1 5 5 C 1.38141 * 120.05626 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.94689 * 0.25702 * 5 4 3 7 7 O 1.35903 * 120.05747 * 179.74604 * 6 5 4 8 8 C 1.42899 * 116.99721 * 174.42177 * 7 6 5 9 9 H 1.08999 * 109.47236 * 344.37660 * 8 7 6 10 10 C 1.52999 * 109.46971 * 104.37744 * 8 7 6 11 11 C 1.52996 * 109.47046 * 294.99274 * 10 8 7 12 12 C 1.50700 * 109.46839 * 224.37423 * 8 7 6 13 13 O 1.21278 * 120.00294 * 0.02562 * 12 8 7 14 14 N 1.34781 * 120.00001 * 180.02562 * 12 8 7 15 15 C 1.39242 * 119.99981 * 185.61885 * 14 12 8 16 16 C 1.39477 * 119.83001 * 215.66703 * 15 14 12 17 17 C 1.36377 * 120.16682 * 179.75789 * 16 15 14 18 18 C 1.40865 * 119.82588 * 0.51235 * 17 16 15 19 19 C 1.41157 * 120.16128 * 179.71638 * 18 17 16 20 20 H 1.08003 * 119.99630 * 158.74234 * 19 18 17 21 21 C 1.39903 * 119.99874 * 338.73977 * 19 18 17 22 22 N 1.30872 * 120.00372 * 332.75815 * 21 19 18 23 23 Si 1.86803 * 119.99723 * 152.76194 * 21 19 18 24 24 H 1.48498 * 109.47386 * 94.97924 * 23 21 19 25 25 H 1.48502 * 109.47062 * 214.98403 * 23 21 19 26 26 H 1.48502 * 109.47082 * 334.98045 * 23 21 19 27 27 C 1.40866 * 119.67488 * 359.74127 * 18 17 16 28 28 C 1.36378 * 119.82844 * 0.02562 * 27 18 17 29 29 C 1.38733 * 119.88301 * 359.46929 * 6 5 4 30 30 C 1.38139 * 119.94717 * 0.55294 * 29 6 5 31 31 H 1.09007 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47284 * 299.99964 * 1 2 3 33 33 H 1.08998 * 109.46831 * 60.00250 * 1 2 3 34 34 H 1.08998 * 109.47284 * 240.00036 * 2 1 3 35 35 H 1.08998 * 109.46831 * 119.99750 * 2 1 3 36 36 H 1.08002 * 119.96920 * 0.02562 * 4 3 2 37 37 H 1.08006 * 120.02842 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47270 * 55.00037 * 10 8 7 39 39 H 1.09002 * 109.46630 * 175.00005 * 10 8 7 40 40 H 1.09000 * 109.47708 * 300.00494 * 11 10 8 41 41 H 1.09002 * 109.46809 * 60.00840 * 11 10 8 42 42 H 1.09003 * 109.47073 * 179.97438 * 11 10 8 43 43 H 0.96999 * 119.99610 * 5.61363 * 14 12 8 44 44 H 1.08004 * 119.91699 * 0.02562 * 16 15 14 45 45 H 1.08002 * 120.08459 * 180.24757 * 17 16 15 46 46 H 0.96999 * 119.99845 * 180.02562 * 22 21 19 47 47 H 1.08005 * 120.08667 * 179.97438 * 27 18 17 48 48 H 1.07996 * 119.91326 * 179.97438 * 28 27 18 49 49 H 1.08009 * 120.02586 * 180.24716 * 29 6 5 50 50 H 1.08003 * 119.97324 * 179.72004 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0716 1.1981 5 6 2.7222 3.3742 1.2008 6 6 2.9483 4.0313 0.0000 7 8 3.3958 5.3145 0.0001 8 6 3.7234 5.8873 -1.2675 9 1 3.8167 5.0955 -2.0108 10 6 2.6174 6.8562 -1.6904 11 6 1.3196 6.0795 -1.9207 12 6 5.0293 6.6317 -1.1598 13 8 5.6214 6.6677 -0.1020 14 7 5.5393 7.2574 -2.2392 15 6 6.7998 7.8452 -2.1722 16 6 7.0500 9.0309 -2.8628 17 6 8.2806 9.6151 -2.7981 18 6 9.3034 9.0122 -2.0399 19 6 10.5814 9.6076 -1.9729 20 1 11.2467 9.3678 -1.1565 21 6 10.9864 10.5083 -2.9639 22 7 10.4880 10.4209 -4.1708 23 14 12.2386 11.8356 -2.5643 24 1 13.5964 11.3634 -2.9365 25 1 11.9157 13.0670 -3.3289 26 1 12.1991 12.1316 -1.1096 27 6 9.0445 7.8119 -1.3495 28 6 7.8075 7.2420 -1.4199 29 6 2.7222 3.3742 -1.2007 30 6 2.2619 2.0718 -1.1981 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0822 1.5610 2.1326 37 1 2.9013 3.8822 2.1369 38 1 2.4634 7.5967 -0.9056 39 1 2.9083 7.3592 -2.6126 40 1 1.4736 5.3389 -2.7055 41 1 1.0287 5.5764 -0.9984 42 1 0.5315 6.7698 -2.2215 43 1 5.0282 7.2982 -3.0626 44 1 6.2659 9.4898 -3.4469 45 1 8.4717 10.5353 -3.3302 46 1 10.7691 11.0451 -4.8579 47 1 9.8240 7.3437 -0.7665 48 1 7.6077 6.3216 -0.8914 49 1 2.9013 3.8822 -2.1369 50 1 2.0814 1.5614 -2.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222877289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:51 Heat of formation + Delta-G solvation = -37.182367 kcal Electronic energy + Delta-G solvation = -30012.303688 eV Core-core repulsion = 25969.093199 eV Total energy + Delta-G solvation = -4043.210490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.82776 -39.51653 -38.10111 -37.04236 -34.58439 -34.24855 -33.51237 -32.84786 -31.14817 -29.65409 -29.38361 -28.91888 -27.45392 -24.85929 -23.85877 -23.43597 -22.33980 -21.58714 -21.05044 -20.59338 -19.56915 -18.62170 -17.55429 -17.29835 -16.27078 -15.99351 -15.71814 -15.60523 -15.22687 -14.82903 -14.37722 -14.34659 -14.15245 -13.99935 -13.89953 -13.59672 -13.39703 -13.14273 -13.07406 -12.73721 -12.63338 -12.34272 -12.20773 -12.07444 -11.93069 -11.85087 -11.55543 -11.46431 -11.29238 -11.18539 -11.15467 -10.99585 -10.95360 -10.63497 -10.56213 -10.13177 -9.75738 -9.45179 -9.17253 -9.14796 -8.73517 -8.15811 -7.58195 -7.12919 -6.89261 -4.30769 1.16461 1.25327 2.49623 2.76541 2.93145 3.03775 3.06981 3.10693 3.32830 3.57202 3.80239 3.87991 4.43265 4.50064 4.54543 4.56864 4.61154 4.76859 4.80962 4.90625 4.96954 5.06842 5.16779 5.22134 5.24675 5.34262 5.41565 5.49411 5.59076 5.65224 5.66632 5.69050 5.82064 5.85558 5.89766 5.98119 6.14744 6.15959 6.19888 6.36501 6.44255 6.59868 6.72856 6.89372 6.98209 7.12015 7.23675 7.29719 7.53805 7.65868 7.85651 7.99091 8.22192 8.23075 8.52840 8.69365 8.82315 8.95783 10.03583 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.001810 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.678311 B =15461.873557 C =15940.425305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.127 4.127 4 C -0.077 4.077 5 C -0.148 4.148 6 C 0.133 3.867 7 O -0.280 6.280 8 C 0.065 3.935 9 H 0.103 0.897 10 C -0.136 4.136 11 C -0.154 4.154 12 C 0.494 3.506 13 O -0.510 6.510 14 N -0.644 5.644 15 C -0.018 4.018 16 C -0.104 4.104 17 C -0.165 4.165 18 C 0.110 3.890 19 C -0.459 4.459 20 H 0.081 0.919 21 C 0.083 3.917 22 N -0.777 5.777 23 Si 0.901 3.099 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.258 1.258 27 C -0.221 4.221 28 C -0.068 4.068 29 C -0.211 4.211 30 C -0.076 4.076 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.394 0.606 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.283 0.717 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.131 0.869 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.343 -13.784 1.215 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.127 4.127 4 C -0.095 4.095 5 C -0.167 4.167 6 C 0.088 3.912 7 O -0.192 6.192 8 C 0.005 3.995 9 H 0.120 0.880 10 C -0.174 4.174 11 C -0.211 4.211 12 C 0.279 3.721 13 O -0.384 6.384 14 N -0.289 5.289 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.185 4.185 18 C 0.107 3.893 19 C -0.487 4.487 20 H 0.099 0.901 21 C -0.138 4.138 22 N -0.401 5.401 23 Si 0.725 3.275 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.182 1.182 27 C -0.241 4.241 28 C -0.088 4.088 29 C -0.229 4.229 30 C -0.094 4.094 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.227 0.773 44 H 0.108 0.892 45 H 0.132 0.868 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.149 0.851 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.877 -13.559 1.913 23.320 hybrid contribution 0.351 0.670 -0.656 1.001 sum -18.526 -12.888 1.257 22.603 Atomic orbital electron populations 1.21763 0.94994 1.01480 1.02174 1.20455 0.95933 0.92625 1.02669 1.19773 1.03095 0.96756 0.93066 1.20816 0.97511 0.93476 0.97736 1.20453 1.04763 0.94928 0.96506 1.19105 0.94047 0.83859 0.94221 1.86226 1.78797 1.24006 1.30127 1.22459 0.94041 0.96816 0.86206 0.87982 1.21950 0.94397 0.98304 1.02731 1.21849 0.96797 1.00347 1.02087 1.20225 0.86078 0.81187 0.84637 1.90734 1.60697 1.59396 1.27618 1.42864 1.18009 1.55013 1.13032 1.17026 0.83915 0.98295 1.11722 1.20167 0.97359 0.93937 1.00910 1.20738 0.91761 1.01153 1.04822 1.17631 0.92946 0.89510 0.89200 1.19560 1.00179 1.21170 1.07819 0.90085 1.25952 0.96692 0.97325 0.93811 1.69904 1.37186 1.31549 1.01422 0.86415 0.80424 0.80253 0.80418 1.19468 1.19895 1.18161 1.20588 0.96199 0.98384 1.08909 1.20195 0.92245 0.98348 0.98018 1.21287 1.07436 0.96914 0.97301 1.20767 0.97368 0.93615 0.97635 0.92602 0.92595 0.92647 0.91257 0.91207 0.85561 0.85079 0.89932 0.89713 0.92463 0.92109 0.91919 0.77264 0.89182 0.86767 0.90652 0.88678 0.88450 0.85134 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.08 -0.54 6.06 -27.88 -0.17 -0.71 16 3 C -0.13 -1.16 5.13 -104.60 -0.54 -1.69 16 4 C -0.08 -0.75 9.69 -39.61 -0.38 -1.13 16 5 C -0.15 -1.74 9.99 -39.43 -0.39 -2.13 16 6 C 0.13 1.71 5.77 -39.22 -0.23 1.48 16 7 O -0.28 -4.19 9.02 -39.35 -0.36 -4.54 16 8 C 0.06 0.86 2.51 -27.88 -0.07 0.79 16 9 H 0.10 1.13 5.16 -51.93 -0.27 0.86 16 10 C -0.14 -1.41 5.58 -26.73 -0.15 -1.56 16 11 C -0.15 -1.31 8.66 37.16 0.32 -0.98 16 12 C 0.49 8.87 6.93 -10.98 -0.08 8.80 16 13 O -0.51 -11.66 14.35 -14.35 -0.21 -11.87 16 14 N -0.64 -11.26 5.21 -9.74 -0.05 -11.31 16 15 C -0.02 -0.40 6.24 -83.57 -0.52 -0.92 16 16 C -0.10 -2.35 9.90 -39.79 -0.39 -2.74 16 17 C -0.16 -4.20 8.70 -39.26 -0.34 -4.54 16 18 C 0.11 2.94 5.59 -106.80 -0.60 2.35 16 19 C -0.46 -12.12 8.98 -37.85 -0.34 -12.46 16 20 H 0.08 2.07 7.98 -52.48 -0.42 1.65 16 21 C 0.08 2.03 4.93 -17.34 -0.09 1.95 16 22 N -0.78 -19.46 11.35 55.55 0.63 -18.83 16 23 Si 0.90 18.22 29.64 -169.99 -5.04 13.18 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 27 C -0.22 -5.66 9.74 -39.26 -0.38 -6.05 16 28 C -0.07 -1.66 8.57 -39.79 -0.34 -2.00 16 29 C -0.21 -2.26 7.89 -39.43 -0.31 -2.57 16 30 C -0.08 -0.71 9.69 -39.61 -0.38 -1.10 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.73 7.31 -51.93 -0.38 0.35 16 40 H 0.06 0.42 7.20 -51.93 -0.37 0.04 16 41 H 0.06 0.59 6.95 -51.93 -0.36 0.23 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.39 5.26 8.02 -40.82 -0.33 4.94 16 44 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 45 H 0.11 2.95 6.28 -52.49 -0.33 2.62 16 46 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 47 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 48 H 0.10 2.36 6.60 -52.49 -0.35 2.01 16 49 H 0.13 1.20 4.68 -52.48 -0.25 0.96 16 50 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -31.35 406.97 -11.15 -42.50 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.25 Total: 10.49 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -5.01 Total: -25.75 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.58 Total: -30.14 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.56 Total: -16.41 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.04 Total: 13.18 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.35 -11.15 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222877289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.313 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds