Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46921 * 2 1 4 4 C 1.38266 * 119.94521 * 89.99621 * 3 2 1 5 5 C 1.38141 * 120.05626 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.94689 * 0.25702 * 5 4 3 7 7 O 1.35903 * 120.05747 * 179.74604 * 6 5 4 8 8 C 1.42899 * 116.99721 * 174.42177 * 7 6 5 9 9 H 1.08999 * 109.47236 * 344.37660 * 8 7 6 10 10 C 1.52999 * 109.46971 * 104.37744 * 8 7 6 11 11 C 1.52996 * 109.47046 * 294.99274 * 10 8 7 12 12 C 1.50700 * 109.46839 * 224.37423 * 8 7 6 13 13 O 1.21278 * 120.00294 * 0.02562 * 12 8 7 14 14 N 1.34781 * 120.00001 * 180.02562 * 12 8 7 15 15 C 1.39242 * 119.99981 * 185.61885 * 14 12 8 16 16 C 1.39477 * 119.83001 * 215.66703 * 15 14 12 17 17 C 1.36377 * 120.16682 * 179.75789 * 16 15 14 18 18 C 1.40865 * 119.82588 * 0.51235 * 17 16 15 19 19 C 1.41157 * 120.16128 * 179.71638 * 18 17 16 20 20 H 1.08003 * 119.99630 * 158.74234 * 19 18 17 21 21 C 1.39903 * 119.99874 * 338.73977 * 19 18 17 22 22 N 1.30872 * 120.00372 * 332.75815 * 21 19 18 23 23 Si 1.86803 * 119.99723 * 152.76194 * 21 19 18 24 24 H 1.48498 * 109.47386 * 94.97924 * 23 21 19 25 25 H 1.48502 * 109.47062 * 214.98403 * 23 21 19 26 26 H 1.48502 * 109.47082 * 334.98045 * 23 21 19 27 27 C 1.40866 * 119.67488 * 359.74127 * 18 17 16 28 28 C 1.36378 * 119.82844 * 0.02562 * 27 18 17 29 29 C 1.38733 * 119.88301 * 359.46929 * 6 5 4 30 30 C 1.38139 * 119.94717 * 0.55294 * 29 6 5 31 31 H 1.09007 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47284 * 299.99964 * 1 2 3 33 33 H 1.08998 * 109.46831 * 60.00250 * 1 2 3 34 34 H 1.08998 * 109.47284 * 240.00036 * 2 1 3 35 35 H 1.08998 * 109.46831 * 119.99750 * 2 1 3 36 36 H 1.08002 * 119.96920 * 0.02562 * 4 3 2 37 37 H 1.08006 * 120.02842 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.47270 * 55.00037 * 10 8 7 39 39 H 1.09002 * 109.46630 * 175.00005 * 10 8 7 40 40 H 1.09000 * 109.47708 * 300.00494 * 11 10 8 41 41 H 1.09002 * 109.46809 * 60.00840 * 11 10 8 42 42 H 1.09003 * 109.47073 * 179.97438 * 11 10 8 43 43 H 0.96999 * 119.99610 * 5.61363 * 14 12 8 44 44 H 1.08004 * 119.91699 * 0.02562 * 16 15 14 45 45 H 1.08002 * 120.08459 * 180.24757 * 17 16 15 46 46 H 0.96999 * 119.99845 * 180.02562 * 22 21 19 47 47 H 1.08005 * 120.08667 * 179.97438 * 27 18 17 48 48 H 1.07996 * 119.91326 * 179.97438 * 28 27 18 49 49 H 1.08009 * 120.02586 * 180.24716 * 29 6 5 50 50 H 1.08003 * 119.97324 * 179.72004 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0716 1.1981 5 6 2.7222 3.3742 1.2008 6 6 2.9483 4.0313 0.0000 7 8 3.3958 5.3145 0.0001 8 6 3.7234 5.8873 -1.2675 9 1 3.8167 5.0955 -2.0108 10 6 2.6174 6.8562 -1.6904 11 6 1.3196 6.0795 -1.9207 12 6 5.0293 6.6317 -1.1598 13 8 5.6214 6.6677 -0.1020 14 7 5.5393 7.2574 -2.2392 15 6 6.7998 7.8452 -2.1722 16 6 7.0500 9.0309 -2.8628 17 6 8.2806 9.6151 -2.7981 18 6 9.3034 9.0122 -2.0399 19 6 10.5814 9.6076 -1.9729 20 1 11.2467 9.3678 -1.1565 21 6 10.9864 10.5083 -2.9639 22 7 10.4880 10.4209 -4.1708 23 14 12.2386 11.8356 -2.5643 24 1 13.5964 11.3634 -2.9365 25 1 11.9157 13.0670 -3.3289 26 1 12.1991 12.1316 -1.1096 27 6 9.0445 7.8119 -1.3495 28 6 7.8075 7.2420 -1.4199 29 6 2.7222 3.3742 -1.2007 30 6 2.2619 2.0718 -1.1981 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0822 1.5610 2.1326 37 1 2.9013 3.8822 2.1369 38 1 2.4634 7.5967 -0.9056 39 1 2.9083 7.3592 -2.6126 40 1 1.4736 5.3389 -2.7055 41 1 1.0287 5.5764 -0.9984 42 1 0.5315 6.7698 -2.2215 43 1 5.0282 7.2982 -3.0626 44 1 6.2659 9.4898 -3.4469 45 1 8.4717 10.5353 -3.3302 46 1 10.7691 11.0451 -4.8579 47 1 9.8240 7.3437 -0.7665 48 1 7.6077 6.3216 -0.8914 49 1 2.9013 3.8822 -2.1369 50 1 2.0814 1.5614 -2.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222877289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -52.057934 kcal Electronic energy + Delta-G solvation = -30012.948741 eV Core-core repulsion = 25969.093199 eV Total energy + Delta-G solvation = -4043.855543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.92889 -40.81833 -39.33875 -38.55322 -36.27146 -35.30289 -34.62517 -34.05538 -31.92702 -31.51969 -31.03318 -29.84719 -28.56927 -26.56983 -24.53966 -24.22527 -23.74524 -22.92869 -22.52364 -21.75380 -20.94514 -19.58029 -19.32920 -18.79963 -17.84089 -17.05267 -16.87588 -16.72558 -16.41648 -15.89571 -15.72682 -15.69637 -15.44103 -14.94990 -14.87443 -14.66557 -14.49705 -14.28705 -14.06263 -14.02050 -13.86925 -13.77001 -13.41231 -13.32672 -13.16430 -13.01945 -12.82320 -12.71370 -12.53030 -12.36475 -12.22272 -11.93155 -11.86825 -11.83992 -11.75131 -11.60245 -11.44127 -11.19357 -10.77869 -10.49488 -9.95345 -9.51711 -9.01205 -8.99825 -8.73574 -6.26991 0.38313 0.43977 0.75352 1.10331 1.35917 1.40375 1.52827 1.61308 1.78048 2.19488 2.57891 2.65396 2.78829 3.48832 3.58319 3.70146 3.72551 3.87243 3.92311 4.03866 4.17999 4.29951 4.35919 4.38978 4.42990 4.43667 4.53984 4.60230 4.67423 4.73919 4.83527 4.87962 4.99344 5.02426 5.06821 5.09367 5.11570 5.13928 5.18848 5.25270 5.30386 5.36467 5.39349 5.40513 5.44815 5.60474 5.72201 5.81039 5.86247 5.99193 6.04963 6.31590 6.38710 6.59308 6.65806 6.87373 6.94863 7.30246 8.22170 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.001810 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.678311 B =15461.873557 C =15940.425305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.080 4.080 5 C -0.169 4.169 6 C 0.105 3.895 7 O -0.309 6.309 8 C 0.075 3.925 9 H 0.129 0.871 10 C -0.131 4.131 11 C -0.147 4.147 12 C 0.492 3.508 13 O -0.565 6.565 14 N -0.632 5.632 15 C -0.005 4.005 16 C -0.099 4.099 17 C -0.182 4.182 18 C 0.080 3.920 19 C -0.499 4.499 20 H 0.073 0.927 21 C 0.047 3.953 22 N -0.803 5.803 23 Si 0.976 3.024 24 H -0.260 1.260 25 H -0.260 1.260 26 H -0.263 1.263 27 C -0.243 4.243 28 C -0.081 4.081 29 C -0.211 4.211 30 C -0.078 4.078 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.418 0.582 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.294 0.706 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.146 0.854 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 -14.578 -0.676 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.125 4.125 4 C -0.098 4.098 5 C -0.188 4.188 6 C 0.060 3.940 7 O -0.222 6.222 8 C 0.015 3.985 9 H 0.146 0.854 10 C -0.169 4.169 11 C -0.204 4.204 12 C 0.279 3.721 13 O -0.443 6.443 14 N -0.279 5.279 15 C -0.098 4.098 16 C -0.119 4.119 17 C -0.202 4.202 18 C 0.078 3.922 19 C -0.527 4.527 20 H 0.092 0.908 21 C -0.171 4.171 22 N -0.427 5.427 23 Si 0.796 3.204 24 H -0.185 1.185 25 H -0.184 1.184 26 H -0.187 1.187 27 C -0.263 4.263 28 C -0.101 4.101 29 C -0.230 4.230 30 C -0.096 4.096 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.256 0.744 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.164 0.836 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.998 -14.379 -0.018 25.449 hybrid contribution 0.869 0.751 -0.034 1.149 sum -20.130 -13.627 -0.052 24.309 Atomic orbital electron populations 1.21746 0.94290 1.02275 1.01901 1.20515 0.96426 0.91051 1.03585 1.20139 1.01797 0.97849 0.92728 1.21070 0.96915 0.92698 0.99136 1.20624 1.05889 0.96009 0.96243 1.19352 0.95754 0.83427 0.95456 1.86182 1.79503 1.25396 1.31150 1.22491 0.91933 0.97487 0.86550 0.85370 1.21992 0.94341 0.97544 1.03051 1.21809 0.95917 1.00748 1.01955 1.21192 0.87191 0.80139 0.83543 1.90713 1.62619 1.61205 1.29797 1.42730 1.16500 1.54364 1.14352 1.17085 0.85262 0.97773 1.09657 1.20461 0.97324 0.93594 1.00555 1.20778 0.92724 1.01350 1.05377 1.17955 0.93925 0.90127 0.90233 1.19760 1.00576 1.23549 1.08803 0.90847 1.26726 0.98649 0.98646 0.93120 1.69900 1.38251 1.32353 1.02151 0.85296 0.77943 0.77368 0.79776 1.18466 1.18356 1.18728 1.20697 0.96971 0.98828 1.09806 1.20288 0.92598 0.98479 0.98711 1.21459 1.07086 0.97460 0.96947 1.21121 0.96460 0.93169 0.98862 0.91306 0.93067 0.92752 0.90197 0.90515 0.83688 0.85974 0.91612 0.87360 0.90651 0.93653 0.90372 0.74374 0.85387 0.87501 0.89494 0.89093 0.88930 0.83637 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 71.98 0.71 -0.65 16 2 C -0.08 -0.85 6.06 29.85 0.18 -0.67 16 3 C -0.12 -2.02 5.13 -19.85 -0.10 -2.12 16 4 C -0.08 -1.49 9.69 22.25 0.22 -1.27 16 5 C -0.17 -4.05 9.99 22.36 0.22 -3.83 16 6 C 0.10 2.67 5.77 22.51 0.13 2.80 16 7 O -0.31 -9.37 9.02 -73.43 -0.66 -10.03 16 8 C 0.07 1.89 2.51 29.85 0.07 1.96 16 9 H 0.13 2.52 5.16 -2.39 -0.01 2.50 16 10 C -0.13 -2.44 5.58 30.59 0.17 -2.27 16 11 C -0.15 -2.10 8.66 71.98 0.62 -1.48 16 12 C 0.49 17.51 6.93 87.66 0.61 18.12 16 13 O -0.57 -26.65 14.35 16.01 0.23 -26.42 16 14 N -0.63 -21.21 5.21 -303.11 -1.58 -22.78 16 15 C 0.00 -0.21 6.24 38.56 0.24 0.03 16 16 C -0.10 -4.43 9.90 22.13 0.22 -4.21 16 17 C -0.18 -9.45 8.70 22.48 0.20 -9.25 16 18 C 0.08 4.48 5.59 -21.28 -0.12 4.36 16 19 C -0.50 -27.43 8.98 23.39 0.21 -27.22 16 20 H 0.07 3.97 7.98 -2.91 -0.02 3.95 16 21 C 0.05 2.34 4.93 85.24 0.42 2.76 16 22 N -0.80 -40.47 11.35 21.82 0.25 -40.23 16 23 Si 0.98 37.53 29.64 68.60 2.03 39.57 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 25 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 C -0.24 -13.12 9.74 22.48 0.22 -12.90 16 28 C -0.08 -4.07 8.57 22.13 0.19 -3.88 16 29 C -0.21 -4.12 7.89 22.36 0.18 -3.94 16 30 C -0.08 -1.27 9.69 22.25 0.22 -1.05 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.48 7.31 -2.39 -0.02 1.46 16 40 H 0.07 0.81 7.20 -2.39 -0.02 0.79 16 41 H 0.04 0.81 6.95 -2.39 -0.02 0.79 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.42 9.91 8.02 -92.71 -0.74 9.17 16 44 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 45 H 0.11 5.61 6.28 -2.91 -0.02 5.59 16 46 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 47 H 0.09 4.78 8.06 -2.91 -0.02 4.75 16 48 H 0.09 4.68 6.60 -2.91 -0.02 4.66 16 49 H 0.15 2.24 4.68 -2.91 -0.01 2.23 16 50 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -72.25 406.97 5.29 -66.96 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.22 Total: 37.66 kcal Atomic # 6 Polarization: -49.53 SS G_CDS: 4.80 Total: -44.72 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -1.33 Total: -63.01 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.43 Total: -36.45 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.57 kcal Total: -72.25 5.29 -66.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222877289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.901 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds