Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 H 1.08995 * 109.47201 * 305.00286 * 3 2 1 5 5 O 1.42899 * 109.46927 * 65.00432 * 3 2 1 6 6 C 1.35905 * 116.99982 * 267.16362 * 5 3 2 7 7 C 1.38756 * 120.05323 * 355.98096 * 6 5 3 8 8 C 1.38125 * 119.94213 * 180.30284 * 7 6 5 9 9 C 1.38285 * 120.05352 * 359.46608 * 8 7 6 10 10 C 1.50702 * 119.94210 * 180.25783 * 9 8 7 11 11 C 1.38249 * 120.11414 * 0.27971 * 9 8 7 12 12 C 1.38164 * 120.05281 * 0.02562 * 11 9 8 13 13 C 1.50698 * 120.02461 * 180.02562 * 12 11 9 14 14 C 1.50705 * 109.47005 * 184.99964 * 3 2 1 15 15 O 1.21278 * 120.00204 * 245.00077 * 14 3 2 16 16 N 1.34779 * 119.99688 * 65.00507 * 14 3 2 17 17 C 1.39233 * 119.99731 * 185.21510 * 16 14 3 18 18 C 1.39478 * 119.83476 * 213.91894 * 17 16 14 19 19 C 1.36372 * 120.17360 * 179.75549 * 18 17 16 20 20 C 1.40868 * 119.82560 * 0.52064 * 19 18 17 21 21 C 1.41158 * 120.16641 * 179.71399 * 20 19 18 22 22 H 1.07996 * 120.00307 * 210.66041 * 21 20 19 23 23 C 1.39906 * 119.99506 * 30.66405 * 21 20 19 24 24 N 1.30868 * 120.00252 * 9.00275 * 23 21 20 25 25 Si 1.86804 * 119.99611 * 189.00153 * 23 21 20 26 26 H 1.48504 * 109.46966 * 90.00138 * 25 23 21 27 27 H 1.48500 * 109.47184 * 209.99971 * 25 23 21 28 28 H 1.48499 * 109.47386 * 330.00360 * 25 23 21 29 29 C 1.40876 * 119.67178 * 359.73526 * 20 19 18 30 30 C 1.36367 * 119.82882 * 0.02562 * 29 20 19 31 31 H 1.09005 * 109.47324 * 299.99311 * 1 2 3 32 32 H 1.08992 * 109.47732 * 59.99721 * 1 2 3 33 33 H 1.09007 * 109.46971 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47324 * 240.00689 * 2 1 3 35 35 H 1.09001 * 109.47888 * 120.00125 * 2 1 3 36 36 H 1.08002 * 120.02969 * 0.04504 * 7 6 5 37 37 H 1.07999 * 119.96964 * 179.75110 * 8 7 6 38 38 H 1.09001 * 109.46938 * 90.00550 * 10 9 8 39 39 H 1.09005 * 109.47020 * 209.99972 * 10 9 8 40 40 H 1.08993 * 109.47081 * 330.00069 * 10 9 8 41 41 H 1.08002 * 119.97190 * 179.97438 * 11 9 8 42 42 H 1.08999 * 109.47571 * 90.00122 * 13 12 11 43 43 H 1.09001 * 109.47399 * 209.99405 * 13 12 11 44 44 H 1.08997 * 109.47569 * 329.99617 * 13 12 11 45 45 H 0.96998 * 119.99958 * 5.21523 * 16 14 3 46 46 H 1.08001 * 119.91494 * 0.02562 * 18 17 16 47 47 H 1.07998 * 120.09126 * 180.25522 * 19 18 17 48 48 H 0.97000 * 120.00016 * 179.97438 * 24 23 21 49 49 H 1.07997 * 120.08207 * 179.97438 * 29 20 19 50 50 H 1.07998 * 119.91591 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 0.4920 2.7730 1.2192 7 6 -0.2349 2.9057 0.0447 8 6 -1.4204 3.6144 0.0440 9 6 -1.8887 4.1820 1.2148 10 6 -3.1855 4.9498 1.2124 11 6 -1.1690 4.0467 2.3875 12 6 0.0207 3.3441 2.3920 13 6 0.8043 3.1966 3.6707 14 6 3.5419 1.4444 -0.1238 15 8 4.2250 1.8612 0.7875 16 7 4.1259 0.9830 -1.2474 17 6 5.5127 0.8831 -1.3205 18 6 6.1616 1.1075 -2.5346 19 6 7.5200 1.0164 -2.6129 20 6 8.2671 0.6838 -1.4660 21 6 9.6731 0.5815 -1.5403 22 1 10.1994 -0.1062 -0.8950 23 6 10.3847 1.3712 -2.4499 24 7 9.7746 2.3260 -3.1047 25 14 12.2057 1.0627 -2.7296 26 1 12.3780 0.0795 -3.8291 27 1 12.8731 2.3375 -3.0965 28 1 12.8136 0.5257 -1.4857 29 6 7.6043 0.4532 -0.2445 30 6 6.2457 0.5528 -0.1806 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.1282 2.4588 -0.8690 37 1 -1.9845 3.7214 -0.8707 38 1 -4.0104 4.2702 1.4263 39 1 -3.1486 5.7276 1.9752 40 1 -3.3353 5.4068 0.2344 41 1 -1.5366 4.4913 3.3005 42 1 0.4816 2.2959 4.1929 43 1 1.8668 3.1211 3.4391 44 1 0.6317 4.0659 4.3052 45 1 3.5801 0.7205 -2.0051 46 1 5.5871 1.3585 -3.4140 47 1 8.0213 1.1945 -3.5528 48 1 10.2681 2.8738 -3.7351 49 1 8.1705 0.1974 0.6388 50 1 5.7361 0.3760 0.7549 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222950085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -35.644644 kcal Electronic energy + Delta-G solvation = -30414.771791 eV Core-core repulsion = 26371.627981 eV Total energy + Delta-G solvation = -4043.143809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.94086 -39.59201 -38.02922 -37.02640 -34.56724 -34.16360 -33.07960 -32.68302 -31.83491 -29.65140 -29.23656 -27.90100 -27.32557 -26.09659 -24.77432 -23.24345 -22.17427 -21.37976 -20.91631 -20.58760 -19.55067 -18.40192 -17.52863 -17.26764 -16.19147 -16.12534 -15.85785 -15.21719 -15.07604 -14.77042 -14.61630 -14.10095 -13.99359 -13.96007 -13.75728 -13.39474 -13.35288 -13.03017 -12.83303 -12.70841 -12.64200 -12.38789 -12.16060 -12.07180 -12.05509 -11.82679 -11.78365 -11.54273 -11.40242 -11.30091 -11.16313 -11.04625 -10.95008 -10.75092 -10.56681 -9.96598 -9.55733 -9.43669 -9.17729 -8.96426 -8.93434 -8.05612 -7.58679 -6.95514 -6.70878 -4.34590 1.15248 1.25312 2.45038 2.76207 2.95690 3.05309 3.07917 3.11386 3.30810 3.52387 3.81520 3.94146 4.43228 4.57351 4.58056 4.63550 4.66374 4.74310 4.84710 4.95962 5.05856 5.10106 5.22551 5.27955 5.35236 5.41906 5.49172 5.51708 5.64620 5.64828 5.66867 5.69924 5.76203 5.83738 5.99753 6.11907 6.14969 6.17575 6.33194 6.37542 6.42332 6.63385 6.70320 6.86667 7.02390 7.15197 7.23140 7.29892 7.56775 7.67075 7.83291 8.01205 8.19987 8.25751 8.56653 8.67538 8.87514 8.95593 10.22504 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.021575 B = 0.001920 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.501195 B =14580.476533 C =14688.756644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.098 0.902 5 O -0.277 6.277 6 C 0.131 3.869 7 C -0.205 4.205 8 C -0.086 4.086 9 C -0.127 4.127 10 C -0.107 4.107 11 C -0.084 4.084 12 C -0.112 4.112 13 C -0.108 4.108 14 C 0.499 3.501 15 O -0.506 6.506 16 N -0.645 5.645 17 C -0.001 4.001 18 C -0.115 4.115 19 C -0.144 4.144 20 C 0.105 3.895 21 C -0.459 4.459 22 H 0.078 0.922 23 C 0.071 3.929 24 N -0.803 5.803 25 Si 0.913 3.087 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.209 4.209 30 C -0.079 4.079 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.395 0.605 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.280 0.720 49 H 0.096 0.904 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 0.511 3.459 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.115 0.885 5 O -0.189 6.189 6 C 0.085 3.915 7 C -0.223 4.223 8 C -0.104 4.104 9 C -0.127 4.127 10 C -0.164 4.164 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.165 4.165 14 C 0.283 3.717 15 O -0.380 6.380 16 N -0.290 5.290 17 C -0.093 4.093 18 C -0.135 4.135 19 C -0.164 4.164 20 C 0.103 3.897 21 C -0.489 4.489 22 H 0.096 0.904 23 C -0.145 4.145 24 N -0.429 5.429 25 Si 0.738 3.262 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.229 4.229 30 C -0.099 4.099 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.144 0.856 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.228 0.772 46 H 0.109 0.891 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.528 0.974 4.146 22.927 hybrid contribution 0.475 -0.075 -0.898 1.019 sum -22.052 0.898 3.248 22.308 Atomic orbital electron populations 1.21952 0.94592 1.02354 1.02358 1.22003 0.97089 0.94188 1.04390 1.22367 0.93902 0.94963 0.88091 0.88493 1.86224 1.35505 1.63482 1.33655 1.18870 0.85916 0.92885 0.93802 1.21292 0.97939 1.05503 0.97595 1.20749 0.95361 0.96592 0.97679 1.19772 0.97978 1.01471 0.93488 1.20696 0.94134 0.99084 1.02498 1.20741 0.93376 0.98286 0.97777 1.19261 0.96664 1.01206 0.94106 1.20640 1.00703 1.01687 0.93454 1.20062 0.88534 0.79136 0.83929 1.90741 1.64226 1.44221 1.38847 1.42853 1.06720 1.63688 1.15750 1.17143 0.80223 1.15793 0.96161 1.20233 0.95276 1.03214 0.94813 1.20942 0.91267 1.04868 0.99361 1.17699 0.93463 0.88439 0.90143 1.19549 0.91877 1.20011 1.17446 0.90418 1.25907 1.01029 0.93582 0.94008 1.69799 1.38280 1.14144 1.20661 0.86234 0.81788 0.78551 0.79656 1.19380 1.20324 1.18664 1.20724 0.93236 1.11791 0.97126 1.20251 0.94185 0.99317 0.96147 0.92029 0.92328 0.92020 0.89657 0.89995 0.85101 0.85995 0.91585 0.91788 0.91807 0.85588 0.91463 0.90482 0.91832 0.77165 0.89070 0.85889 0.90952 0.88548 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.44 37.16 0.31 -1.04 16 2 C -0.14 -1.45 5.61 -26.73 -0.15 -1.60 16 3 C 0.07 0.88 2.58 -27.88 -0.07 0.80 16 4 H 0.10 1.05 5.38 -51.93 -0.28 0.77 16 5 O -0.28 -4.11 8.27 -39.30 -0.32 -4.44 16 6 C 0.13 1.68 5.22 -39.22 -0.20 1.47 16 7 C -0.20 -2.19 7.10 -39.43 -0.28 -2.47 16 8 C -0.09 -0.81 9.69 -39.61 -0.38 -1.19 16 9 C -0.13 -1.18 5.88 -104.60 -0.62 -1.79 16 10 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 11 C -0.08 -0.84 9.35 -39.60 -0.37 -1.21 16 12 C -0.11 -1.33 5.89 -104.48 -0.62 -1.95 16 13 C -0.11 -1.21 9.79 36.00 0.35 -0.85 16 14 C 0.50 8.85 6.90 -10.98 -0.08 8.77 16 15 O -0.51 -11.48 14.22 -14.30 -0.20 -11.69 16 16 N -0.65 -11.06 5.19 -9.74 -0.05 -11.11 16 17 C 0.00 -0.03 6.27 -83.57 -0.52 -0.55 16 18 C -0.12 -2.59 9.89 -39.79 -0.39 -2.98 16 19 C -0.14 -3.68 8.59 -39.26 -0.34 -4.01 16 20 C 0.11 2.81 5.54 -106.80 -0.59 2.22 16 21 C -0.46 -12.16 9.04 -37.85 -0.34 -12.51 16 22 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 23 C 0.07 1.79 5.27 -17.34 -0.09 1.70 16 24 N -0.80 -20.81 10.87 55.55 0.60 -20.20 16 25 Si 0.91 18.76 29.57 -169.99 -5.03 13.73 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 28 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 29 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 30 C -0.08 -1.90 8.57 -39.79 -0.34 -2.24 16 31 H 0.06 0.62 6.20 -51.93 -0.32 0.30 16 32 H 0.06 0.44 6.81 -51.93 -0.35 0.08 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.13 1.20 4.60 -52.49 -0.24 0.96 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 40 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 44 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 45 H 0.39 5.09 8.70 -40.82 -0.36 4.74 16 46 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.12 3.21 6.29 -52.49 -0.33 2.88 16 48 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 49 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 50 H 0.10 2.40 6.45 -52.49 -0.34 2.06 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -31.62 403.94 -10.87 -42.49 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.21 Total: 10.58 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -4.74 Total: -25.45 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.55 Total: -31.31 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.53 Total: -16.12 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.62 -10.87 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222950085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.844 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds