Wall clock time and date at job start Tue Mar 31 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47453 * 274.98799 * 3 2 1 5 5 H 1.48505 * 109.47045 * 34.98901 * 3 2 1 6 6 H 1.48495 * 109.47421 * 154.98816 * 3 2 1 7 7 C 1.39884 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99793 * 151.64461 * 7 2 1 9 9 C 1.41141 * 120.00235 * 331.65431 * 7 2 1 10 10 C 1.40870 * 120.16473 * 157.85734 * 9 7 2 11 11 C 1.36357 * 119.83385 * 180.02562 * 10 9 7 12 12 C 1.39515 * 120.16461 * 0.02562 * 11 10 9 13 13 N 1.39143 * 119.83637 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99584 * 141.97174 * 13 12 11 15 15 S 1.71205 * 120.00213 * 353.96357 * 14 13 12 16 16 N 1.34776 * 119.99904 * 173.96667 * 14 13 12 17 17 C 1.46504 * 120.00312 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.24685 * 325.52453 * 17 16 14 19 19 C 1.52735 * 109.25538 * 206.08474 * 17 16 14 20 20 C 1.53318 * 108.33258 * 188.58766 * 19 17 16 21 21 C 1.52725 * 108.39449 * 69.96364 * 20 19 17 22 22 C 1.50629 * 110.56386 * 308.91634 * 21 20 19 23 23 C 1.38921 * 117.74928 * 197.51321 * 22 21 20 24 24 C 1.37932 * 120.54486 * 180.19618 * 23 22 21 25 25 C 1.38255 * 119.77554 * 0.04519 * 24 23 22 26 26 C 1.37938 * 119.76863 * 359.89353 * 25 24 23 27 27 C 1.37662 * 122.57451 * 17.56351 * 22 21 20 28 28 C 1.39510 * 120.32535 * 0.24790 * 12 11 10 29 29 C 1.36351 * 120.16776 * 359.46800 * 28 12 11 30 30 H 0.96996 * 120.00053 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.08443 * 0.04407 * 10 9 7 32 32 H 1.07998 * 119.91844 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99749 * 321.98065 * 13 12 11 34 34 H 0.96998 * 119.99991 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.68405 * 308.31969 * 19 17 16 36 36 H 1.09000 * 109.68163 * 68.88122 * 19 17 16 37 37 H 1.08998 * 109.70755 * 310.21941 * 20 19 17 38 38 H 1.09004 * 109.64560 * 189.67476 * 20 19 17 39 39 H 1.09004 * 109.25407 * 188.65020 * 21 20 19 40 40 H 1.08998 * 109.25397 * 69.18744 * 21 20 19 41 41 H 1.07995 * 119.72838 * 0.22340 * 23 22 21 42 42 H 1.08005 * 120.11112 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.12069 * 179.86947 * 25 24 23 44 44 H 1.08003 * 119.72463 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.91476 * 179.72324 * 28 12 11 46 46 H 1.08004 * 120.08846 * 180.26217 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1073 -1.3947 5 1 1.4969 2.6199 0.8029 6 1 3.5891 1.4121 0.5919 7 6 2.0083 -1.2114 0.0005 8 1 2.9911 -1.2677 -0.4436 9 6 1.4296 -2.3602 0.5814 10 6 1.8691 -3.6435 0.2012 11 6 1.3049 -4.7488 0.7663 12 6 0.2945 -4.6111 1.7184 13 7 -0.2768 -5.7437 2.2903 14 6 -0.6105 -5.7438 3.5961 15 16 -0.1922 -4.4116 4.5867 16 7 -1.2734 -6.7928 4.1221 17 6 -1.6366 -6.7928 5.5414 18 1 -0.8581 -6.2858 6.1115 19 6 -1.7597 -8.2347 6.0298 20 6 -2.3465 -8.2156 7.4461 21 6 -3.8083 -7.7826 7.3563 22 6 -3.9357 -6.5122 6.5572 23 6 -5.1119 -5.7839 6.6833 24 6 -5.2914 -4.6140 5.9749 25 6 -4.2935 -4.1620 5.1315 26 6 -3.1243 -4.8831 5.0059 27 6 -2.9405 -6.0600 5.7204 28 6 -0.1498 -3.3437 2.0958 29 6 0.4089 -2.2292 1.5436 30 1 -0.4850 0.8400 0.0004 31 1 2.6511 -3.7516 -0.5359 32 1 1.6411 -5.7333 0.4761 33 1 -0.4347 -6.5330 1.7492 34 1 -1.5107 -7.5474 3.5608 35 1 -2.4201 -8.7922 5.3656 36 1 -0.7750 -8.7019 6.0464 37 1 -1.7919 -7.5098 8.0643 38 1 -2.2851 -9.2130 7.8817 39 1 -4.1961 -7.6154 8.3612 40 1 -4.3875 -8.5701 6.8741 41 1 -5.8921 -6.1363 7.3416 42 1 -6.2086 -4.0531 6.0786 43 1 -4.4290 -3.2478 4.5727 44 1 -2.3454 -4.5296 4.3465 45 1 -0.9355 -3.2449 2.8302 46 1 0.0668 -1.2485 1.8398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225459495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:39 Heat of formation + Delta-G solvation = 64.606529 kcal Electronic energy + Delta-G solvation = -27818.560817 eV Core-core repulsion = 24184.402663 eV Total energy + Delta-G solvation = -3634.158154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48708 -38.92698 -37.33947 -36.12667 -34.76119 -33.27768 -31.23876 -30.26089 -29.57295 -29.25658 -28.27259 -25.20308 -23.92266 -23.41987 -22.68015 -22.07605 -21.20930 -20.60172 -19.57670 -18.00886 -17.41772 -17.38603 -16.63375 -15.78174 -15.41754 -15.37897 -15.19168 -14.73409 -14.46203 -14.07948 -14.00615 -13.76783 -13.33881 -13.14092 -12.83243 -12.70877 -12.40716 -12.24378 -12.11117 -11.97634 -11.80335 -11.43786 -11.31798 -11.24638 -11.13783 -11.05721 -10.74200 -10.69271 -10.62279 -10.40885 -9.96384 -9.59685 -9.24619 -9.00282 -8.63165 -8.53493 -7.73479 -7.43470 -7.00554 -6.87260 -6.26490 -4.34476 1.39511 1.53064 1.66436 2.39611 2.78334 3.00464 3.05669 3.09389 3.13809 3.26146 3.87335 3.89150 3.95061 4.41431 4.50007 4.51550 4.67251 4.79756 4.95913 5.10150 5.23397 5.28051 5.33651 5.44879 5.54669 5.60221 5.66745 5.74911 5.77023 5.91318 5.97039 6.05974 6.14617 6.19835 6.32070 6.33330 6.55826 6.57576 6.73685 6.79864 6.95490 6.97029 7.09474 7.15125 7.18902 7.28149 7.54276 7.62354 7.91550 8.01355 8.15915 8.21510 8.57127 8.80667 8.93039 10.00194 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002682 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.609492 B =10438.397313 C =11517.719883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.083 3.917 3 Si 0.901 3.099 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.122 3.878 10 C -0.230 4.230 11 C -0.076 4.076 12 C -0.049 4.049 13 N -0.584 5.584 14 C 0.537 3.463 15 S -0.631 6.631 16 N -0.693 5.693 17 C 0.192 3.808 18 H 0.124 0.876 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.080 4.080 22 C -0.074 4.074 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.096 4.096 27 C -0.094 4.094 28 C -0.035 4.035 29 C -0.174 4.174 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.390 0.610 34 H 0.392 0.608 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.151 0.849 45 H 0.114 0.886 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -15.054 9.643 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.251 4.251 11 C -0.096 4.096 12 C -0.142 4.142 13 N -0.201 5.201 14 C 0.178 3.822 15 S -0.500 6.500 16 N -0.325 5.325 17 C 0.087 3.913 18 H 0.142 0.858 19 C -0.163 4.163 20 C -0.152 4.152 21 C -0.117 4.117 22 C -0.075 4.075 23 C -0.155 4.155 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.116 4.116 27 C -0.095 4.095 28 C -0.056 4.056 29 C -0.194 4.194 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.168 0.832 45 H 0.132 0.868 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.016 -13.947 10.355 19.571 hybrid contribution -0.179 -0.538 -1.084 1.223 sum -9.195 -14.486 9.271 19.502 Atomic orbital electron populations 1.69908 1.08000 1.30021 1.30801 1.25984 0.94524 1.01677 0.91720 0.86414 0.81393 0.80618 0.79131 1.19471 1.19741 1.18044 1.19609 1.02924 0.93023 1.32448 0.89968 1.17669 0.89891 0.91733 0.88796 1.20405 1.06349 0.92223 1.06093 1.19943 0.94900 0.97179 0.97611 1.16855 1.05562 0.84187 1.07586 1.41990 1.56245 1.16348 1.05536 1.22431 0.83163 0.90340 0.86290 1.93315 1.72543 1.28076 1.56076 1.44964 1.56778 1.18989 1.11737 1.20036 0.95681 0.95834 0.79766 0.85825 1.21823 1.01953 0.94954 0.97608 1.21482 0.95676 1.02013 0.96031 1.20473 0.97066 0.94675 0.99446 1.19521 0.93719 0.96507 0.97755 1.20984 0.97220 0.96058 1.01206 1.21080 0.98971 0.96429 0.96974 1.21178 0.93968 1.00277 0.99333 1.22349 0.97400 0.92957 0.98884 1.19725 0.94748 0.96520 0.98519 1.20524 0.98566 0.90698 0.95849 1.20670 1.01926 0.96954 0.99874 0.90414 0.88622 0.89531 0.77397 0.77217 0.91288 0.90645 0.90862 0.90894 0.90738 0.90879 0.86670 0.86561 0.86253 0.83188 0.86830 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.23 11.49 55.54 0.64 -18.59 16 2 C 0.08 2.04 4.89 -17.34 -0.08 1.95 16 3 Si 0.90 18.22 29.64 -169.99 -5.04 13.18 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.69 8.97 -37.86 -0.34 -12.03 16 8 H 0.08 2.03 7.98 -52.49 -0.42 1.61 16 9 C 0.12 3.20 5.58 -106.80 -0.60 2.60 16 10 C -0.23 -5.46 9.74 -39.26 -0.38 -5.84 16 11 C -0.08 -1.61 9.90 -39.78 -0.39 -2.01 16 12 C -0.05 -1.04 6.02 -83.59 -0.50 -1.55 16 13 N -0.58 -9.68 5.30 -11.28 -0.06 -9.74 16 14 C 0.54 8.87 6.42 -86.92 -0.56 8.31 16 15 S -0.63 -13.31 21.37 -107.50 -2.30 -15.60 16 16 N -0.69 -8.41 4.83 -56.82 -0.27 -8.69 16 17 C 0.19 2.28 2.44 -69.25 -0.17 2.11 16 18 H 0.12 1.80 6.77 -51.93 -0.35 1.44 16 19 C -0.13 -1.03 5.44 -26.70 -0.15 -1.17 16 20 C -0.11 -0.85 5.97 -26.71 -0.16 -1.01 16 21 C -0.08 -0.65 5.67 -28.06 -0.16 -0.80 16 22 C -0.07 -0.85 5.74 -104.61 -0.60 -1.45 16 23 C -0.14 -1.54 9.61 -39.44 -0.38 -1.92 16 24 C -0.12 -1.43 10.05 -39.69 -0.40 -1.83 16 25 C -0.13 -1.88 10.05 -39.69 -0.40 -2.28 16 26 C -0.10 -1.52 8.53 -39.44 -0.34 -1.86 16 27 C -0.09 -1.25 5.55 -104.62 -0.58 -1.83 16 28 C -0.03 -0.83 7.75 -39.79 -0.31 -1.14 16 29 C -0.17 -4.53 8.70 -39.26 -0.34 -4.88 16 30 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 31 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.39 4.96 8.84 -40.82 -0.36 4.60 16 34 H 0.39 3.52 8.62 -40.82 -0.35 3.17 16 35 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.12 1.02 8.05 -52.49 -0.42 0.60 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 44 H 0.15 2.74 3.73 -34.68 -0.13 2.62 16 45 H 0.11 2.73 5.88 -40.05 -0.24 2.50 16 46 H 0.11 3.02 6.38 -52.48 -0.33 2.69 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -30.21 376.50 -14.15 -44.37 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -5.96 Total: 16.03 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -6.83 Total: -26.62 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.30 Total: -37.02 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.04 Total: 13.18 kcal Atomic # 16 Polarization: -13.31 SS G_CDS: -2.30 Total: -15.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.21 -14.15 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225459495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.972 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds