Wall clock time and date at job start Tue Mar 31 2020 05:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86795 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47453 * 274.98799 * 3 2 1 5 5 H 1.48505 * 109.47045 * 34.98901 * 3 2 1 6 6 H 1.48495 * 109.47421 * 154.98816 * 3 2 1 7 7 C 1.39884 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99793 * 151.64461 * 7 2 1 9 9 C 1.41141 * 120.00235 * 331.65431 * 7 2 1 10 10 C 1.40870 * 120.16473 * 157.85734 * 9 7 2 11 11 C 1.36357 * 119.83385 * 180.02562 * 10 9 7 12 12 C 1.39515 * 120.16461 * 0.02562 * 11 10 9 13 13 N 1.39143 * 119.83637 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99584 * 141.97174 * 13 12 11 15 15 S 1.71205 * 120.00213 * 353.96357 * 14 13 12 16 16 N 1.34776 * 119.99904 * 173.96667 * 14 13 12 17 17 C 1.46504 * 120.00312 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.24685 * 325.52453 * 17 16 14 19 19 C 1.52735 * 109.25538 * 206.08474 * 17 16 14 20 20 C 1.53318 * 108.33258 * 188.58766 * 19 17 16 21 21 C 1.52725 * 108.39449 * 69.96364 * 20 19 17 22 22 C 1.50629 * 110.56386 * 308.91634 * 21 20 19 23 23 C 1.38921 * 117.74928 * 197.51321 * 22 21 20 24 24 C 1.37932 * 120.54486 * 180.19618 * 23 22 21 25 25 C 1.38255 * 119.77554 * 0.04519 * 24 23 22 26 26 C 1.37938 * 119.76863 * 359.89353 * 25 24 23 27 27 C 1.37662 * 122.57451 * 17.56351 * 22 21 20 28 28 C 1.39510 * 120.32535 * 0.24790 * 12 11 10 29 29 C 1.36351 * 120.16776 * 359.46800 * 28 12 11 30 30 H 0.96996 * 120.00053 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.08443 * 0.04407 * 10 9 7 32 32 H 1.07998 * 119.91844 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99749 * 321.98065 * 13 12 11 34 34 H 0.96998 * 119.99991 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.68405 * 308.31969 * 19 17 16 36 36 H 1.09000 * 109.68163 * 68.88122 * 19 17 16 37 37 H 1.08998 * 109.70755 * 310.21941 * 20 19 17 38 38 H 1.09004 * 109.64560 * 189.67476 * 20 19 17 39 39 H 1.09004 * 109.25407 * 188.65020 * 21 20 19 40 40 H 1.08998 * 109.25397 * 69.18744 * 21 20 19 41 41 H 1.07995 * 119.72838 * 0.22340 * 23 22 21 42 42 H 1.08005 * 120.11112 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.12069 * 179.86947 * 25 24 23 44 44 H 1.08003 * 119.72463 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.91476 * 179.72324 * 28 12 11 46 46 H 1.08004 * 120.08846 * 180.26217 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1073 -1.3947 5 1 1.4969 2.6199 0.8029 6 1 3.5891 1.4121 0.5919 7 6 2.0083 -1.2114 0.0005 8 1 2.9911 -1.2677 -0.4436 9 6 1.4296 -2.3602 0.5814 10 6 1.8691 -3.6435 0.2012 11 6 1.3049 -4.7488 0.7663 12 6 0.2945 -4.6111 1.7184 13 7 -0.2768 -5.7437 2.2903 14 6 -0.6105 -5.7438 3.5961 15 16 -0.1922 -4.4116 4.5867 16 7 -1.2734 -6.7928 4.1221 17 6 -1.6366 -6.7928 5.5414 18 1 -0.8581 -6.2858 6.1115 19 6 -1.7597 -8.2347 6.0298 20 6 -2.3465 -8.2156 7.4461 21 6 -3.8083 -7.7826 7.3563 22 6 -3.9357 -6.5122 6.5572 23 6 -5.1119 -5.7839 6.6833 24 6 -5.2914 -4.6140 5.9749 25 6 -4.2935 -4.1620 5.1315 26 6 -3.1243 -4.8831 5.0059 27 6 -2.9405 -6.0600 5.7204 28 6 -0.1498 -3.3437 2.0958 29 6 0.4089 -2.2292 1.5436 30 1 -0.4850 0.8400 0.0004 31 1 2.6511 -3.7516 -0.5359 32 1 1.6411 -5.7333 0.4761 33 1 -0.4347 -6.5330 1.7492 34 1 -1.5107 -7.5474 3.5608 35 1 -2.4201 -8.7922 5.3656 36 1 -0.7750 -8.7019 6.0464 37 1 -1.7919 -7.5098 8.0643 38 1 -2.2851 -9.2130 7.8817 39 1 -4.1961 -7.6154 8.3612 40 1 -4.3875 -8.5701 6.8741 41 1 -5.8921 -6.1363 7.3416 42 1 -6.2086 -4.0531 6.0786 43 1 -4.4290 -3.2478 4.5727 44 1 -2.3454 -4.5296 4.3465 45 1 -0.9355 -3.2449 2.8302 46 1 0.0668 -1.2485 1.8398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225459495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:38 Heat of formation + Delta-G solvation = 49.540321 kcal Electronic energy + Delta-G solvation = -27819.214137 eV Core-core repulsion = 24184.402663 eV Total energy + Delta-G solvation = -3634.811473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52802 -40.42427 -38.79441 -37.27834 -36.03692 -34.91798 -32.37801 -31.44070 -31.14580 -30.85527 -29.35299 -26.86129 -25.31773 -24.43600 -23.61702 -23.24382 -22.86686 -22.27173 -20.47175 -19.45053 -19.21708 -18.80308 -17.73910 -17.10888 -16.84655 -16.68558 -16.28204 -15.88806 -15.85572 -15.60332 -15.09137 -14.79870 -14.54225 -14.45950 -14.06550 -13.97524 -13.87069 -13.67476 -13.57179 -13.14568 -12.99343 -12.80397 -12.74039 -12.58193 -12.36068 -12.32199 -12.13902 -11.91031 -11.76721 -11.53508 -11.46144 -11.31382 -10.94372 -10.56667 -9.68061 -9.58950 -9.47382 -9.17526 -8.78905 -8.54881 -7.98777 -6.26721 0.14576 0.41354 0.53868 0.93506 1.09345 1.25057 1.37189 1.48886 1.56321 1.67498 2.17659 2.66298 2.67845 2.90879 3.62085 3.69057 3.75812 3.96913 4.05415 4.14457 4.24901 4.32730 4.38821 4.47396 4.52706 4.55316 4.67715 4.72386 4.82798 4.86103 4.99700 5.04292 5.09380 5.11241 5.13905 5.18777 5.20220 5.31361 5.33982 5.39030 5.48484 5.61947 5.67034 5.72061 5.73098 5.82386 6.01158 6.10973 6.16656 6.21996 6.34870 6.57234 6.68089 6.90111 7.03860 8.20837 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.002682 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.609492 B =10438.397313 C =11517.719883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.044 3.956 3 Si 0.973 3.027 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.244 4.244 11 C -0.070 4.070 12 C -0.031 4.031 13 N -0.578 5.578 14 C 0.567 3.433 15 S -0.719 6.719 16 N -0.661 5.661 17 C 0.190 3.810 18 H 0.095 0.905 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.078 4.078 22 C -0.070 4.070 23 C -0.135 4.135 24 C -0.118 4.118 25 C -0.156 4.156 26 C -0.126 4.126 27 C -0.105 4.105 28 C -0.041 4.041 29 C -0.200 4.200 30 H 0.292 0.708 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.417 0.583 34 H 0.416 0.584 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 -19.110 10.738 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.101 0.899 9 C 0.091 3.909 10 C -0.265 4.265 11 C -0.090 4.090 12 C -0.125 4.125 13 N -0.199 5.199 14 C 0.204 3.796 15 S -0.590 6.590 16 N -0.291 5.291 17 C 0.086 3.914 18 H 0.113 0.887 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.115 4.115 22 C -0.071 4.071 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.174 4.174 26 C -0.145 4.145 27 C -0.106 4.106 28 C -0.062 4.062 29 C -0.221 4.221 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.257 0.743 34 H 0.256 0.744 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.125 0.875 44 H 0.138 0.862 45 H 0.122 0.878 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.143 -18.088 11.444 23.686 hybrid contribution -0.016 0.478 -1.270 1.357 sum -10.159 -17.610 10.174 22.733 Atomic orbital electron populations 1.69943 1.09444 1.31209 1.31822 1.26806 0.95176 1.04773 0.90789 0.85339 0.79545 0.76105 0.79724 1.17878 1.19320 1.18258 1.19842 1.03417 0.94296 1.34355 0.89862 1.17978 0.90420 0.93269 0.89278 1.20654 1.07001 0.92082 1.06731 1.20279 0.93733 0.98508 0.96500 1.16786 1.04604 0.84541 1.06590 1.41601 1.56544 1.16132 1.05652 1.21821 0.82328 0.89768 0.85655 1.93581 1.75512 1.31725 1.58143 1.44934 1.53765 1.17899 1.12514 1.20184 0.94212 0.98421 0.78586 0.88690 1.21853 1.03414 0.91770 0.98436 1.21521 0.94960 1.03355 0.95216 1.20584 0.97897 0.93176 0.99801 1.19976 0.92777 0.97677 0.96650 1.21423 0.97962 0.95190 1.00707 1.21344 0.98975 0.97150 0.96182 1.21233 0.94918 1.00409 1.00870 1.22195 0.97292 0.94815 1.00243 1.19829 0.95796 0.95954 0.99024 1.20547 0.98475 0.91770 0.95453 1.20542 1.03571 0.96540 1.01475 0.89770 0.87364 0.85139 0.74319 0.74448 0.89220 0.89385 0.92218 0.87878 0.89110 0.88639 0.83339 0.84444 0.87500 0.86220 0.87753 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.68 11.49 21.82 0.25 -42.43 16 2 C 0.04 2.23 4.89 85.23 0.42 2.65 16 3 Si 0.97 38.84 29.64 68.60 2.03 40.87 16 4 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.49 -26.73 8.97 23.38 0.21 -26.52 16 8 H 0.08 4.31 7.98 -2.91 -0.02 4.29 16 9 C 0.09 5.14 5.58 -21.27 -0.12 5.02 16 10 C -0.24 -11.73 9.74 22.48 0.22 -11.51 16 11 C -0.07 -2.89 9.90 22.14 0.22 -2.67 16 12 C -0.03 -1.34 6.02 38.60 0.23 -1.11 16 13 N -0.58 -18.34 5.30 -189.60 -1.00 -19.34 16 14 C 0.57 18.51 6.42 179.06 1.15 19.66 16 15 S -0.72 -31.94 21.37 -56.49 -1.21 -33.14 16 16 N -0.66 -14.77 4.83 -333.67 -1.61 -16.38 16 17 C 0.19 4.24 2.44 44.13 0.11 4.35 16 18 H 0.10 2.77 6.77 -2.39 -0.02 2.76 16 19 C -0.12 -1.45 5.44 30.61 0.17 -1.28 16 20 C -0.11 -1.20 5.97 30.61 0.18 -1.02 16 21 C -0.08 -0.90 5.67 29.73 0.17 -0.73 16 22 C -0.07 -1.41 5.74 -19.86 -0.11 -1.52 16 23 C -0.13 -2.67 9.61 22.36 0.21 -2.45 16 24 C -0.12 -2.81 10.05 22.20 0.22 -2.59 16 25 C -0.16 -4.77 10.05 22.20 0.22 -4.54 16 26 C -0.13 -4.13 8.53 22.36 0.19 -3.94 16 27 C -0.10 -2.69 5.55 -19.86 -0.11 -2.80 16 28 C -0.04 -2.05 7.75 22.14 0.17 -1.88 16 29 C -0.20 -11.22 8.70 22.48 0.20 -11.03 16 30 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 31 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.42 9.21 8.84 -92.71 -0.82 8.39 16 34 H 0.42 5.91 8.62 -92.71 -0.80 5.11 16 35 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 38 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.09 0.83 8.13 -2.38 -0.02 0.81 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.15 1.94 8.05 -2.91 -0.02 1.92 16 42 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 44 H 0.12 4.69 3.73 -14.23 -0.05 4.64 16 45 H 0.10 5.43 5.88 -10.81 -0.06 5.37 16 46 H 0.08 5.03 6.38 -2.91 -0.02 5.01 16 Total: -1.00 -73.94 376.50 1.73 -72.21 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -0.68 Total: 42.15 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.95 Total: -43.92 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -2.36 Total: -78.15 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: -31.94 SS G_CDS: -1.21 Total: -33.14 kcal Total: -73.94 1.73 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225459495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.745 kcal (2) G-P(sol) polarization free energy of solvation -73.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds