Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39757 * 125.83419 * 2 1 4 4 C 1.36131 * 107.82591 * 180.13048 * 3 2 1 5 5 N 1.39401 * 126.21516 * 179.88234 * 4 3 2 6 6 C 1.34775 * 120.00560 * 359.68644 * 5 4 3 7 7 O 1.21647 * 119.99586 * 359.97438 * 6 5 4 8 8 C 1.47222 * 120.00141 * 179.97438 * 6 5 4 9 9 C 1.47068 * 127.20410 * 0.26864 * 8 6 5 10 10 C 1.34137 * 105.97285 * 180.11898 * 9 8 6 11 11 O 1.34273 * 109.16932 * 359.63174 * 10 9 8 12 12 C 1.33689 * 110.91155 * 0.24614 * 11 10 9 13 13 Br 1.89100 * 125.82534 * 179.97438 * 12 11 10 14 14 N 1.35265 * 107.56258 * 359.61642 * 4 3 2 15 15 C 1.46496 * 126.04765 * 180.22337 * 14 4 3 16 16 C 1.50693 * 109.47256 * 89.99733 * 15 14 4 17 17 H 1.07996 * 120.00322 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00077 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00289 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99750 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46865 * 90.00333 * 20 18 16 22 22 H 1.48503 * 109.47078 * 209.99646 * 20 18 16 23 23 H 1.48494 * 109.47416 * 329.99999 * 20 18 16 24 24 N 1.30849 * 125.84133 * 179.69699 * 2 1 3 25 25 H 1.09004 * 109.47061 * 270.27164 * 1 2 3 26 26 H 1.08993 * 109.47229 * 30.28154 * 1 2 3 27 27 H 1.08997 * 109.46398 * 150.27970 * 1 2 3 28 28 H 1.08004 * 126.08768 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99662 * 179.68724 * 5 4 3 30 30 H 1.07992 * 127.01603 * 0.02562 * 9 8 6 31 31 H 1.08002 * 125.41881 * 179.90444 * 10 9 8 32 32 H 1.09000 * 109.46704 * 210.00414 * 15 14 4 33 33 H 1.09002 * 109.46754 * 330.00067 * 15 14 4 34 34 H 0.96998 * 120.00490 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6199 0.7122 -0.0030 5 7 4.7508 1.5271 -0.0063 6 6 4.6153 2.8681 -0.0131 7 8 3.5059 3.3672 -0.0169 8 6 5.8098 3.7287 -0.0161 9 6 7.2160 3.2981 -0.0178 10 6 7.9465 4.4231 -0.0176 11 8 7.1229 5.4836 -0.0241 12 6 5.8439 5.0944 -0.0234 13 35 4.3387 6.2391 -0.0304 14 7 3.6094 -0.6404 0.0039 15 6 4.7871 -1.5116 0.0083 16 6 5.1910 -1.8031 1.4305 17 1 4.6267 -1.3820 2.2493 18 6 6.2805 -2.6085 1.6865 19 7 6.6327 -2.8633 2.9277 20 14 7.2563 -3.3376 0.2703 21 1 8.3479 -2.4055 -0.1103 22 1 7.8391 -4.6379 0.6883 23 1 6.3578 -3.5489 -0.8930 24 7 2.2732 -1.0607 0.0056 25 1 -0.3633 0.0049 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 1.9901 2.1598 -0.0004 29 1 5.6354 1.1291 -0.0036 30 1 7.5852 2.2833 -0.0175 31 1 9.0255 4.4688 -0.0171 32 1 4.5498 -2.4457 -0.5009 33 1 5.6084 -1.0148 -0.5081 34 1 7.3990 -3.4301 3.1078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225548161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = 77.348009 kcal Electronic energy + Delta-G solvation = -22476.864195 eV Core-core repulsion = 18846.553047 eV Total energy + Delta-G solvation = -3630.311148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 353.016 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.88881 -40.89127 -39.06076 -34.84678 -33.79736 -33.33602 -32.31801 -32.12863 -29.61592 -29.21277 -28.22820 -26.33251 -24.24715 -22.54651 -21.92323 -20.73243 -19.67991 -19.47029 -18.11595 -17.21917 -16.70569 -16.70161 -16.04337 -15.34971 -15.14890 -14.66597 -14.32179 -13.89829 -13.84438 -13.30635 -13.12947 -12.99594 -12.72421 -12.62305 -12.35628 -11.90982 -11.83969 -11.52484 -11.17124 -10.90379 -10.81042 -10.51737 -10.25227 -10.16999 -9.98595 -9.77953 -9.55808 -8.97781 -8.88717 -7.97046 -7.49608 -6.35461 -4.39990 0.53607 0.79855 1.69697 2.52712 2.66843 3.02273 3.03805 3.14974 3.15983 3.25453 3.62096 3.66094 4.11771 4.31292 4.44580 4.90497 4.92004 5.15062 5.28836 5.34176 5.59567 5.84700 6.01795 6.02291 6.11487 6.19981 6.28250 6.34747 6.44903 6.64065 6.73714 7.17961 7.42479 7.51035 7.73687 8.13290 8.26810 8.55341 8.71391 9.18982 10.76757 Molecular weight = 353.02amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003916 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.740825 B = 7149.000442 C = 9194.977139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.289 4.289 4 C 0.306 3.694 5 N -0.630 5.630 6 C 0.589 3.411 7 O -0.494 6.494 8 C -0.182 4.182 9 C -0.184 4.184 10 C -0.013 4.013 11 O -0.159 6.159 12 C 0.047 3.953 13 Br 0.087 6.913 14 N -0.344 5.344 15 C 0.230 3.770 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.081 3.919 19 N -0.883 5.883 20 Si 0.871 3.129 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.263 1.263 24 N -0.281 5.281 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.165 0.835 29 H 0.415 0.585 30 H 0.170 0.830 31 H 0.219 0.781 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 18.486 -8.148 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.321 4.321 4 C 0.084 3.916 5 N -0.276 5.276 6 C 0.376 3.624 7 O -0.369 6.369 8 C -0.190 4.190 9 C -0.204 4.204 10 C -0.081 4.081 11 O -0.055 6.055 12 C -0.085 4.085 13 Br 0.171 6.829 14 N -0.129 5.129 15 C 0.111 3.889 16 C -0.584 4.584 17 H 0.100 0.900 18 C -0.124 4.124 19 N -0.519 5.519 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.187 1.187 24 N -0.106 5.106 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.182 0.818 29 H 0.251 0.749 30 H 0.188 0.812 31 H 0.235 0.765 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.175 18.135 -8.027 19.833 hybrid contribution 1.828 -0.413 -0.413 1.919 sum 2.003 17.722 -8.441 19.732 Atomic orbital electron populations 1.20035 0.87375 1.02389 1.02339 1.22060 0.96600 0.90953 1.01405 1.21309 0.88879 1.00625 1.21284 1.17823 0.87904 0.83056 1.02840 1.42436 1.08310 1.05172 1.71720 1.16855 0.87698 0.80721 0.77144 1.90794 1.25093 1.73566 1.47419 1.21044 0.94437 0.91842 1.11667 1.23058 0.90267 1.00911 1.06191 1.24118 0.96331 0.83289 1.04318 1.83880 1.14092 1.36453 1.71108 1.24130 0.84578 0.92959 1.06816 1.96972 1.25994 1.62797 1.97160 1.48887 1.06234 1.01909 1.55845 1.19932 0.79267 0.90066 0.99682 1.21200 1.14242 1.32632 0.90314 0.90014 1.24818 0.96627 0.95209 0.95752 1.69870 1.26824 1.36669 1.18537 0.86937 0.80757 0.79797 0.82869 1.19686 1.20328 1.18728 1.77368 0.85708 1.21731 1.25810 0.91130 0.91029 0.91514 0.81764 0.74865 0.81237 0.76450 0.92684 0.94842 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.09 7.21 -82.44 -0.59 0.49 16 3 C -0.29 -5.83 9.58 -39.77 -0.38 -6.21 16 4 C 0.31 6.36 7.66 -153.22 -1.17 5.19 16 5 N -0.63 -11.10 5.41 -12.50 -0.07 -11.16 16 6 C 0.59 9.74 7.77 -12.61 -0.10 9.64 16 7 O -0.49 -8.90 12.47 5.24 0.07 -8.83 16 8 C -0.18 -2.49 6.32 -103.25 -0.65 -3.15 16 9 C -0.18 -1.96 10.60 -37.45 -0.40 -2.36 16 10 C -0.01 -0.11 12.03 29.29 0.35 0.24 16 11 O -0.16 -1.73 10.53 7.40 0.08 -1.65 16 12 C 0.05 0.59 7.86 30.15 0.24 0.83 16 13 Br 0.09 1.02 32.42 -68.01 -2.20 -1.18 16 14 N -0.34 -7.86 3.60 -61.59 -0.22 -8.08 16 15 C 0.23 5.34 5.07 -5.20 -0.03 5.31 16 16 C -0.55 -14.78 9.94 -34.44 -0.34 -15.12 16 17 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.88 -25.42 13.96 55.43 0.77 -24.64 16 20 Si 0.87 19.19 27.47 -169.99 -4.67 14.52 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 24 N -0.28 -6.42 12.56 33.65 0.42 -6.00 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.17 3.19 5.82 -52.48 -0.31 2.88 16 29 H 0.41 6.61 7.13 -40.82 -0.29 6.32 16 30 H 0.17 1.53 7.73 -52.49 -0.41 1.12 16 31 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.06 1.30 7.20 -51.93 -0.37 0.93 16 33 H 0.03 0.69 6.93 -51.93 -0.36 0.33 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -32.75 322.78 -6.77 -39.52 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.02 Total: 6.24 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.80 Total: -3.60 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.91 Total: -49.89 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.14 Total: -10.49 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.67 Total: 14.52 kcal Atomic # 35 Polarization: 1.02 SS G_CDS: -2.20 Total: -1.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.75 -6.77 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225548161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.871 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds