Wall clock time and date at job start Tue Mar 31 2020 05:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86796 * 120.00350 * 2 1 4 4 H 1.48503 * 109.47202 * 270.00138 * 3 2 1 5 5 H 1.48494 * 109.47202 * 30.00094 * 3 2 1 6 6 H 1.48504 * 109.47282 * 150.00259 * 3 2 1 7 7 C 1.39907 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99984 * 208.56029 * 7 2 1 9 9 C 1.41154 * 119.99901 * 28.56245 * 7 2 1 10 10 C 1.40870 * 120.16453 * 197.60777 * 9 7 2 11 11 C 1.36373 * 119.83207 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16496 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83328 * 179.97438 * 12 11 10 14 14 C 1.34786 * 119.99900 * 142.94471 * 13 12 11 15 15 O 1.21272 * 119.99793 * 6.35258 * 14 13 12 16 16 C 1.50697 * 119.99600 * 186.35064 * 14 13 12 17 17 C 1.50698 * 115.55284 * 66.91586 * 16 14 13 18 18 C 1.38237 * 119.99885 * 40.80840 * 17 16 14 19 19 C 1.38242 * 119.99875 * 179.97438 * 18 17 16 20 20 C 1.38227 * 119.99708 * 0.07492 * 19 18 17 21 21 N 1.48022 * 119.99492 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99868 * 179.87055 * 21 20 19 23 23 O 1.21799 * 120.00426 * 359.86079 * 21 20 19 24 24 C 1.38229 * 120.00874 * 359.88333 * 20 19 18 25 25 C 1.38235 * 120.00026 * 220.79069 * 17 16 14 26 26 C 1.53004 * 117.51557 * 212.61634 * 16 14 13 27 27 C 1.52999 * 60.00009 * 107.48160 * 26 16 14 28 28 C 1.39482 * 120.33515 * 0.25673 * 12 11 10 29 29 C 1.36378 * 120.16825 * 359.43817 * 28 12 11 30 30 H 0.97005 * 119.99684 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.08705 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.91810 * 180.02562 * 11 10 9 33 33 H 0.96996 * 120.00255 * 322.95195 * 13 12 11 34 34 H 1.08000 * 119.99786 * 359.70847 * 18 17 16 35 35 H 1.07997 * 119.99731 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.00983 * 180.11392 * 24 20 19 37 37 H 1.07995 * 119.99889 * 359.97203 * 25 17 16 38 38 H 1.08999 * 117.49902 * 214.97425 * 26 16 14 39 39 H 1.08995 * 117.49782 * 359.97438 * 26 16 14 40 40 H 1.08996 * 117.49636 * 252.50767 * 27 26 16 41 41 H 1.09003 * 117.49566 * 107.48785 * 27 26 16 42 42 H 1.08004 * 119.91598 * 179.72615 * 28 12 11 43 43 H 1.07998 * 120.08888 * 180.25064 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 2.9896 -1.2688 0.4466 9 6 1.4312 -2.3594 -0.5855 10 6 1.9334 -3.6391 -0.2781 11 6 1.3712 -4.7434 -0.8476 12 6 0.3019 -4.6080 -1.7328 13 7 -0.2666 -5.7400 -2.3107 14 6 -1.5980 -5.7972 -2.5126 15 8 -2.2862 -4.8218 -2.2990 16 6 -2.2314 -7.0733 -3.0039 17 6 -2.1892 -8.2324 -2.0417 18 6 -2.4219 -8.0218 -0.6954 19 6 -2.3836 -9.0852 0.1872 20 6 -2.1112 -10.3586 -0.2764 21 7 -2.0708 -11.4972 0.6686 22 8 -1.8331 -12.6197 0.2599 23 8 -2.2752 -11.3117 1.8550 24 6 -1.8793 -10.5693 -1.6227 25 6 -1.9181 -9.5061 -2.5054 26 6 -3.4593 -6.9504 -3.9084 27 6 -2.1170 -7.3897 -4.4965 28 6 -0.1971 -3.3438 -2.0466 29 6 0.3508 -2.2307 -1.4803 30 1 -0.4850 0.8401 0.0004 31 1 2.7622 -3.7455 0.4062 32 1 1.7549 -5.7252 -0.6125 33 1 0.2954 -6.4875 -2.5678 34 1 -2.6293 -7.0260 -0.3326 35 1 -2.5650 -8.9206 1.2390 36 1 -1.6683 -11.5646 -1.9851 37 1 -1.7370 -9.6707 -3.5573 38 1 -4.2367 -7.7078 -3.8074 39 1 -3.8095 -5.9464 -4.1478 40 1 -1.5839 -6.6747 -5.1231 41 1 -2.0112 -8.4363 -4.7824 42 1 -1.0225 -3.2465 -2.7364 43 1 -0.0392 -1.2528 -1.7211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225990011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:03 Heat of formation + Delta-G solvation = 38.732912 kcal Electronic energy + Delta-G solvation = -29432.377466 eV Core-core repulsion = 25218.511383 eV Total energy + Delta-G solvation = -4213.866083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.126 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38024 -40.85606 -39.33181 -37.68921 -36.75478 -36.48662 -34.59459 -33.09285 -32.04672 -31.72655 -29.60474 -29.20762 -27.17298 -25.64291 -24.19663 -23.50467 -22.67634 -22.24983 -21.40598 -20.67769 -19.62820 -19.36942 -18.83188 -17.79005 -17.71432 -17.42943 -16.54458 -16.10420 -15.59801 -15.40210 -15.27771 -14.71822 -14.40467 -14.18066 -14.04719 -13.72388 -13.59773 -13.08870 -12.86540 -12.59294 -12.17043 -12.09704 -11.98071 -11.79166 -11.75641 -11.55323 -11.38646 -11.33029 -11.27451 -11.19563 -11.00374 -10.97991 -10.60546 -10.12322 -9.93933 -9.76477 -9.60649 -9.49910 -9.22161 -8.72726 -7.61843 -7.24855 -6.94057 -4.36632 -0.44848 0.59550 1.05878 1.18074 2.40283 2.78371 2.84510 3.00120 3.01754 3.03662 3.12207 3.36368 3.55922 3.82789 3.93218 4.02438 4.14283 4.38046 4.45963 4.51074 4.57233 4.64277 4.80556 4.92693 5.17498 5.24484 5.31440 5.40974 5.49962 5.58856 5.61989 5.76845 5.82973 5.92089 6.06467 6.21014 6.31774 6.69316 6.88530 6.95361 7.03881 7.19621 7.43422 7.49304 7.56769 7.85262 7.95701 8.09907 8.19737 8.50791 8.61502 8.76737 8.90841 9.97336 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.002342 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.499677 B =11954.376264 C =13132.057905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.081 3.919 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.109 3.891 10 C -0.224 4.224 11 C -0.092 4.092 12 C -0.028 4.028 13 N -0.638 5.638 14 C 0.535 3.465 15 O -0.518 6.518 16 C -0.136 4.136 17 C 0.017 3.983 18 C -0.101 4.101 19 C -0.046 4.046 20 C -0.050 4.050 21 N 0.030 4.970 22 O -0.165 6.165 23 O -0.161 6.161 24 C -0.051 4.051 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.156 4.156 28 C -0.076 4.076 29 C -0.174 4.174 30 H 0.285 0.715 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.394 0.606 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -15.623 -8.024 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.244 4.244 11 C -0.112 4.112 12 C -0.120 4.120 13 N -0.280 5.280 14 C 0.319 3.681 15 O -0.394 6.394 16 C -0.139 4.139 17 C 0.016 3.984 18 C -0.120 4.120 19 C -0.065 4.065 20 C -0.133 4.133 21 N 0.549 4.451 22 O -0.380 6.380 23 O -0.377 6.377 24 C -0.070 4.070 25 C -0.136 4.136 26 C -0.163 4.163 27 C -0.192 4.192 28 C -0.096 4.096 29 C -0.194 4.194 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.796 -14.233 -8.270 17.452 hybrid contribution 0.648 0.037 0.338 0.731 sum -5.149 -14.196 -7.932 17.057 Atomic orbital electron populations 1.69928 1.07980 1.29917 1.31131 1.26011 0.94516 1.01738 0.91833 0.86375 0.80825 0.80413 0.79603 1.19008 1.20216 1.18374 1.19605 1.03113 0.93029 1.32681 0.90026 1.17646 0.90455 0.91790 0.89489 1.20457 1.05252 0.92247 1.06442 1.20034 0.97203 0.97151 0.96835 1.17064 1.02985 0.85114 1.06855 1.42824 1.06235 1.18782 1.60151 1.19063 0.82499 0.87289 0.79220 1.90738 1.62206 1.35991 1.50417 1.20322 1.07113 0.94184 0.92328 1.19272 0.93026 0.92781 0.93320 1.21183 0.99009 0.99785 0.92004 1.21082 0.93754 0.89317 1.02366 1.21146 1.15017 0.86942 0.90215 1.43631 0.97493 1.02226 1.01730 1.94525 1.51643 1.09195 1.82616 1.94557 1.52443 1.91138 0.99517 1.20993 0.94713 1.01462 0.89868 1.21096 1.01084 0.90687 1.00751 1.23092 0.90482 1.04477 0.98283 1.23242 1.00984 1.03338 0.91680 1.20459 0.98585 0.91178 0.99375 1.20915 1.00576 0.97340 1.00568 0.90439 0.88685 0.89417 0.77308 0.83192 0.82633 0.82791 0.83186 0.87634 0.86778 0.87261 0.87349 0.87885 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.41 11.20 55.55 0.62 -18.79 16 2 C 0.08 1.97 4.94 -17.34 -0.09 1.88 16 3 Si 0.90 17.94 29.64 -169.99 -5.04 12.91 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.74 8.99 -37.85 -0.34 -12.08 16 8 H 0.08 2.01 7.99 -52.48 -0.42 1.59 16 9 C 0.11 2.83 5.62 -106.80 -0.60 2.23 16 10 C -0.22 -5.28 9.74 -39.26 -0.38 -5.67 16 11 C -0.09 -1.96 9.90 -39.79 -0.39 -2.35 16 12 C -0.03 -0.60 6.28 -83.57 -0.52 -1.13 16 13 N -0.64 -10.40 5.30 -9.74 -0.05 -10.45 16 14 C 0.53 8.46 6.12 -10.98 -0.07 8.39 16 15 O -0.52 -10.54 14.23 5.56 0.08 -10.46 16 16 C -0.14 -1.44 2.30 -156.81 -0.36 -1.80 16 17 C 0.02 0.16 5.39 -104.62 -0.56 -0.40 16 18 C -0.10 -1.10 9.34 -39.58 -0.37 -1.47 16 19 C -0.05 -0.48 9.56 -39.58 -0.38 -0.86 16 20 C -0.05 -0.54 6.85 -79.95 -0.55 -1.08 16 21 N 0.03 0.39 4.45 33.96 0.15 0.54 16 22 O -0.16 -2.14 18.45 -29.46 -0.54 -2.68 16 23 O -0.16 -2.21 18.45 -29.46 -0.54 -2.76 16 24 C -0.05 -0.42 9.56 -39.58 -0.38 -0.80 16 25 C -0.12 -0.86 9.38 -39.58 -0.37 -1.23 16 26 C -0.13 -1.13 9.76 -26.73 -0.26 -1.39 16 27 C -0.16 -1.16 9.56 -26.73 -0.26 -1.42 16 28 C -0.08 -1.82 8.61 -39.79 -0.34 -2.16 16 29 C -0.17 -4.51 8.73 -39.26 -0.34 -4.85 16 30 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 31 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.39 5.12 8.83 -40.82 -0.36 4.76 16 34 H 0.15 1.84 7.67 -52.49 -0.40 1.44 16 35 H 0.16 1.50 7.61 -52.49 -0.40 1.10 16 36 H 0.15 1.00 7.61 -52.49 -0.40 0.60 16 37 H 0.15 0.66 5.98 -52.49 -0.31 0.35 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.18 8.02 -51.93 -0.42 0.76 16 40 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.11 0.50 6.13 -51.93 -0.32 0.19 16 42 H 0.10 2.45 6.32 -52.48 -0.33 2.12 16 43 H 0.12 3.11 6.07 -52.49 -0.32 2.79 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -30.48 376.59 -10.72 -41.20 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.51 Total: 11.01 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -6.57 Total: -26.19 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.72 Total: -28.70 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.01 Total: -15.90 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.04 Total: 12.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.48 -10.72 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225990011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.933 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds