Wall clock time and date at job start Tue Mar 31 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86796 * 120.00350 * 2 1 4 4 H 1.48503 * 109.47202 * 270.00138 * 3 2 1 5 5 H 1.48494 * 109.47202 * 30.00094 * 3 2 1 6 6 H 1.48504 * 109.47282 * 150.00259 * 3 2 1 7 7 C 1.39907 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99984 * 208.56029 * 7 2 1 9 9 C 1.41154 * 119.99901 * 28.56245 * 7 2 1 10 10 C 1.40870 * 120.16453 * 197.60777 * 9 7 2 11 11 C 1.36373 * 119.83207 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16496 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83328 * 179.97438 * 12 11 10 14 14 C 1.34786 * 119.99900 * 142.94471 * 13 12 11 15 15 O 1.21272 * 119.99793 * 6.35258 * 14 13 12 16 16 C 1.50697 * 119.99600 * 186.35064 * 14 13 12 17 17 C 1.50698 * 115.55284 * 66.91586 * 16 14 13 18 18 C 1.38237 * 119.99885 * 40.80840 * 17 16 14 19 19 C 1.38242 * 119.99875 * 179.97438 * 18 17 16 20 20 C 1.38227 * 119.99708 * 0.07492 * 19 18 17 21 21 N 1.48022 * 119.99492 * 180.02562 * 20 19 18 22 22 O 1.21803 * 119.99868 * 179.87055 * 21 20 19 23 23 O 1.21799 * 120.00426 * 359.86079 * 21 20 19 24 24 C 1.38229 * 120.00874 * 359.88333 * 20 19 18 25 25 C 1.38235 * 120.00026 * 220.79069 * 17 16 14 26 26 C 1.53004 * 117.51557 * 212.61634 * 16 14 13 27 27 C 1.52999 * 60.00009 * 107.48160 * 26 16 14 28 28 C 1.39482 * 120.33515 * 0.25673 * 12 11 10 29 29 C 1.36378 * 120.16825 * 359.43817 * 28 12 11 30 30 H 0.97005 * 119.99684 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.08705 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.91810 * 180.02562 * 11 10 9 33 33 H 0.96996 * 120.00255 * 322.95195 * 13 12 11 34 34 H 1.08000 * 119.99786 * 359.70847 * 18 17 16 35 35 H 1.07997 * 119.99731 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.00983 * 180.11392 * 24 20 19 37 37 H 1.07995 * 119.99889 * 359.97203 * 25 17 16 38 38 H 1.08999 * 117.49902 * 214.97425 * 26 16 14 39 39 H 1.08995 * 117.49782 * 359.97438 * 26 16 14 40 40 H 1.08996 * 117.49636 * 252.50767 * 27 26 16 41 41 H 1.09003 * 117.49566 * 107.48785 * 27 26 16 42 42 H 1.08004 * 119.91598 * 179.72615 * 28 12 11 43 43 H 1.07998 * 120.08888 * 180.25064 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 2.9896 -1.2688 0.4466 9 6 1.4312 -2.3594 -0.5855 10 6 1.9334 -3.6391 -0.2781 11 6 1.3712 -4.7434 -0.8476 12 6 0.3019 -4.6080 -1.7328 13 7 -0.2666 -5.7400 -2.3107 14 6 -1.5980 -5.7972 -2.5126 15 8 -2.2862 -4.8218 -2.2990 16 6 -2.2314 -7.0733 -3.0039 17 6 -2.1892 -8.2324 -2.0417 18 6 -2.4219 -8.0218 -0.6954 19 6 -2.3836 -9.0852 0.1872 20 6 -2.1112 -10.3586 -0.2764 21 7 -2.0708 -11.4972 0.6686 22 8 -1.8331 -12.6197 0.2599 23 8 -2.2752 -11.3117 1.8550 24 6 -1.8793 -10.5693 -1.6227 25 6 -1.9181 -9.5061 -2.5054 26 6 -3.4593 -6.9504 -3.9084 27 6 -2.1170 -7.3897 -4.4965 28 6 -0.1971 -3.3438 -2.0466 29 6 0.3508 -2.2307 -1.4803 30 1 -0.4850 0.8401 0.0004 31 1 2.7622 -3.7455 0.4062 32 1 1.7549 -5.7252 -0.6125 33 1 0.2954 -6.4875 -2.5678 34 1 -2.6293 -7.0260 -0.3326 35 1 -2.5650 -8.9206 1.2390 36 1 -1.6683 -11.5646 -1.9851 37 1 -1.7370 -9.6707 -3.5573 38 1 -4.2367 -7.7078 -3.8074 39 1 -3.8095 -5.9464 -4.1478 40 1 -1.5839 -6.6747 -5.1231 41 1 -2.0112 -8.4363 -4.7824 42 1 -1.0225 -3.2465 -2.7364 43 1 -0.0392 -1.2528 -1.7211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225990011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:02 Heat of formation + Delta-G solvation = 23.424936 kcal Electronic energy + Delta-G solvation = -29433.041270 eV Core-core repulsion = 25218.511383 eV Total energy + Delta-G solvation = -4214.529887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.29770 -41.88974 -40.48626 -39.19810 -37.71942 -37.57040 -36.25662 -34.79417 -32.83157 -32.44403 -31.46851 -30.98162 -28.12187 -27.18356 -25.31560 -24.34008 -23.62911 -23.20236 -23.05794 -22.22136 -20.68015 -20.43040 -19.76881 -19.32795 -18.86589 -18.64264 -17.99204 -17.22704 -16.93010 -16.41229 -16.14270 -15.87877 -15.80708 -15.59921 -15.03464 -14.86781 -14.58900 -14.40718 -14.36098 -14.00804 -13.81657 -13.49161 -13.33993 -12.85333 -12.82557 -12.75560 -12.67780 -12.46968 -12.34131 -12.33763 -12.28953 -11.99720 -11.80661 -11.78101 -11.64812 -11.22644 -10.79744 -10.49635 -10.45898 -10.28116 -9.49705 -9.05173 -8.75032 -6.27949 -1.32515 -0.10304 0.18426 0.32669 0.77452 1.11152 1.34365 1.39673 1.50070 1.64502 2.08542 2.14844 2.18554 2.64002 2.70455 3.15285 3.31369 3.43228 3.62264 3.64867 3.72267 3.78532 3.88828 4.03552 4.20884 4.37879 4.43774 4.49876 4.57726 4.63233 4.74326 4.82100 4.92147 4.94918 5.05610 5.08061 5.11197 5.15568 5.17339 5.24556 5.39396 5.40733 5.62624 5.83165 6.05074 6.05715 6.28834 6.43771 6.61482 6.67280 6.86469 6.96324 7.33899 8.18732 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.002342 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.499677 B =11954.376264 C =13132.057905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.040 3.960 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.494 4.494 8 H 0.083 0.917 9 C 0.078 3.922 10 C -0.235 4.235 11 C -0.089 4.089 12 C -0.010 4.010 13 N -0.632 5.632 14 C 0.535 3.465 15 O -0.570 6.570 16 C -0.149 4.149 17 C 0.021 3.979 18 C -0.118 4.118 19 C -0.052 4.052 20 C -0.063 4.063 21 N 0.031 4.969 22 O -0.154 6.154 23 O -0.206 6.206 24 C -0.038 4.038 25 C -0.094 4.094 26 C -0.130 4.130 27 C -0.122 4.122 28 C -0.089 4.089 29 C -0.200 4.200 30 H 0.291 0.709 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.415 0.585 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.181 0.819 37 H 0.196 0.804 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.154 0.846 42 H 0.096 0.904 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -18.557 -10.564 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.521 4.521 8 H 0.101 0.899 9 C 0.075 3.925 10 C -0.255 4.255 11 C -0.109 4.109 12 C -0.103 4.103 13 N -0.276 5.276 14 C 0.323 3.677 15 O -0.449 6.449 16 C -0.153 4.153 17 C 0.021 3.979 18 C -0.137 4.137 19 C -0.071 4.071 20 C -0.146 4.146 21 N 0.546 4.454 22 O -0.374 6.374 23 O -0.412 6.412 24 C -0.057 4.057 25 C -0.112 4.112 26 C -0.167 4.167 27 C -0.158 4.158 28 C -0.109 4.109 29 C -0.220 4.220 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.252 0.748 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.199 0.801 37 H 0.213 0.787 38 H 0.149 0.851 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.172 0.828 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.027 -17.183 -10.749 20.882 hybrid contribution 0.313 0.785 0.995 1.306 sum -4.714 -16.397 -9.754 19.653 Atomic orbital electron populations 1.69976 1.09624 1.31201 1.32277 1.26902 0.95152 1.05072 0.90736 0.85236 0.79443 0.75610 0.79688 1.18642 1.19226 1.17610 1.19847 1.03570 0.94296 1.34427 0.89920 1.17971 0.91081 0.93241 0.90184 1.20714 1.05729 0.92178 1.06859 1.20359 0.96575 0.98255 0.95734 1.17114 1.01964 0.85759 1.05467 1.42749 1.07031 1.17898 1.59942 1.19960 0.81809 0.88587 0.77349 1.90723 1.63238 1.38719 1.52193 1.20044 1.08859 0.91828 0.94523 1.19236 0.93020 0.93561 0.92117 1.21015 1.00735 0.98708 0.93229 1.21002 0.94238 0.89579 1.02278 1.21310 1.16479 0.85953 0.90859 1.43922 0.96942 1.02653 1.01845 1.94487 1.50610 1.09907 1.82439 1.94568 1.54715 1.91395 1.00537 1.21389 0.92801 1.03042 0.88432 1.21445 0.98597 0.88631 1.02511 1.23217 0.91539 1.04360 0.97621 1.23507 0.98522 1.05834 0.87981 1.20516 0.98570 0.92206 0.99583 1.20840 1.01821 0.97164 1.02160 0.89781 0.87570 0.85484 0.74807 0.85762 0.83211 0.80126 0.78745 0.85067 0.89043 0.87526 0.82809 0.88630 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.01 11.20 21.82 0.24 -42.76 16 2 C 0.04 1.99 4.94 85.24 0.42 2.42 16 3 Si 0.98 37.75 29.64 68.60 2.03 39.79 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 7 C -0.49 -26.49 8.99 23.39 0.21 -26.28 16 8 H 0.08 4.23 7.99 -2.91 -0.02 4.21 16 9 C 0.08 4.23 5.62 -21.27 -0.12 4.11 16 10 C -0.23 -11.22 9.74 22.48 0.22 -11.00 16 11 C -0.09 -3.70 9.90 22.13 0.22 -3.49 16 12 C -0.01 -0.42 6.28 38.57 0.24 -0.18 16 13 N -0.63 -19.65 5.30 -303.11 -1.61 -21.25 16 14 C 0.54 16.54 6.12 87.65 0.54 17.07 16 15 O -0.57 -23.95 14.23 -3.01 -0.04 -23.99 16 16 C -0.15 -2.73 2.30 -53.67 -0.12 -2.85 16 17 C 0.02 0.34 5.39 -19.87 -0.11 0.23 16 18 C -0.12 -2.48 9.34 22.27 0.21 -2.27 16 19 C -0.05 -1.06 9.56 22.27 0.21 -0.85 16 20 C -0.06 -1.21 6.85 36.37 0.25 -0.96 16 21 N 0.03 0.76 4.45 -46.47 -0.21 0.56 16 22 O -0.15 -3.66 18.45 18.88 0.35 -3.31 16 23 O -0.21 -5.78 18.45 18.89 0.35 -5.43 16 24 C -0.04 -0.44 9.56 22.27 0.21 -0.23 16 25 C -0.09 -0.82 9.38 22.27 0.21 -0.61 16 26 C -0.13 -1.92 9.76 30.60 0.30 -1.63 16 27 C -0.12 -1.19 9.56 30.59 0.29 -0.90 16 28 C -0.09 -4.41 8.61 22.14 0.19 -4.22 16 29 C -0.20 -10.97 8.73 22.48 0.20 -10.77 16 30 H 0.29 13.97 8.30 -92.70 -0.77 13.20 16 31 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.42 9.43 8.83 -92.71 -0.82 8.61 16 34 H 0.12 3.22 7.67 -2.91 -0.02 3.20 16 35 H 0.15 3.09 7.61 -2.91 -0.02 3.07 16 36 H 0.18 1.25 7.61 -2.91 -0.02 1.22 16 37 H 0.20 0.01 5.98 -2.91 -0.02 -0.01 16 38 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.81 8.02 -2.39 -0.02 1.79 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.15 0.15 6.13 -2.39 -0.01 0.14 16 42 H 0.10 4.81 6.32 -2.91 -0.02 4.80 16 43 H 0.09 5.48 6.07 -2.91 -0.02 5.46 16 Total: -1.00 -73.56 376.59 4.96 -68.60 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.27 Total: 30.20 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 3.57 Total: -42.39 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -1.57 Total: -63.46 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: 0.65 Total: -32.73 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.79 kcal Total: -73.56 4.96 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225990011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.028 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds