Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32566 * 120.00071 * 2 1 4 4 C 1.47815 * 119.99910 * 7.65045 * 3 2 1 5 5 C 1.39533 * 120.14084 * 213.20185 * 4 3 2 6 6 C 1.37976 * 119.85587 * 179.72300 * 5 4 3 7 7 C 1.38341 * 120.13729 * 0.53064 * 6 5 4 8 8 C 1.38340 * 120.29138 * 359.76354 * 7 6 5 9 9 C 1.37972 * 120.13814 * 359.95943 * 8 7 6 10 10 C 1.50699 * 119.99762 * 179.97438 * 2 1 3 11 11 N 1.46495 * 109.47455 * 275.00304 * 10 2 1 12 12 C 1.46499 * 120.00200 * 275.00299 * 11 10 2 13 13 S 1.65603 * 119.99995 * 95.00212 * 11 10 2 14 14 O 1.42098 * 106.40157 * 336.45920 * 13 11 10 15 15 O 1.42101 * 106.40210 * 203.54390 * 13 11 10 16 16 N 1.65594 * 107.21862 * 90.00017 * 13 11 10 17 17 C 1.46507 * 120.00033 * 90.00162 * 16 13 11 18 18 C 1.46493 * 120.00173 * 269.72844 * 16 13 11 19 19 H 1.08999 * 109.47117 * 359.97438 * 18 16 13 20 20 C 1.53001 * 109.47649 * 119.99954 * 18 16 13 21 21 C 1.50703 * 109.47071 * 239.99949 * 18 16 13 22 22 H 1.08000 * 120.00473 * 359.97438 * 21 18 16 23 23 C 1.37875 * 120.00097 * 179.97438 * 21 18 16 24 24 N 1.31514 * 120.00331 * 179.97438 * 23 21 18 25 25 Si 1.86803 * 120.00023 * 0.02562 * 23 21 18 26 26 H 1.48501 * 109.47219 * 89.99896 * 25 23 21 27 27 H 1.48503 * 109.47166 * 209.99713 * 25 23 21 28 28 H 1.48494 * 109.46963 * 330.00010 * 25 23 21 29 29 H 1.08994 * 109.47702 * 266.53749 * 1 2 3 30 30 H 1.09005 * 109.47082 * 26.54037 * 1 2 3 31 31 H 1.09005 * 109.47117 * 146.53771 * 1 2 3 32 32 H 1.08004 * 120.00034 * 187.65513 * 3 2 1 33 33 H 1.08001 * 120.07218 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.92522 * 180.27444 * 6 5 4 35 35 H 1.08008 * 119.85254 * 179.74577 * 7 6 5 36 36 H 1.08001 * 119.92921 * 179.97438 * 8 7 6 37 37 H 1.08008 * 120.07162 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47045 * 155.00648 * 10 2 1 39 39 H 1.09002 * 109.47422 * 35.00635 * 10 2 1 40 40 H 1.08996 * 109.47162 * 269.99887 * 12 11 10 41 41 H 1.09004 * 109.47438 * 29.99897 * 12 11 10 42 42 H 1.09001 * 109.47328 * 149.99731 * 12 11 10 43 43 H 1.08999 * 109.47146 * 89.99704 * 17 16 13 44 44 H 1.08996 * 109.47092 * 210.00261 * 17 16 13 45 45 H 1.09002 * 109.46504 * 329.99850 * 17 16 13 46 46 H 1.08996 * 109.47207 * 179.97438 * 20 18 16 47 47 H 1.08999 * 109.46697 * 300.00013 * 20 18 16 48 48 H 1.08999 * 109.46846 * 59.99827 * 20 18 16 49 49 H 0.96994 * 120.00633 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 1.4406 2.4225 0.1704 5 6 1.8893 3.5776 -0.4709 6 6 1.2008 4.7628 -0.3123 7 6 0.0743 4.8097 0.4893 8 6 -0.3723 3.6694 1.1328 9 6 0.3039 2.4768 0.9778 10 6 2.2604 -1.3051 0.0006 11 7 2.4003 -1.7877 1.3767 12 6 3.5057 -1.3107 2.2114 13 16 1.3088 -2.8724 1.9887 14 8 0.1208 -2.7210 1.2239 15 8 1.3474 -2.7265 3.4017 16 7 1.8871 -4.3887 1.6591 17 6 2.7656 -5.0622 2.6188 18 6 1.5156 -5.0590 0.4107 19 1 0.8581 -4.4104 -0.1682 20 6 2.7769 -5.3623 -0.4005 21 6 0.7993 -6.3469 0.7259 22 1 0.6375 -6.6373 1.7535 23 6 0.3506 -7.1546 -0.2974 24 7 -0.2740 -8.2788 -0.0224 25 14 0.6311 -6.6528 -2.0748 26 1 1.9288 -7.2005 -2.5450 27 1 -0.4671 -7.1877 -2.9194 28 1 0.6544 -5.1713 -2.1730 29 1 -0.3634 -0.0621 1.0257 30 1 -0.3633 0.9194 -0.4592 31 1 -0.3633 -0.8574 -0.5667 32 1 3.2426 1.1522 -0.1246 33 1 2.7713 3.5432 -1.0933 34 1 1.5446 5.6566 -0.8117 35 1 -0.4587 5.7409 0.6135 36 1 -1.2522 3.7128 1.7575 37 1 -0.0459 1.5870 1.4804 38 1 3.2487 -1.1543 -0.4337 39 1 1.7131 -2.0409 -0.5886 40 1 4.3655 -1.9690 2.0866 41 1 3.7767 -0.2983 1.9119 42 1 3.1974 -1.3100 3.2569 43 1 2.1632 -5.6423 3.3178 44 1 3.4444 -5.7274 2.0852 45 1 3.3428 -4.3179 3.1674 46 1 2.5004 -5.8614 -1.3291 47 1 3.2949 -4.4307 -0.6285 48 1 3.4340 -6.0111 0.1786 49 1 -0.5900 -8.8468 -0.7423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252503970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = -16.181221 kcal Electronic energy + Delta-G solvation = -30297.710990 eV Core-core repulsion = 26352.740697 eV Total energy + Delta-G solvation = -3944.970293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.59161 -37.34591 -36.82298 -36.42760 -35.32352 -34.51463 -32.51721 -31.29947 -30.63233 -30.05951 -27.66962 -27.21743 -25.82545 -25.06632 -24.54720 -22.55689 -21.94653 -20.85683 -19.04410 -18.26613 -17.37977 -17.24179 -16.69216 -16.41868 -16.06297 -15.58668 -15.38733 -15.15136 -14.59684 -14.35753 -13.86940 -13.79455 -13.66272 -13.57078 -13.32132 -13.04023 -12.79467 -12.72228 -12.53558 -12.33447 -12.23559 -12.13369 -11.94079 -11.79262 -11.77423 -11.52543 -11.32226 -11.25657 -11.18245 -11.14138 -11.06200 -10.97557 -10.49271 -10.18434 -9.81555 -9.63678 -9.42928 -9.09444 -9.02587 -8.65227 -8.27375 -8.11710 -6.14435 -4.15155 0.76147 1.06289 1.24367 2.23263 3.19723 3.30347 3.34096 3.36406 3.70317 3.94090 4.32222 4.52842 4.67703 4.72769 4.78745 4.80126 4.92171 5.02909 5.10365 5.14962 5.25360 5.38814 5.39897 5.44433 5.48900 5.62887 5.71710 5.75757 5.79134 5.81772 5.93779 5.96878 5.99612 6.13487 6.15689 6.21656 6.24464 6.28214 6.30640 6.34440 6.44359 6.49599 6.54963 6.60802 6.77000 6.78930 6.86336 7.26009 7.36828 7.60877 8.45125 8.89996 9.45153 10.98641 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.003049 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.419894 B = 9181.353267 C = 9795.429203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C -0.127 4.127 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.160 3.840 11 N -1.008 6.008 12 C 0.087 3.913 13 S 2.776 3.224 14 O -0.965 6.965 15 O -0.988 6.988 16 N -0.984 5.984 17 C 0.109 3.891 18 C 0.240 3.760 19 H 0.057 0.943 20 C -0.163 4.163 21 C -0.522 4.522 22 H 0.082 0.918 23 C 0.074 3.926 24 N -0.894 5.894 25 Si 0.882 3.118 26 H -0.277 1.277 27 H -0.293 1.293 28 H -0.264 1.264 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.032 0.968 48 H 0.059 0.941 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 22.105 -0.463 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.116 4.116 3 C -0.146 4.146 4 C -0.048 4.048 5 C -0.130 4.130 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.140 4.140 9 C -0.131 4.131 10 C 0.034 3.966 11 N -0.846 5.846 12 C -0.059 4.059 13 S 2.786 3.214 14 O -0.949 6.949 15 O -0.972 6.972 16 N -0.826 5.826 17 C -0.037 4.037 18 C 0.135 3.865 19 H 0.074 0.926 20 C -0.222 4.222 21 C -0.561 4.561 22 H 0.100 0.900 23 C -0.129 4.129 24 N -0.532 5.532 25 Si 0.712 3.288 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.189 1.189 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.363 22.138 -0.056 23.331 hybrid contribution 0.583 -0.012 -1.216 1.349 sum 7.946 22.126 -1.273 23.544 Atomic orbital electron populations 1.21199 0.91481 1.02985 1.02558 1.22594 0.96754 0.94783 0.97432 1.21472 0.98693 0.90594 1.03868 1.19050 0.95219 0.93407 0.97133 1.21263 1.00037 0.92255 0.99463 1.21058 0.96052 0.97793 0.99315 1.21188 0.96961 0.98335 0.97750 1.21132 1.00140 0.92785 0.99979 1.21725 0.94866 0.98438 0.98068 1.20149 1.00206 0.93557 0.82656 1.58166 1.44917 1.59950 1.21544 1.21502 0.89027 1.00186 0.95196 1.02169 0.73648 0.72526 0.73097 1.93596 1.43274 1.85811 1.72184 1.93538 1.87000 1.86473 1.30211 1.57516 1.63719 1.31627 1.29732 1.21188 0.93543 0.97306 0.91665 1.19079 0.92317 0.94944 0.80152 0.92586 1.22503 1.00005 0.99586 1.00103 1.21153 1.36284 1.02952 0.95759 0.90040 1.24909 0.94504 0.94638 0.98839 1.69869 1.38389 1.12124 1.32776 0.86955 0.77024 0.79486 0.85371 1.20409 1.22068 1.18915 0.91172 0.91389 0.90313 0.86248 0.86062 0.86236 0.86341 0.86020 0.85000 0.89886 0.89040 0.92886 0.91152 0.90269 0.92766 0.90917 0.93146 0.93239 0.94900 0.92153 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 7.08 36.00 0.26 -1.43 16 2 C -0.11 -1.40 5.57 -101.26 -0.56 -1.96 16 3 C -0.13 -1.35 9.36 -37.57 -0.35 -1.71 16 4 C -0.05 -0.52 5.21 -105.02 -0.55 -1.07 16 5 C -0.11 -1.07 9.79 -39.19 -0.38 -1.45 16 6 C -0.12 -1.09 10.03 -39.64 -0.40 -1.48 16 7 C -0.12 -1.10 10.04 -39.51 -0.40 -1.50 16 8 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 9 C -0.11 -1.26 7.59 -39.20 -0.30 -1.56 16 10 C 0.16 2.02 5.49 -5.20 -0.03 1.99 16 11 N -1.01 -14.07 3.23 -123.06 -0.40 -14.47 16 12 C 0.09 0.95 10.68 59.85 0.64 1.59 16 13 S 2.78 51.69 6.01 -107.50 -0.65 51.05 16 14 O -0.96 -20.35 14.30 -57.17 -0.82 -21.17 16 15 O -0.99 -19.91 15.81 -57.17 -0.90 -20.81 16 16 N -0.98 -19.41 3.12 -115.85 -0.36 -19.78 16 17 C 0.11 1.88 9.52 59.85 0.57 2.45 16 18 C 0.24 5.41 2.22 -69.08 -0.15 5.25 16 19 H 0.06 1.32 5.96 -51.93 -0.31 1.01 16 20 C -0.16 -3.22 8.66 37.16 0.32 -2.90 16 21 C -0.52 -14.22 8.95 -34.44 -0.31 -14.53 16 22 H 0.08 2.42 7.88 -52.49 -0.41 2.01 16 23 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 24 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 25 Si 0.88 21.05 24.37 -169.99 -4.14 16.91 16 26 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 29 H 0.07 0.98 6.84 -51.93 -0.36 0.63 16 30 H 0.07 0.82 5.99 -51.93 -0.31 0.51 16 31 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 32 H 0.12 1.05 7.99 -52.48 -0.42 0.63 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.51 5.31 -52.48 -0.28 1.23 16 38 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 39 H 0.09 1.28 7.59 -51.93 -0.39 0.89 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 42 H 0.08 0.93 7.02 -51.93 -0.36 0.57 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.18 6.44 -51.93 -0.33 0.85 16 45 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 46 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 1.14 6.67 -51.93 -0.35 0.79 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 394.54 15.07 5.95 5.95 Total: -1.00 -32.94 394.54 -10.17 -43.11 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.48 Total: 3.11 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.14 Total: -17.92 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.02 Total: -60.21 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.72 Total: -41.98 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.14 Total: 16.91 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.65 Total: 51.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.94 -10.17 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252503970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.926 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds