Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32566 * 120.00071 * 2 1 4 4 C 1.47815 * 119.99910 * 7.65045 * 3 2 1 5 5 C 1.39533 * 120.14084 * 213.20185 * 4 3 2 6 6 C 1.37976 * 119.85587 * 179.72300 * 5 4 3 7 7 C 1.38341 * 120.13729 * 0.53064 * 6 5 4 8 8 C 1.38340 * 120.29138 * 359.76354 * 7 6 5 9 9 C 1.37972 * 120.13814 * 359.95943 * 8 7 6 10 10 C 1.50699 * 119.99762 * 179.97438 * 2 1 3 11 11 N 1.46495 * 109.47455 * 275.00304 * 10 2 1 12 12 C 1.46499 * 120.00200 * 275.00299 * 11 10 2 13 13 S 1.65603 * 119.99995 * 95.00212 * 11 10 2 14 14 O 1.42098 * 106.40157 * 336.45920 * 13 11 10 15 15 O 1.42101 * 106.40210 * 203.54390 * 13 11 10 16 16 N 1.65594 * 107.21862 * 90.00017 * 13 11 10 17 17 C 1.46507 * 120.00033 * 90.00162 * 16 13 11 18 18 C 1.46493 * 120.00173 * 269.72844 * 16 13 11 19 19 H 1.08999 * 109.47117 * 359.97438 * 18 16 13 20 20 C 1.53001 * 109.47649 * 119.99954 * 18 16 13 21 21 C 1.50703 * 109.47071 * 239.99949 * 18 16 13 22 22 H 1.08000 * 120.00473 * 359.97438 * 21 18 16 23 23 C 1.37875 * 120.00097 * 179.97438 * 21 18 16 24 24 N 1.31514 * 120.00331 * 179.97438 * 23 21 18 25 25 Si 1.86803 * 120.00023 * 0.02562 * 23 21 18 26 26 H 1.48501 * 109.47219 * 89.99896 * 25 23 21 27 27 H 1.48503 * 109.47166 * 209.99713 * 25 23 21 28 28 H 1.48494 * 109.46963 * 330.00010 * 25 23 21 29 29 H 1.08994 * 109.47702 * 266.53749 * 1 2 3 30 30 H 1.09005 * 109.47082 * 26.54037 * 1 2 3 31 31 H 1.09005 * 109.47117 * 146.53771 * 1 2 3 32 32 H 1.08004 * 120.00034 * 187.65513 * 3 2 1 33 33 H 1.08001 * 120.07218 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.92522 * 180.27444 * 6 5 4 35 35 H 1.08008 * 119.85254 * 179.74577 * 7 6 5 36 36 H 1.08001 * 119.92921 * 179.97438 * 8 7 6 37 37 H 1.08008 * 120.07162 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.47045 * 155.00648 * 10 2 1 39 39 H 1.09002 * 109.47422 * 35.00635 * 10 2 1 40 40 H 1.08996 * 109.47162 * 269.99887 * 12 11 10 41 41 H 1.09004 * 109.47438 * 29.99897 * 12 11 10 42 42 H 1.09001 * 109.47328 * 149.99731 * 12 11 10 43 43 H 1.08999 * 109.47146 * 89.99704 * 17 16 13 44 44 H 1.08996 * 109.47092 * 210.00261 * 17 16 13 45 45 H 1.09002 * 109.46504 * 329.99850 * 17 16 13 46 46 H 1.08996 * 109.47207 * 179.97438 * 20 18 16 47 47 H 1.08999 * 109.46697 * 300.00013 * 20 18 16 48 48 H 1.08999 * 109.46846 * 59.99827 * 20 18 16 49 49 H 0.96994 * 120.00633 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 1.4406 2.4225 0.1704 5 6 1.8893 3.5776 -0.4709 6 6 1.2008 4.7628 -0.3123 7 6 0.0743 4.8097 0.4893 8 6 -0.3723 3.6694 1.1328 9 6 0.3039 2.4768 0.9778 10 6 2.2604 -1.3051 0.0006 11 7 2.4003 -1.7877 1.3767 12 6 3.5057 -1.3107 2.2114 13 16 1.3088 -2.8724 1.9887 14 8 0.1208 -2.7210 1.2239 15 8 1.3474 -2.7265 3.4017 16 7 1.8871 -4.3887 1.6591 17 6 2.7656 -5.0622 2.6188 18 6 1.5156 -5.0590 0.4107 19 1 0.8581 -4.4104 -0.1682 20 6 2.7769 -5.3623 -0.4005 21 6 0.7993 -6.3469 0.7259 22 1 0.6375 -6.6373 1.7535 23 6 0.3506 -7.1546 -0.2974 24 7 -0.2740 -8.2788 -0.0224 25 14 0.6311 -6.6528 -2.0748 26 1 1.9288 -7.2005 -2.5450 27 1 -0.4671 -7.1877 -2.9194 28 1 0.6544 -5.1713 -2.1730 29 1 -0.3634 -0.0621 1.0257 30 1 -0.3633 0.9194 -0.4592 31 1 -0.3633 -0.8574 -0.5667 32 1 3.2426 1.1522 -0.1246 33 1 2.7713 3.5432 -1.0933 34 1 1.5446 5.6566 -0.8117 35 1 -0.4587 5.7409 0.6135 36 1 -1.2522 3.7128 1.7575 37 1 -0.0459 1.5870 1.4804 38 1 3.2487 -1.1543 -0.4337 39 1 1.7131 -2.0409 -0.5886 40 1 4.3655 -1.9690 2.0866 41 1 3.7767 -0.2983 1.9119 42 1 3.1974 -1.3100 3.2569 43 1 2.1632 -5.6423 3.3178 44 1 3.4444 -5.7274 2.0852 45 1 3.3428 -4.3179 3.1674 46 1 2.5004 -5.8614 -1.3291 47 1 3.2949 -4.4307 -0.6285 48 1 3.4340 -6.0111 0.1786 49 1 -0.5900 -8.8468 -0.7423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252503970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = -37.594008 kcal Electronic energy + Delta-G solvation = -30298.639518 eV Core-core repulsion = 26352.740697 eV Total energy + Delta-G solvation = -3945.898821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.34053 -38.51646 -38.15138 -38.05725 -36.87998 -35.43910 -34.53519 -32.02986 -31.79538 -31.40411 -28.63208 -28.08399 -27.33681 -26.95617 -25.54309 -23.28037 -22.80528 -22.52378 -20.14992 -19.46827 -18.97954 -18.69109 -18.18216 -17.46038 -17.37110 -16.81052 -16.41437 -16.16770 -15.91537 -15.39487 -15.19172 -15.07906 -14.71260 -14.56189 -14.55011 -14.37852 -14.12952 -13.96713 -13.80007 -13.63712 -13.50227 -13.41759 -13.24430 -13.14426 -12.93395 -12.90511 -12.78086 -12.70826 -12.48194 -12.23074 -12.10340 -11.98081 -11.88302 -11.80059 -11.45358 -11.31943 -10.76161 -10.61780 -10.08295 -9.79483 -9.75132 -9.06039 -8.29865 -6.35328 -0.46486 0.08779 0.52696 1.30456 1.39406 1.40120 1.47894 2.04420 2.32226 2.55002 2.97422 3.05011 3.32569 3.70676 3.74912 3.97805 4.04157 4.10523 4.14063 4.20941 4.34443 4.44353 4.47222 4.61205 4.62330 4.63572 4.68012 4.69819 4.73507 4.76117 4.80531 4.81731 4.87330 4.97364 5.03981 5.09492 5.10043 5.13306 5.20757 5.21408 5.43840 5.44162 5.53639 5.59160 5.63385 5.64087 5.72841 5.89140 5.95113 6.14006 6.34067 6.69168 7.29449 8.87169 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.003049 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.419894 B = 9181.353267 C = 9795.429203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.141 4.141 3 C -0.099 4.099 4 C -0.071 4.071 5 C -0.113 4.113 6 C -0.128 4.128 7 C -0.126 4.126 8 C -0.136 4.136 9 C -0.132 4.132 10 C 0.157 3.843 11 N -0.997 5.997 12 C 0.079 3.921 13 S 2.784 3.216 14 O -0.999 6.999 15 O -1.011 7.011 16 N -0.993 5.993 17 C 0.104 3.896 18 C 0.243 3.757 19 H 0.046 0.954 20 C -0.158 4.158 21 C -0.528 4.528 22 H 0.036 0.964 23 C 0.014 3.986 24 N -0.947 5.947 25 Si 0.942 3.058 26 H -0.252 1.252 27 H -0.301 1.301 28 H -0.243 1.243 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.041 0.959 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.593 25.591 -2.413 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C -0.118 4.118 4 C -0.071 4.071 5 C -0.131 4.131 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.154 4.154 9 C -0.150 4.150 10 C 0.032 3.968 11 N -0.838 5.838 12 C -0.066 4.066 13 S 2.795 3.205 14 O -0.983 6.983 15 O -0.995 6.995 16 N -0.834 5.834 17 C -0.042 4.042 18 C 0.137 3.863 19 H 0.064 0.936 20 C -0.216 4.216 21 C -0.567 4.567 22 H 0.054 0.946 23 C -0.184 4.184 24 N -0.587 5.587 25 Si 0.768 3.232 26 H -0.177 1.177 27 H -0.229 1.229 28 H -0.167 1.167 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.734 25.631 -1.977 27.858 hybrid contribution -0.505 -0.914 -0.466 1.144 sum 10.228 24.717 -2.443 26.861 Atomic orbital electron populations 1.21089 0.93275 1.02178 1.01102 1.22427 0.95672 0.95472 1.00748 1.21732 0.99897 0.89695 1.00477 1.19226 0.95547 0.94258 0.98063 1.21555 1.00612 0.91823 0.99067 1.21434 0.95628 0.98597 0.98874 1.21524 0.97093 0.98752 0.96982 1.21349 1.00601 0.92918 1.00561 1.21763 0.95711 0.98549 0.98977 1.20345 1.02100 0.93010 0.81332 1.57755 1.44922 1.58422 1.22657 1.21790 0.88384 1.02300 0.94089 1.01667 0.73691 0.72772 0.72410 1.93549 1.45787 1.86256 1.72675 1.93499 1.87440 1.86799 1.31718 1.57496 1.64186 1.32440 1.29245 1.21338 0.93225 0.98329 0.91268 1.18849 0.93444 0.92279 0.81719 0.93584 1.22369 0.98514 1.01793 0.98937 1.21472 1.36482 1.04981 0.93764 0.94592 1.25824 0.94222 0.94461 1.03927 1.70038 1.40436 1.13875 1.34335 0.85977 0.77706 0.80407 0.79150 1.17697 1.22861 1.16685 0.93026 0.90734 0.92639 0.83352 0.83875 0.83649 0.84152 0.85151 0.86462 0.85869 0.90824 0.90448 0.88362 0.91500 0.95262 0.89807 0.89688 0.94045 0.90672 0.91551 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 7.08 71.24 0.50 -2.80 16 2 C -0.14 -3.23 5.57 -17.60 -0.10 -3.33 16 3 C -0.10 -1.80 9.36 23.65 0.22 -1.58 16 4 C -0.07 -1.39 5.21 -20.12 -0.10 -1.49 16 5 C -0.11 -1.76 9.79 22.52 0.22 -1.54 16 6 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 7 C -0.13 -1.92 10.04 22.32 0.22 -1.70 16 8 C -0.14 -2.54 10.03 22.23 0.22 -2.31 16 9 C -0.13 -2.87 7.59 22.52 0.17 -2.70 16 10 C 0.16 3.53 5.49 85.63 0.47 4.00 16 11 N -1.00 -25.63 3.23 -543.24 -1.75 -27.38 16 12 C 0.08 1.45 10.68 127.77 1.36 2.82 16 13 S 2.78 103.96 6.01 -56.49 -0.34 103.62 16 14 O -1.00 -43.67 14.30 -128.00 -1.83 -45.50 16 15 O -1.01 -41.20 15.81 -128.00 -2.02 -43.22 16 16 N -0.99 -39.00 3.12 -520.44 -1.62 -40.62 16 17 C 0.10 3.55 9.52 127.77 1.22 4.77 16 18 C 0.24 10.88 2.22 44.25 0.10 10.98 16 19 H 0.05 2.17 5.96 -2.39 -0.01 2.16 16 20 C -0.16 -5.77 8.66 71.98 0.62 -5.15 16 21 C -0.53 -29.78 8.95 25.60 0.23 -29.55 16 22 H 0.04 2.28 7.88 -2.91 -0.02 2.26 16 23 C 0.01 0.78 5.45 84.65 0.46 1.24 16 24 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 25 Si 0.94 43.22 24.37 68.60 1.67 44.89 16 26 H -0.25 -10.48 6.87 99.48 0.68 -9.80 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.24 -10.24 6.53 99.48 0.65 -9.59 16 29 H 0.05 1.55 6.84 -2.39 -0.02 1.53 16 30 H 0.07 1.86 5.99 -2.38 -0.01 1.84 16 31 H 0.05 1.72 7.90 -2.38 -0.02 1.71 16 32 H 0.15 1.81 7.99 -2.91 -0.02 1.79 16 33 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 35 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.12 2.81 5.31 -2.91 -0.02 2.80 16 38 H 0.12 1.79 7.95 -2.39 -0.02 1.77 16 39 H 0.07 1.94 7.59 -2.39 -0.02 1.92 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.30 8.01 -2.39 -0.02 1.28 16 42 H 0.07 1.43 7.02 -2.39 -0.02 1.41 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 2.64 6.44 -2.39 -0.02 2.62 16 45 H 0.08 2.27 7.79 -2.39 -0.02 2.25 16 46 H 0.04 1.59 3.27 -2.39 -0.01 1.58 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.07 2.33 6.67 -2.39 -0.02 2.31 16 49 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.42 394.54 1.31 -75.11 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.86 Total: 21.80 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 6.05 Total: -29.93 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -3.08 Total: -126.77 kcal Atomic # 8 Polarization: -84.87 SS G_CDS: -3.85 Total: -88.72 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.67 Total: 44.89 kcal Atomic # 16 Polarization: 103.96 SS G_CDS: -0.34 Total: 103.62 kcal Total: -76.42 1.31 -75.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252503970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.520 kcal (2) G-P(sol) polarization free energy of solvation -76.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds