Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40084 * 125.97411 * 180.18874 * 4 3 2 6 6 C 1.34776 * 120.00422 * 0.29518 * 5 4 3 7 7 O 1.21571 * 119.99276 * 0.02562 * 6 5 4 8 8 C 1.47811 * 120.00428 * 180.02562 * 6 5 4 9 9 C 1.39613 * 120.14456 * 359.72815 * 8 6 5 10 10 C 1.37929 * 119.85021 * 179.69925 * 9 8 6 11 11 C 1.38383 * 120.14706 * 0.59548 * 10 9 8 12 12 C 1.38339 * 120.29379 * 359.68246 * 11 10 9 13 13 C 1.50702 * 119.92858 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.46821 * 270.01883 * 13 12 11 15 15 F 1.39902 * 109.47325 * 30.00931 * 13 12 11 16 16 F 1.39895 * 109.47803 * 150.01569 * 13 12 11 17 17 C 1.37972 * 120.14967 * 0.02562 * 12 11 10 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46503 * 125.97339 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46808 * 90.00128 * 20 19 2 22 22 H 1.07995 * 120.00443 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99491 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00456 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46806 * 60.00219 * 25 23 21 27 27 H 1.48498 * 109.47204 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47109 * 300.00468 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99857 * 180.30236 * 5 4 3 34 34 H 1.08005 * 120.07293 * 359.97438 * 9 8 6 35 35 H 1.08005 * 119.92600 * 180.29510 * 10 9 8 36 36 H 1.07999 * 119.85408 * 179.69428 * 11 10 9 37 37 H 1.07993 * 120.08165 * 180.02562 * 17 12 11 38 38 H 1.08999 * 109.46899 * 210.00130 * 20 19 2 39 39 H 1.08999 * 109.46830 * 329.99997 * 20 19 2 40 40 H 0.96998 * 120.00310 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0084 6 6 4.6363 2.8152 0.0161 7 8 3.5272 3.3130 0.0193 8 6 5.8348 3.6803 0.0207 9 6 7.1099 3.1118 0.0228 10 6 8.2241 3.9248 0.0208 11 6 8.0802 5.3011 0.0291 12 6 6.8196 5.8709 0.0329 13 6 6.6724 7.3707 0.0414 14 9 6.6279 7.8273 1.3631 15 9 7.7632 7.9501 -0.6155 16 9 5.4896 7.7270 -0.6152 17 6 5.6967 5.0692 0.0289 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0129 21 6 1.6945 -2.9551 -1.4362 22 1 1.9102 -2.2832 -2.2537 23 6 1.2769 -4.2435 -1.6946 24 7 1.0138 -5.0616 -0.6992 25 14 1.0836 -4.8265 -3.4588 26 1 2.3891 -4.7252 -4.1594 27 1 0.6259 -6.2392 -3.4659 28 1 0.0819 -3.9785 -4.1534 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 0.0004 33 1 5.6579 1.0771 0.0062 34 1 7.2236 2.0377 0.0215 35 1 9.2111 3.4863 0.0176 36 1 8.9558 5.9332 0.0325 37 1 4.7131 5.5151 0.0315 38 1 2.5847 -3.1073 0.4974 39 1 0.8914 -2.5584 0.5009 40 1 0.7196 -5.9678 -0.8810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271135813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = -79.948177 kcal Electronic energy + Delta-G solvation = -29573.105899 eV Core-core repulsion = 24746.810766 eV Total energy + Delta-G solvation = -4826.295133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.52748 -48.04444 -47.97993 -41.02162 -40.18439 -38.66864 -35.08583 -33.54752 -32.68971 -31.87262 -31.36015 -30.78358 -26.91142 -26.47515 -26.38266 -24.81796 -22.93525 -22.67946 -21.45306 -19.93754 -19.78187 -18.85568 -18.73593 -18.49710 -16.97971 -16.75903 -16.60142 -16.31747 -15.59735 -15.36339 -15.18423 -14.89294 -14.79534 -14.62169 -14.46025 -14.36432 -14.27149 -14.13503 -14.09879 -14.03089 -13.24745 -13.11717 -13.06488 -12.51144 -12.38886 -12.29010 -12.21018 -11.80097 -11.72442 -11.46038 -11.14225 -10.85889 -10.55634 -10.29245 -10.09633 -9.85764 -9.75990 -9.64527 -9.58365 -8.67772 -8.02374 -7.54357 -6.29226 -4.37262 0.14835 0.51886 2.20699 2.22302 2.58627 2.75242 3.15146 3.20820 3.24886 3.28095 3.29152 3.57904 3.69751 3.76203 4.02616 4.20071 4.27604 4.27668 4.45537 4.51917 4.77418 4.93273 5.04420 5.26016 5.35620 5.53924 5.61763 5.63738 5.65425 5.87435 6.05764 6.07446 6.14642 6.41629 6.46174 6.64165 6.87909 7.00018 7.31993 7.52625 7.62950 7.84371 7.98189 8.05187 8.56254 8.70086 9.29319 10.78017 Molecular weight = 353.11amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.001921 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.307846 B =14575.503003 C =15011.038714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.261 3.739 5 N -0.623 5.623 6 C 0.563 3.437 7 O -0.506 6.506 8 C -0.125 4.125 9 C -0.054 4.054 10 C -0.124 4.124 11 C -0.047 4.047 12 C -0.192 4.192 13 C 0.511 3.489 14 F -0.175 7.175 15 F -0.177 7.177 16 F -0.173 7.173 17 C -0.010 4.010 18 N -0.318 5.318 19 N -0.315 5.315 20 C 0.258 3.742 21 C -0.538 4.538 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.409 0.591 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.574 21.355 3.064 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.008 3.992 5 N -0.270 5.270 6 C 0.350 3.650 7 O -0.380 6.380 8 C -0.128 4.128 9 C -0.073 4.073 10 C -0.142 4.142 11 C -0.066 4.066 12 C -0.194 4.194 13 C 0.457 3.543 14 F -0.156 7.156 15 F -0.158 7.158 16 F -0.154 7.154 17 C -0.029 4.029 18 N -0.148 5.148 19 N -0.097 5.097 20 C 0.141 3.859 21 C -0.577 4.577 22 H 0.082 0.918 23 C -0.137 4.137 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.246 0.754 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.384 20.375 3.116 24.576 hybrid contribution 0.019 0.205 -0.950 0.972 sum 13.403 20.580 2.165 24.655 Atomic orbital electron populations 1.20392 0.87794 1.03963 1.02616 1.21081 0.94998 0.87063 1.00691 1.21252 0.89635 0.99892 1.21163 1.18901 0.86974 0.89609 1.03672 1.42249 1.07811 1.04801 1.72163 1.17956 0.88779 0.81155 0.77156 1.90754 1.25767 1.73851 1.47650 1.19784 0.93211 0.93491 1.06356 1.21678 0.91487 1.00963 0.93165 1.21139 0.99525 0.92610 1.00889 1.21184 0.95971 0.95987 0.93432 1.19913 0.96132 0.91164 1.12166 1.18186 0.73923 0.88247 0.73959 1.93244 1.96089 1.90597 1.35677 1.93195 1.54844 1.86486 1.81266 1.93225 1.47811 1.93217 1.81166 1.21033 0.98977 0.92094 0.90802 1.77253 1.00117 1.08323 1.29137 1.49029 1.00873 1.07882 1.51914 1.19711 0.96028 0.71205 0.98974 1.21276 1.47097 0.97998 0.91300 0.91779 1.24926 0.94618 0.96020 0.98163 1.69903 1.44700 1.07041 1.31237 0.86410 0.78832 0.77692 0.83726 1.19981 1.20932 1.19900 0.90998 0.89839 0.90540 0.82255 0.75421 0.84237 0.83782 0.84080 0.82991 0.92952 0.92709 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.89 36.01 0.36 -1.14 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.77 9.52 -39.83 -0.38 -6.15 16 4 C 0.26 5.12 8.11 -154.45 -1.25 3.87 16 5 N -0.62 -9.15 5.40 -12.00 -0.06 -9.21 16 6 C 0.56 7.86 7.74 -12.35 -0.10 7.77 16 7 O -0.51 -8.60 13.47 5.30 0.07 -8.53 16 8 C -0.13 -1.27 5.87 -104.97 -0.62 -1.89 16 9 C -0.05 -0.39 9.54 -39.18 -0.37 -0.76 16 10 C -0.12 -0.69 10.03 -39.64 -0.40 -1.08 16 11 C -0.05 -0.30 9.39 -39.49 -0.37 -0.67 16 12 C -0.19 -1.59 5.45 -104.68 -0.57 -2.16 16 13 C 0.51 4.40 3.36 36.01 0.12 4.52 16 14 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 15 F -0.18 -1.46 16.45 2.25 0.04 -1.42 16 16 F -0.17 -1.68 16.46 2.25 0.04 -1.64 16 17 C -0.01 -0.10 8.94 -39.18 -0.35 -0.45 16 18 N -0.32 -7.10 12.59 31.43 0.40 -6.71 16 19 N -0.31 -7.29 3.59 -58.33 -0.21 -7.50 16 20 C 0.26 6.49 5.81 -5.19 -0.03 6.46 16 21 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 22 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 25 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.16 3.09 5.91 -52.49 -0.31 2.78 16 33 H 0.41 4.63 6.86 -40.82 -0.28 4.35 16 34 H 0.14 0.72 6.41 -52.48 -0.34 0.38 16 35 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 36 H 0.14 0.59 7.59 -52.49 -0.40 0.19 16 37 H 0.15 1.56 7.19 -52.49 -0.38 1.18 16 38 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -32.00 362.75 -7.20 -39.20 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.74 Total: 3.59 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.95 Total: -3.54 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.86 Total: -47.34 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.62 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.00 -7.20 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271135813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.751 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds