Wall clock time and date at job start Tue Mar 31 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35906 * 117.00321 * 2 1 4 4 C 1.38761 * 120.04724 * 0.02795 * 3 2 1 5 5 C 1.38131 * 119.96313 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.06363 * 359.71373 * 5 4 3 7 7 C 1.50699 * 119.94722 * 180.29642 * 6 5 4 8 8 N 1.46897 * 109.47703 * 260.25773 * 7 6 5 9 9 C 1.46896 * 111.00128 * 190.00074 * 8 7 6 10 10 C 1.50709 * 109.46970 * 164.79779 * 9 8 7 11 11 H 1.08000 * 120.00088 * 1.44868 * 10 9 8 12 12 C 1.37876 * 119.99805 * 181.44111 * 10 9 8 13 13 N 1.31518 * 119.99507 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00167 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47052 * 89.99983 * 14 12 10 16 16 H 1.48500 * 109.46909 * 209.99438 * 14 12 10 17 17 H 1.48500 * 109.46970 * 329.99967 * 14 12 10 18 18 C 1.46901 * 110.99951 * 66.04679 * 8 7 6 19 19 C 1.53004 * 109.46910 * 63.24642 * 18 8 7 20 20 C 1.47201 * 109.47088 * 182.35817 * 19 18 8 21 21 N 7.83838 * 82.07475 * 335.12939 * 2 1 3 22 22 C 1.38334 * 120.10056 * 0.56350 * 6 5 4 23 23 Br 1.89102 * 119.98282 * 179.72293 * 22 6 5 24 24 C 1.38258 * 120.03773 * 359.43939 * 22 6 5 25 25 H 1.09006 * 109.47345 * 59.99406 * 1 2 3 26 26 H 1.09001 * 109.47567 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47291 * 300.00048 * 1 2 3 28 28 H 1.07997 * 120.02056 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96896 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47470 * 20.26638 * 7 6 5 31 31 H 1.09002 * 109.46643 * 140.25789 * 7 6 5 32 32 H 1.08992 * 109.47305 * 284.79879 * 9 8 7 33 33 H 1.09001 * 109.47152 * 44.80861 * 9 8 7 34 34 H 0.97003 * 119.99492 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.47347 * 183.25102 * 18 8 7 36 36 H 1.09000 * 109.47398 * 303.25143 * 18 8 7 37 37 H 1.09002 * 109.47463 * 302.36065 * 19 18 8 38 38 H 1.09001 * 109.46827 * 62.36197 * 19 18 8 39 39 H 1.07990 * 120.03365 * 180.26144 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9203 3.6051 0.0011 6 6 3.3011 3.6769 0.0071 7 6 3.9845 5.0200 0.0144 8 7 4.4212 5.3548 -1.3477 9 6 5.2944 6.5360 -1.3452 10 6 6.0143 6.6313 -2.6657 11 1 5.8231 5.9019 -3.4389 12 6 6.9171 7.6497 -2.8868 13 7 7.5450 7.7330 -4.0394 14 14 7.2484 8.9109 -1.5493 15 1 8.3662 8.4412 -0.6918 16 1 7.6139 10.2085 -2.1721 17 1 6.0285 9.0856 -0.7206 18 6 3.2683 5.5543 -2.2360 19 6 2.4492 6.7508 -1.7476 20 6 1.2635 6.9161 -2.6041 21 7 0.3482 7.0435 -3.2651 22 6 4.0561 2.5178 0.0007 23 35 5.9444 2.6199 0.0009 24 6 3.4309 1.2846 0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2127 2.3201 0.0006 29 1 1.3329 4.5114 0.0012 30 1 3.2887 5.7799 0.3700 31 1 4.8509 4.9831 0.6749 32 1 4.6928 7.4322 -1.1938 33 1 6.0233 6.4473 -0.5396 34 1 8.1804 8.4493 -4.1948 35 1 3.6196 5.7440 -3.2502 36 1 2.6449 4.6601 -2.2287 37 1 2.1332 6.5792 -0.7186 38 1 3.0599 7.6525 -1.7946 39 1 4.0204 0.3798 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289375166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:53 Heat of formation + Delta-G solvation = 31.444429 kcal Electronic energy + Delta-G solvation = -22754.270810 eV Core-core repulsion = 19323.228139 eV Total energy + Delta-G solvation = -3431.042671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 352.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36938 -38.61538 -37.12051 -35.94731 -32.65740 -32.22610 -31.53074 -30.38940 -29.33599 -27.87796 -27.12411 -25.23890 -23.24914 -22.61119 -21.18474 -19.72339 -18.18463 -17.63019 -16.78467 -16.52909 -15.96229 -15.56220 -15.36383 -14.65132 -14.47998 -14.24895 -14.01948 -13.80703 -13.54449 -13.47887 -12.99758 -12.52249 -12.33405 -12.25117 -12.11913 -11.99488 -11.64951 -11.53359 -11.42400 -11.18643 -10.94791 -10.73706 -10.55644 -10.42069 -10.21757 -9.96684 -9.76140 -9.35110 -8.76814 -8.58483 -8.21541 -7.49383 -6.06250 -4.03717 1.05076 1.26548 1.82432 2.98628 3.01032 3.12466 3.25931 3.32190 3.34974 3.51104 4.20571 4.39076 4.57676 4.72845 4.83079 4.84847 4.89111 4.96925 5.16072 5.20678 5.25131 5.27876 5.30622 5.44092 5.58944 5.70753 5.74615 5.90087 6.04755 6.11056 6.17530 6.37966 6.44963 6.54447 6.76077 6.83098 7.17723 7.51906 7.73174 7.79278 7.89540 8.60919 9.04884 9.54635 11.06860 Molecular weight = 352.05amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.004572 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.594970 B = 6123.266085 C = 8078.881948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.196 4.196 5 C -0.072 4.072 6 C -0.077 4.077 7 C 0.077 3.923 8 N -0.502 5.502 9 C 0.157 3.843 10 C -0.505 4.505 11 H 0.082 0.918 12 C 0.070 3.930 13 N -0.898 5.898 14 Si 0.869 3.131 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.267 1.267 18 C 0.069 3.931 19 C -0.076 4.076 20 C 0.222 3.778 21 N -0.456 5.456 22 C -0.030 4.030 23 Br -0.021 7.021 24 C -0.128 4.128 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.043 0.957 31 H 0.090 0.910 32 H -0.003 1.003 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 -12.656 13.113 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.079 3.921 4 C -0.215 4.215 5 C -0.092 4.092 6 C -0.080 4.080 7 C -0.051 4.051 8 N -0.224 5.224 9 C 0.032 3.968 10 C -0.543 4.543 11 H 0.100 0.900 12 C -0.132 4.132 13 N -0.537 5.537 14 Si 0.696 3.304 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.192 1.192 18 C -0.061 4.061 19 C -0.118 4.118 20 C -0.095 4.095 21 N -0.134 5.134 22 C -0.111 4.111 23 Br 0.066 6.934 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.014 0.986 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.829 -12.898 11.847 20.591 hybrid contribution -0.520 1.514 1.165 1.980 sum -11.349 -11.385 13.012 20.681 Atomic orbital electron populations 1.23056 0.78370 1.03901 1.01418 1.86063 1.21337 1.26746 1.88869 1.18819 0.91797 0.84258 0.97240 1.21256 1.00068 0.92248 1.07962 1.20836 0.93368 0.97257 0.97695 1.19716 0.92897 0.94823 1.00515 1.21259 0.99074 0.91266 0.93512 1.62234 1.15085 1.39619 1.05414 1.20320 0.91655 0.85742 0.99111 1.20965 1.22492 1.12272 0.98595 0.89952 1.24874 0.95680 0.97440 0.95176 1.69889 1.27689 1.32999 1.23114 0.86970 0.79185 0.81565 0.82647 1.20176 1.21369 1.19166 1.22137 0.90580 0.93605 0.99809 1.20265 0.89521 1.05353 0.96620 1.29216 0.94018 0.92566 0.93737 1.81167 1.12378 1.09635 1.10233 1.21462 0.91865 0.94229 1.03513 1.96802 1.00617 1.98900 1.97117 1.20275 0.91604 0.97338 1.05617 0.92557 0.88269 0.92662 0.85279 0.85309 0.93954 0.89198 0.98569 0.95387 0.92686 0.88454 0.91442 0.88334 0.86244 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.43 10.50 -19.44 -0.20 -3.63 16 3 C 0.12 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.20 -2.08 9.04 -39.43 -0.36 -2.43 16 5 C -0.07 -0.81 8.61 -39.61 -0.34 -1.15 16 6 C -0.08 -1.01 4.59 -104.57 -0.48 -1.49 16 7 C 0.08 1.08 4.22 -4.98 -0.02 1.05 16 8 N -0.50 -8.64 4.65 -237.52 -1.11 -9.75 16 9 C 0.16 3.23 3.63 -4.97 -0.02 3.21 16 10 C -0.50 -12.97 9.15 -34.44 -0.32 -13.29 16 11 H 0.08 2.36 7.66 -52.49 -0.40 1.96 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 14 Si 0.87 20.03 27.44 -169.99 -4.66 15.36 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -5.71 6.58 56.52 0.37 -5.33 16 18 C 0.07 1.08 4.91 -3.82 -0.02 1.06 16 19 C -0.08 -1.01 5.06 -29.52 -0.15 -1.16 16 20 C 0.22 3.32 15.43 -20.75 -0.32 3.00 16 21 N -0.46 -7.82 18.54 42.16 0.78 -7.04 16 22 C -0.03 -0.41 6.22 -39.54 -0.25 -0.66 16 23 Br -0.02 -0.31 32.00 -68.01 -2.18 -2.48 16 24 C -0.13 -1.62 9.73 -39.41 -0.38 -2.01 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 28 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 29 H 0.13 1.20 7.78 -52.49 -0.41 0.79 16 30 H 0.04 0.51 5.92 -51.93 -0.31 0.20 16 31 H 0.09 1.31 6.87 -51.93 -0.36 0.95 16 32 H 0.00 -0.06 5.01 -51.93 -0.26 -0.32 16 33 H 0.03 0.59 7.17 -51.93 -0.37 0.22 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 1.80 7.18 -51.93 -0.37 1.42 16 36 H 0.07 0.98 6.45 -51.93 -0.33 0.65 16 37 H 0.10 1.04 5.98 -51.93 -0.31 0.73 16 38 H 0.12 1.72 6.31 -51.93 -0.33 1.40 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -30.41 342.90 -8.03 -38.44 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.59 Total: -0.81 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.02 Total: -9.66 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.45 Total: -42.38 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.63 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.66 Total: 15.36 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.18 Total: -2.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.41 -8.03 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289375166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.883 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds