Wall clock time and date at job start Tue Mar 31 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 C 1.50705 * 109.47259 * 239.99838 * 2 1 3 5 5 H 1.07999 * 120.00241 * 239.99499 * 4 2 1 6 6 C 1.37877 * 119.99583 * 60.00317 * 4 2 1 7 7 N 1.31515 * 120.00365 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99881 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46794 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47480 * 119.99570 * 8 6 4 11 11 H 1.48504 * 109.47022 * 239.99926 * 8 6 4 12 12 C 1.53001 * 109.47299 * 119.99932 * 2 1 3 13 13 S 1.81003 * 109.47029 * 300.00308 * 12 2 1 14 14 C 1.76199 * 100.00093 * 179.97438 * 13 12 2 15 15 N 1.31440 * 126.37983 * 359.97438 * 14 13 12 16 16 N 1.28504 * 110.07897 * 180.02562 * 15 14 13 17 17 C 1.31270 * 109.96446 * 359.97438 * 16 15 14 18 18 C 1.47833 * 126.46639 * 179.97438 * 17 16 15 19 19 C 1.39581 * 120.15101 * 180.02562 * 18 17 16 20 20 C 1.37930 * 119.86552 * 179.97438 * 19 18 17 21 21 C 1.38388 * 120.17460 * 359.97438 * 20 19 18 22 22 C 1.38310 * 120.30319 * 359.75417 * 21 20 19 23 23 C 1.38105 * 120.13430 * 0.50716 * 22 21 20 24 24 Cl 1.73599 * 120.09225 * 179.77262 * 23 22 21 25 25 N 1.36578 * 126.38465 * 180.26065 * 14 13 12 26 26 N 1.36601 * 127.17249 * 0.02841 * 25 14 13 27 27 H 1.08997 * 109.47710 * 299.99870 * 1 2 3 28 28 H 1.09005 * 109.47220 * 60.00054 * 1 2 3 29 29 H 1.09003 * 109.47408 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47569 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46925 * 300.00126 * 3 2 1 32 32 H 1.09007 * 109.47131 * 59.99627 * 3 2 1 33 33 H 0.96998 * 119.99870 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47256 * 180.02562 * 12 2 1 35 35 H 1.09007 * 109.46943 * 59.99992 * 12 2 1 36 36 H 1.08004 * 120.06338 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.91478 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.84668 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.93390 * 180.27360 * 22 21 20 40 40 H 1.00901 * 110.99840 * 270.13100 * 26 25 14 41 41 H 1.00892 * 111.00292 * 34.08075 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 6 2.0400 -0.7212 1.2492 13 16 1.4366 0.1320 2.7271 14 6 2.1520 -0.8810 3.9788 15 7 2.9021 -1.9432 3.7878 16 7 3.2547 -2.4433 4.9179 17 6 2.7521 -1.7312 5.8995 18 6 2.9277 -1.9814 7.3459 19 6 2.3299 -1.1353 8.2813 20 6 2.4972 -1.3745 9.6294 21 6 3.2551 -2.4509 10.0561 22 6 3.8459 -3.2971 9.1353 23 6 3.6913 -3.0663 7.7825 24 17 4.4382 -4.1257 6.6277 25 7 2.0259 -0.7119 5.3282 26 7 1.3263 0.2666 5.9756 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7082 1.1609 -3.4844 34 1 3.1299 -0.7208 1.2495 35 1 1.6766 -1.7490 1.2492 36 1 1.7377 -0.2950 7.9502 37 1 2.0354 -0.7201 10.3539 38 1 3.3822 -2.6335 11.1129 39 1 4.4325 -4.1379 9.4749 40 1 1.9078 1.0729 6.1483 41 1 0.4986 0.5220 5.4583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408522352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:15 Heat of formation + Delta-G solvation = 119.607154 kcal Electronic energy + Delta-G solvation = -25546.708258 eV Core-core repulsion = 21808.961918 eV Total energy + Delta-G solvation = -3737.746341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.82135 -39.37955 -36.66925 -36.34742 -36.06964 -32.77132 -31.61590 -31.06602 -29.81253 -29.33305 -26.37717 -25.79233 -25.19768 -23.89857 -23.55059 -22.15513 -21.18850 -19.36800 -18.57577 -17.61463 -17.26894 -16.55587 -16.16671 -16.05607 -15.27593 -15.12837 -14.78151 -14.41523 -14.08425 -13.85883 -13.74611 -13.34399 -12.82045 -12.41176 -12.36207 -11.97715 -11.81999 -11.59652 -11.56030 -11.38009 -11.28256 -10.95706 -10.80656 -10.68497 -10.52152 -10.49391 -10.36739 -10.20689 -10.04716 -9.73948 -9.66521 -9.55092 -9.12376 -8.78416 -8.76878 -8.43792 -7.27862 -6.06687 -4.17310 0.43939 0.91042 1.24504 1.82622 2.08415 2.12427 2.64182 2.80859 3.25609 3.34412 3.39801 3.45839 3.75744 4.36742 4.39048 4.50192 4.56963 4.92626 4.96732 5.18534 5.20319 5.32390 5.34646 5.58077 5.74570 5.88989 5.93690 6.01564 6.02901 6.10649 6.20700 6.42282 6.44277 6.71800 6.79909 6.90858 6.93410 7.22908 7.26248 7.48532 7.65847 7.93472 8.06283 8.30767 8.61792 8.82545 9.48663 10.94734 Molecular weight = 352.08amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002433 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.450990 B =11505.324560 C =12616.844214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 C -0.135 4.135 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.061 4.061 13 S -0.023 6.023 14 C 0.141 3.859 15 N -0.280 5.280 16 N -0.241 5.241 17 C 0.224 3.776 18 C -0.001 4.001 19 C -0.089 4.089 20 C -0.121 4.121 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.008 4.008 24 Cl -0.029 7.029 25 N -0.309 5.309 26 N -0.583 5.583 27 H 0.014 0.986 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.364 0.636 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 -0.600 25.045 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.077 3.923 3 C -0.193 4.193 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.209 4.209 13 S 0.207 5.793 14 C -0.233 4.233 15 N -0.126 5.126 16 N -0.083 5.083 17 C -0.042 4.042 18 C -0.005 4.005 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.037 4.037 24 Cl 0.000 7.000 25 N -0.093 5.093 26 N -0.215 5.215 27 H 0.033 0.967 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.209 -1.205 24.698 24.757 hybrid contribution 0.477 0.087 -1.132 1.232 sum 1.687 -1.118 23.566 23.653 Atomic orbital electron populations 1.21927 0.97284 0.99600 1.00564 1.18099 0.92996 0.92503 0.88656 1.21927 0.98853 0.98022 1.00545 1.21022 1.31673 1.12227 0.89409 0.92171 1.24878 0.94801 0.94922 0.98845 1.69809 1.36527 1.22730 1.23288 0.86485 0.78681 0.79776 0.82805 1.19664 1.20976 1.20993 1.24198 1.03730 1.01862 0.91114 1.85615 1.62961 1.34079 0.96645 1.28161 1.04372 1.03117 0.87631 1.74886 1.13267 1.06960 1.17460 1.74757 1.18709 1.20991 0.93840 1.22542 0.98219 0.88624 0.94781 1.17307 1.00070 0.96218 0.86900 1.21695 0.97733 0.99266 0.92210 1.21170 0.99186 0.98111 0.95461 1.21267 0.96485 0.94363 0.99742 1.21011 1.01274 1.00900 0.90307 1.21015 0.98007 0.93391 0.91329 1.98439 1.79826 1.63383 1.58316 1.45149 1.39555 1.21467 1.03126 1.59827 1.07096 1.11406 1.43158 0.96669 0.89300 0.95080 0.95117 0.89291 0.96718 0.92928 0.89665 0.89624 0.82839 0.84977 0.84927 0.84437 0.81857 0.80229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.01 37.15 0.30 -2.78 16 2 C 0.08 1.84 0.52 -155.66 -0.08 1.76 16 3 C -0.14 -3.06 8.01 37.16 0.30 -2.76 16 4 C -0.50 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.40 9.35 55.43 0.52 -22.88 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.06 -1.25 4.17 37.16 0.15 -1.10 16 13 S -0.02 -0.39 19.02 -107.50 -2.04 -2.43 16 14 C 0.14 2.41 8.13 -88.17 -0.72 1.69 16 15 N -0.28 -5.51 11.59 30.71 0.36 -5.15 16 16 N -0.24 -4.42 9.56 32.59 0.31 -4.11 16 17 C 0.22 3.46 7.79 -153.76 -1.20 2.26 16 18 C 0.00 -0.02 5.88 -104.94 -0.62 -0.63 16 19 C -0.09 -0.84 9.56 -39.19 -0.37 -1.21 16 20 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 21 C -0.10 -0.69 10.04 -39.50 -0.40 -1.09 16 22 C -0.12 -1.02 9.82 -39.60 -0.39 -1.40 16 23 C -0.01 -0.10 6.35 -39.10 -0.25 -0.35 16 24 Cl -0.03 -0.39 26.21 -51.86 -1.36 -1.75 16 25 N -0.31 -4.35 3.83 -10.37 -0.04 -4.39 16 26 N -0.58 -5.37 7.79 60.35 0.47 -4.90 16 27 H 0.01 0.30 6.91 -51.93 -0.36 -0.06 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 32 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 33 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 35 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 36 H 0.15 1.25 5.55 -52.48 -0.29 0.96 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.36 2.50 9.21 -181.36 -1.67 0.83 16 41 H 0.38 3.11 8.80 -181.37 -1.60 1.52 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -29.91 361.99 -12.79 -42.70 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.41 Total: 0.38 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -4.04 Total: -18.54 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 1.62 Total: -41.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.04 Total: -2.43 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.36 Total: -1.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.91 -12.79 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408522352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.309 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds