Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 119.99602 * 2 1 4 4 C 1.38214 * 119.99991 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99695 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99703 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.00439 * 359.97438 * 5 4 3 8 8 C 1.50698 * 120.00153 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46915 * 82.76008 * 8 7 5 10 10 O 1.21313 * 120.00072 * 5.23138 * 9 8 7 11 11 N 1.34775 * 120.00117 * 185.22859 * 9 8 7 12 12 N 1.40097 * 120.00271 * 185.01965 * 11 9 8 13 13 C 1.29843 * 120.00360 * 185.80764 * 12 11 9 14 14 C 1.47306 * 119.99870 * 9.38961 * 13 12 11 15 15 C 1.39684 * 120.19902 * 25.66678 * 14 13 12 16 16 C 1.37885 * 119.90904 * 180.29565 * 15 14 13 17 17 C 1.38528 * 120.31275 * 359.68117 * 16 15 14 18 18 C 1.38114 * 120.40668 * 0.02562 * 17 16 15 19 19 C 1.38718 * 120.08321 * 0.02562 * 18 17 16 20 20 O 1.35613 * 120.15703 * 179.97438 * 19 18 17 21 21 C 1.34805 * 117.00126 * 354.26287 * 20 19 18 22 22 H 1.08003 * 119.99529 * 5.13062 * 21 20 19 23 23 C 1.38641 * 120.00067 * 184.84922 * 21 20 19 24 24 N 1.31557 * 120.00157 * 355.22828 * 23 21 20 25 25 Si 1.86802 * 119.99742 * 175.22397 * 23 21 20 26 26 H 1.48505 * 109.47220 * 90.00445 * 25 23 21 27 27 H 1.48500 * 109.47171 * 210.00255 * 25 23 21 28 28 H 1.48494 * 109.47515 * 330.00590 * 25 23 21 29 29 C 1.38210 * 120.00298 * 180.27128 * 2 1 3 30 30 H 1.08994 * 109.46678 * 90.00453 * 1 2 3 31 31 H 1.09004 * 109.46691 * 210.00011 * 1 2 3 32 32 H 1.08996 * 109.47461 * 329.99728 * 1 2 3 33 33 H 1.08003 * 119.99870 * 0.02562 * 3 2 1 34 34 H 1.07989 * 120.00364 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.47205 * 270.01638 * 6 5 4 36 36 H 1.09001 * 109.47364 * 30.01907 * 6 5 4 37 37 H 1.09006 * 109.47095 * 150.02021 * 6 5 4 38 38 H 1.09000 * 109.47278 * 322.75987 * 8 7 5 39 39 H 1.09002 * 109.46997 * 202.75832 * 8 7 5 40 40 H 0.96999 * 120.00026 * 5.02047 * 11 9 8 41 41 H 1.08002 * 120.00224 * 189.39061 * 13 12 11 42 42 H 1.08002 * 120.04385 * 359.97438 * 15 14 13 43 43 H 1.08000 * 119.84334 * 179.69901 * 16 15 14 44 44 H 1.08000 * 119.79251 * 180.02562 * 17 16 15 45 45 H 1.08006 * 119.95405 * 180.02562 * 18 17 16 46 46 H 0.97001 * 119.99935 * 185.00084 * 24 23 21 47 47 H 1.07994 * 120.00130 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1976 -0.0005 5 6 4.2717 0.0002 -0.0016 6 6 5.7787 0.0003 -0.0028 7 6 3.5807 -1.1968 -0.0016 8 6 4.3343 -2.5018 -0.0034 9 6 4.7422 -2.8482 1.4054 10 8 4.3693 -2.1592 2.3317 11 7 5.5212 -3.9235 1.6364 12 7 5.8139 -4.3070 2.9517 13 6 6.6535 -5.2719 3.1751 14 6 7.4524 -5.8242 2.0676 15 6 7.7380 -5.0396 0.9478 16 6 8.4812 -5.5646 -0.0882 17 6 8.9523 -6.8656 -0.0214 18 6 8.6828 -7.6510 1.0823 19 6 7.9358 -7.1400 2.1335 20 8 7.6698 -7.9099 3.2177 21 6 8.0571 -9.1999 3.1622 22 1 8.6278 -9.5564 2.3174 23 6 7.7279 -10.0675 4.1923 24 7 7.1200 -9.6125 5.2666 25 14 8.1475 -11.8826 4.0546 26 1 9.5003 -12.1221 4.6185 27 1 7.1482 -12.6803 4.8098 28 1 8.1277 -12.2884 2.6263 29 6 2.1981 -1.1969 -0.0057 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1328 -0.0010 35 1 6.1413 0.0011 -1.0308 36 1 6.1424 0.8899 0.5115 37 1 6.1425 -0.8901 0.5101 38 1 5.2238 -2.4070 -0.6262 39 1 3.6949 -3.2901 -0.4007 40 1 5.8793 -4.4319 0.8920 41 1 6.7661 -5.6696 4.1729 42 1 7.3728 -4.0248 0.8912 43 1 8.6973 -4.9586 -0.9556 44 1 9.5340 -7.2683 -0.8375 45 1 9.0540 -8.6642 1.1268 46 1 6.9547 -10.2040 6.0174 47 1 1.6582 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409364618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = 34.308078 kcal Electronic energy + Delta-G solvation = -29521.885810 eV Core-core repulsion = 25443.660945 eV Total energy + Delta-G solvation = -4078.224864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.30152 -39.59537 -38.74543 -37.09081 -35.73319 -34.29877 -32.70832 -32.53175 -31.87960 -29.96934 -29.42667 -29.10318 -27.77337 -25.61189 -24.92892 -23.51261 -22.35088 -21.91239 -21.24430 -20.11275 -19.83940 -18.25243 -17.38337 -17.12760 -16.25778 -16.18423 -15.90923 -15.07405 -15.01454 -14.78043 -14.59632 -14.38240 -14.18568 -14.00831 -13.94118 -13.58442 -13.36734 -13.22473 -13.06254 -12.90886 -12.79682 -12.65855 -12.29791 -12.07209 -11.91058 -11.80466 -11.61383 -11.47434 -11.33074 -11.08135 -11.07077 -11.04561 -10.97837 -10.60225 -10.07209 -9.76424 -9.47310 -9.07414 -8.94766 -8.85388 -8.47027 -8.06160 -7.37964 -6.66864 -4.26229 1.21704 1.31175 1.35141 2.03014 2.53106 2.91616 3.00146 3.02868 3.07415 3.24896 3.66202 3.77559 4.31727 4.46819 4.62386 4.75145 4.81776 4.87327 4.89660 4.92660 5.04482 5.08441 5.20273 5.26101 5.29911 5.34517 5.41173 5.43051 5.49213 5.49275 5.60394 5.62834 5.66638 5.79143 5.80140 5.90870 5.99909 6.11021 6.33587 6.34787 6.42499 6.48372 6.51196 6.55206 6.83527 6.91818 6.93978 7.05768 7.11612 7.43221 7.48001 7.73854 7.89546 8.74262 8.76515 9.39062 10.48415 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002065 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.407225 B =13557.208464 C =14388.220806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.101 4.101 9 C 0.524 3.476 10 O -0.506 6.506 11 N -0.592 5.592 12 N -0.266 5.266 13 C 0.162 3.838 14 C -0.196 4.196 15 C -0.081 4.081 16 C -0.213 4.213 17 C -0.057 4.057 18 C -0.228 4.228 19 C 0.179 3.821 20 O -0.159 6.159 21 C -0.398 4.398 22 H 0.096 0.904 23 C 0.045 3.955 24 N -0.849 5.849 25 Si 0.943 3.057 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.266 1.266 29 C -0.101 4.101 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.392 0.608 41 H 0.185 0.815 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.133 0.867 46 H 0.275 0.725 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 13.766 -14.028 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.174 4.174 7 C -0.060 4.060 8 C -0.142 4.142 9 C 0.310 3.690 10 O -0.378 6.378 11 N -0.340 5.340 12 N -0.070 5.070 13 C -0.046 4.046 14 C -0.201 4.201 15 C -0.101 4.101 16 C -0.232 4.232 17 C -0.076 4.076 18 C -0.247 4.247 19 C 0.120 3.880 20 O -0.059 6.059 21 C -0.473 4.473 22 H 0.114 0.886 23 C -0.162 4.162 24 N -0.482 5.482 25 Si 0.767 3.233 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.190 1.190 29 C -0.119 4.119 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.202 0.798 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.151 0.849 46 H 0.085 0.915 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.996 14.905 -12.556 20.391 hybrid contribution 1.146 -1.836 -0.865 2.331 sum -4.850 13.069 -13.422 19.351 Atomic orbital electron populations 1.20765 0.91281 1.02798 1.02060 1.19825 0.95968 0.93061 1.00510 1.20970 0.94133 0.97360 1.01106 1.20933 0.94141 0.97246 1.01160 1.19677 0.95884 0.92579 0.99195 1.20832 0.91427 1.03161 1.01966 1.19053 0.93332 0.92898 1.00728 1.20691 1.02066 0.96844 0.94642 1.20353 0.77982 0.79741 0.90955 1.90719 1.52596 1.49237 1.45266 1.47679 1.50486 1.30263 1.05593 1.75371 1.17783 1.14465 0.99388 1.25317 0.89830 0.89749 0.99746 1.18604 1.09066 0.94329 0.98054 1.21155 0.98018 0.98141 0.92813 1.20536 1.06009 0.96688 0.99981 1.20934 0.96490 0.93585 0.96571 1.21210 1.05974 1.01964 0.95594 1.19354 0.91386 0.90249 0.86965 1.83887 1.68179 1.21951 1.31894 1.21397 1.35770 0.81434 1.08722 0.88643 1.25349 0.95708 1.00373 0.94774 1.70002 1.36741 1.37045 1.04395 0.85670 0.78586 0.79975 0.79055 1.19682 1.20027 1.18999 1.20855 0.93184 0.97730 1.00158 0.91363 0.91545 0.91665 0.86287 0.86147 0.91058 0.91375 0.91707 0.87877 0.87624 0.76318 0.79843 0.85988 0.87007 0.86959 0.84945 0.91490 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 5 C -0.07 -0.87 5.88 -104.62 -0.62 -1.48 16 6 C -0.12 -1.20 9.23 36.00 0.33 -0.87 16 7 C -0.06 -0.73 4.38 -104.62 -0.46 -1.19 16 8 C -0.10 -1.15 5.16 -29.04 -0.15 -1.30 16 9 C 0.52 8.40 6.97 -10.99 -0.08 8.33 16 10 O -0.51 -10.23 16.39 5.53 0.09 -10.14 16 11 N -0.59 -9.82 4.77 31.22 0.15 -9.68 16 12 N -0.27 -5.23 11.12 32.13 0.36 -4.87 16 13 C 0.16 3.16 10.86 -14.71 -0.16 3.00 16 14 C -0.20 -3.76 5.61 -104.89 -0.59 -4.34 16 15 C -0.08 -1.30 7.67 -39.17 -0.30 -1.60 16 16 C -0.21 -3.15 10.03 -39.60 -0.40 -3.55 16 17 C -0.06 -0.89 10.03 -39.52 -0.40 -1.29 16 18 C -0.23 -4.35 9.16 -39.45 -0.36 -4.71 16 19 C 0.18 3.84 6.66 -38.62 -0.26 3.59 16 20 O -0.16 -4.03 9.10 0.54 0.00 -4.02 16 21 C -0.40 -10.05 9.48 30.88 0.29 -9.76 16 22 H 0.10 2.21 5.21 -52.48 -0.27 1.93 16 23 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 24 N -0.85 -23.03 13.67 55.48 0.76 -22.27 16 25 Si 0.94 18.95 29.56 -169.99 -5.02 13.93 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 29 C -0.10 -1.20 9.33 -39.58 -0.37 -1.56 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.06 0.46 8.09 -51.93 -0.42 0.05 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.06 0.74 6.05 -51.93 -0.31 0.43 16 38 H 0.10 0.91 7.12 -51.93 -0.37 0.54 16 39 H 0.11 0.98 8.03 -51.93 -0.42 0.56 16 40 H 0.39 5.73 4.98 -182.60 -0.91 4.82 16 41 H 0.18 3.62 7.89 -52.49 -0.41 3.21 16 42 H 0.12 1.77 5.65 -52.49 -0.30 1.48 16 43 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.13 2.50 5.64 -52.48 -0.30 2.21 16 46 H 0.27 6.87 8.32 -40.82 -0.34 6.53 16 47 H 0.12 1.26 8.05 -52.49 -0.42 0.84 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -31.82 396.88 -8.95 -40.77 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.64 Total: 11.43 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -4.62 Total: -21.13 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 1.26 Total: -36.82 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.10 Total: -14.16 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.82 -8.95 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409364618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.078 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds