Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 119.99602 * 2 1 4 4 C 1.38214 * 119.99991 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99695 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99703 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.00439 * 359.97438 * 5 4 3 8 8 C 1.50698 * 120.00153 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46915 * 82.76008 * 8 7 5 10 10 O 1.21313 * 120.00072 * 5.23138 * 9 8 7 11 11 N 1.34775 * 120.00117 * 185.22859 * 9 8 7 12 12 N 1.40097 * 120.00271 * 185.01965 * 11 9 8 13 13 C 1.29843 * 120.00360 * 185.80764 * 12 11 9 14 14 C 1.47306 * 119.99870 * 9.38961 * 13 12 11 15 15 C 1.39684 * 120.19902 * 25.66678 * 14 13 12 16 16 C 1.37885 * 119.90904 * 180.29565 * 15 14 13 17 17 C 1.38528 * 120.31275 * 359.68117 * 16 15 14 18 18 C 1.38114 * 120.40668 * 0.02562 * 17 16 15 19 19 C 1.38718 * 120.08321 * 0.02562 * 18 17 16 20 20 O 1.35613 * 120.15703 * 179.97438 * 19 18 17 21 21 C 1.34805 * 117.00126 * 354.26287 * 20 19 18 22 22 H 1.08003 * 119.99529 * 5.13062 * 21 20 19 23 23 C 1.38641 * 120.00067 * 184.84922 * 21 20 19 24 24 N 1.31557 * 120.00157 * 355.22828 * 23 21 20 25 25 Si 1.86802 * 119.99742 * 175.22397 * 23 21 20 26 26 H 1.48505 * 109.47220 * 90.00445 * 25 23 21 27 27 H 1.48500 * 109.47171 * 210.00255 * 25 23 21 28 28 H 1.48494 * 109.47515 * 330.00590 * 25 23 21 29 29 C 1.38210 * 120.00298 * 180.27128 * 2 1 3 30 30 H 1.08994 * 109.46678 * 90.00453 * 1 2 3 31 31 H 1.09004 * 109.46691 * 210.00011 * 1 2 3 32 32 H 1.08996 * 109.47461 * 329.99728 * 1 2 3 33 33 H 1.08003 * 119.99870 * 0.02562 * 3 2 1 34 34 H 1.07989 * 120.00364 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.47205 * 270.01638 * 6 5 4 36 36 H 1.09001 * 109.47364 * 30.01907 * 6 5 4 37 37 H 1.09006 * 109.47095 * 150.02021 * 6 5 4 38 38 H 1.09000 * 109.47278 * 322.75987 * 8 7 5 39 39 H 1.09002 * 109.46997 * 202.75832 * 8 7 5 40 40 H 0.96999 * 120.00026 * 5.02047 * 11 9 8 41 41 H 1.08002 * 120.00224 * 189.39061 * 13 12 11 42 42 H 1.08002 * 120.04385 * 359.97438 * 15 14 13 43 43 H 1.08000 * 119.84334 * 179.69901 * 16 15 14 44 44 H 1.08000 * 119.79251 * 180.02562 * 17 16 15 45 45 H 1.08006 * 119.95405 * 180.02562 * 18 17 16 46 46 H 0.97001 * 119.99935 * 185.00084 * 24 23 21 47 47 H 1.07994 * 120.00130 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5804 1.1976 -0.0005 5 6 4.2717 0.0002 -0.0016 6 6 5.7787 0.0003 -0.0028 7 6 3.5807 -1.1968 -0.0016 8 6 4.3343 -2.5018 -0.0034 9 6 4.7422 -2.8482 1.4054 10 8 4.3693 -2.1592 2.3317 11 7 5.5212 -3.9235 1.6364 12 7 5.8139 -4.3070 2.9517 13 6 6.6535 -5.2719 3.1751 14 6 7.4524 -5.8242 2.0676 15 6 7.7380 -5.0396 0.9478 16 6 8.4812 -5.5646 -0.0882 17 6 8.9523 -6.8656 -0.0214 18 6 8.6828 -7.6510 1.0823 19 6 7.9358 -7.1400 2.1335 20 8 7.6698 -7.9099 3.2177 21 6 8.0571 -9.1999 3.1622 22 1 8.6278 -9.5564 2.3174 23 6 7.7279 -10.0675 4.1923 24 7 7.1200 -9.6125 5.2666 25 14 8.1475 -11.8826 4.0546 26 1 9.5003 -12.1221 4.6185 27 1 7.1482 -12.6803 4.8098 28 1 8.1277 -12.2884 2.6263 29 6 2.1981 -1.1969 -0.0057 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1328 -0.0010 35 1 6.1413 0.0011 -1.0308 36 1 6.1424 0.8899 0.5115 37 1 6.1425 -0.8901 0.5101 38 1 5.2238 -2.4070 -0.6262 39 1 3.6949 -3.2901 -0.4007 40 1 5.8793 -4.4319 0.8920 41 1 6.7661 -5.6696 4.1729 42 1 7.3728 -4.0248 0.8912 43 1 8.6973 -4.9586 -0.9556 44 1 9.5340 -7.2683 -0.8375 45 1 9.0540 -8.6642 1.1268 46 1 6.9547 -10.2040 6.0174 47 1 1.6582 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409364618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = 17.020934 kcal Electronic energy + Delta-G solvation = -29522.635436 eV Core-core repulsion = 25443.660945 eV Total energy + Delta-G solvation = -4078.974491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47041 -40.92970 -39.95547 -38.62029 -37.18778 -35.13266 -34.37384 -33.76678 -33.04951 -31.37905 -30.55548 -30.14090 -28.76382 -27.39371 -25.68093 -24.87190 -23.40906 -23.30295 -22.40557 -21.50967 -20.84940 -19.89087 -18.94583 -18.40917 -17.64074 -17.16228 -16.74075 -16.55249 -16.31314 -16.07643 -15.80829 -15.70930 -15.50165 -15.42544 -15.21911 -14.62397 -14.52709 -14.24437 -14.06629 -14.00513 -13.77250 -13.62874 -13.55899 -13.41355 -13.06575 -12.89288 -12.79391 -12.72654 -12.53959 -12.36653 -12.35615 -12.13401 -11.85779 -11.83097 -11.69380 -11.13103 -11.00255 -10.82615 -10.38723 -9.70019 -9.49928 -9.26859 -8.91613 -8.48559 -6.16406 -0.09914 0.37259 0.48987 0.60134 1.14827 1.37448 1.45800 1.54204 1.63251 1.89771 2.15137 2.78211 2.82628 3.12957 3.33067 3.55579 3.69385 3.81829 3.88810 3.96633 4.01943 4.12124 4.16630 4.27208 4.31288 4.33838 4.39664 4.46946 4.55562 4.58755 4.70126 4.78805 4.83468 4.84524 4.88392 4.89569 4.96537 5.08949 5.11859 5.16738 5.21829 5.37023 5.52035 5.52900 5.56713 5.66127 5.69343 5.72446 5.95480 6.08664 6.11492 6.18381 6.51279 6.95035 7.38846 7.69842 8.71811 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002065 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.407225 B =13557.208464 C =14388.220806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.124 4.124 4 C -0.127 4.127 5 C -0.091 4.091 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.091 4.091 9 C 0.524 3.476 10 O -0.553 6.553 11 N -0.586 5.586 12 N -0.287 5.287 13 C 0.156 3.844 14 C -0.202 4.202 15 C -0.081 4.081 16 C -0.181 4.181 17 C -0.048 4.048 18 C -0.241 4.241 19 C 0.148 3.852 20 O -0.210 6.210 21 C -0.414 4.414 22 H 0.109 0.891 23 C -0.016 4.016 24 N -0.911 5.911 25 Si 1.015 2.985 26 H -0.263 1.263 27 H -0.277 1.277 28 H -0.251 1.251 29 C -0.120 4.120 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.403 0.597 41 H 0.167 0.833 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.155 0.845 45 H 0.128 0.872 46 H 0.274 0.726 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 15.063 -18.353 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.091 4.091 6 C -0.172 4.172 7 C -0.081 4.081 8 C -0.131 4.131 9 C 0.313 3.687 10 O -0.428 6.428 11 N -0.335 5.335 12 N -0.091 5.091 13 C -0.053 4.053 14 C -0.206 4.206 15 C -0.101 4.101 16 C -0.200 4.200 17 C -0.067 4.067 18 C -0.260 4.260 19 C 0.094 3.906 20 O -0.114 6.114 21 C -0.490 4.490 22 H 0.126 0.874 23 C -0.216 4.216 24 N -0.548 5.548 25 Si 0.834 3.166 26 H -0.188 1.188 27 H -0.202 1.202 28 H -0.174 1.174 29 C -0.138 4.138 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.250 0.750 41 H 0.183 0.817 42 H 0.160 0.840 43 H 0.180 0.820 44 H 0.172 0.828 45 H 0.146 0.854 46 H 0.083 0.917 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.186 16.231 -16.957 24.039 hybrid contribution 0.893 -1.865 0.204 2.078 sum -4.293 14.366 -16.753 22.483 Atomic orbital electron populations 1.20800 0.89625 1.03186 1.03114 1.20194 0.97407 0.92994 1.00000 1.21313 0.94326 0.98211 1.00352 1.21255 0.94633 0.97832 1.00793 1.19985 0.96851 0.92881 0.99359 1.20850 0.90485 1.02538 1.03308 1.19249 0.93724 0.93430 1.01690 1.20761 1.03722 0.97250 0.91406 1.21332 0.76479 0.78441 0.92489 1.90699 1.54173 1.50665 1.47268 1.47713 1.50619 1.30603 1.04609 1.75299 1.17491 1.14324 1.01974 1.25106 0.90448 0.90062 0.99647 1.18853 1.08915 0.93940 0.98936 1.21435 0.98043 0.98650 0.92015 1.21152 1.02262 0.96350 1.00228 1.21415 0.95609 0.93551 0.96104 1.21390 1.05919 1.02491 0.96213 1.19886 0.92448 0.90932 0.87379 1.83879 1.70892 1.22409 1.34241 1.21861 1.35869 0.82040 1.09229 0.87411 1.26529 0.95724 1.05013 0.94286 1.70152 1.40254 1.38696 1.05676 0.84624 0.78373 0.73938 0.79621 1.18776 1.20197 1.17409 1.21110 0.93475 0.98547 1.00698 0.89898 0.91759 0.90688 0.84133 0.84321 0.88633 0.91102 0.93188 0.84717 0.85306 0.75003 0.81651 0.84031 0.82032 0.82782 0.85439 0.91714 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.11 -2.15 5.88 -19.86 -0.12 -2.27 16 3 C -0.12 -2.36 9.70 22.27 0.22 -2.15 16 4 C -0.13 -2.53 9.70 22.27 0.22 -2.32 16 5 C -0.09 -2.00 5.88 -19.87 -0.12 -2.11 16 6 C -0.12 -2.10 9.23 71.24 0.66 -1.44 16 7 C -0.08 -1.86 4.38 -19.87 -0.09 -1.94 16 8 C -0.09 -1.84 5.16 29.10 0.15 -1.69 16 9 C 0.52 16.29 6.97 87.66 0.61 16.90 16 10 O -0.55 -22.56 16.39 -3.13 -0.05 -22.61 16 11 N -0.59 -18.87 4.77 -173.51 -0.83 -19.69 16 12 N -0.29 -11.54 11.12 -52.26 -0.58 -12.13 16 13 C 0.16 6.40 10.86 87.37 0.95 7.35 16 14 C -0.20 -7.76 5.61 -20.03 -0.11 -7.87 16 15 C -0.08 -2.36 7.67 22.54 0.17 -2.19 16 16 C -0.18 -4.36 10.03 22.26 0.22 -4.14 16 17 C -0.05 -1.30 10.03 22.31 0.22 -1.08 16 18 C -0.24 -8.91 9.16 22.36 0.20 -8.70 16 19 C 0.15 6.52 6.66 22.89 0.15 6.67 16 20 O -0.21 -11.36 9.10 -20.98 -0.19 -11.55 16 21 C -0.41 -21.98 9.48 67.92 0.64 -21.33 16 22 H 0.11 5.14 5.21 -2.91 -0.02 5.12 16 23 C -0.02 -0.86 5.49 84.83 0.47 -0.40 16 24 N -0.91 -52.92 13.67 21.61 0.30 -52.62 16 25 Si 1.01 40.11 29.56 68.60 2.03 42.14 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 27 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 29 C -0.12 -2.71 9.33 22.27 0.21 -2.51 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.95 8.09 -2.38 -0.02 0.93 16 32 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.14 2.10 8.06 -2.92 -0.02 2.08 16 35 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 37 H 0.05 1.04 6.05 -2.38 -0.01 1.03 16 38 H 0.13 1.85 7.12 -2.39 -0.02 1.83 16 39 H 0.13 2.02 8.03 -2.39 -0.02 2.00 16 40 H 0.40 10.89 4.98 -213.32 -1.06 9.82 16 41 H 0.17 7.26 7.89 -2.91 -0.02 7.23 16 42 H 0.14 3.60 5.65 -2.91 -0.02 3.59 16 43 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.13 4.77 5.64 -2.91 -0.02 4.76 16 46 H 0.27 14.70 8.32 -92.71 -0.77 13.93 16 47 H 0.13 2.53 8.05 -2.91 -0.02 2.51 16 Total: -1.00 -75.87 396.88 6.00 -69.87 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -0.05 Total: 38.70 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 5.37 Total: -32.11 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.11 Total: -84.44 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.24 Total: -34.16 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -75.87 6.00 -69.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409364618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.896 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds