Wall clock time and date at job start Tue Mar 31 2020 06:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35963 * 117.00355 * 2 1 4 4 C 1.39284 * 119.87040 * 0.02562 * 3 2 1 5 5 C 1.37665 * 120.67484 * 179.97438 * 4 3 2 6 6 C 1.39213 * 119.93317 * 0.08114 * 5 4 3 7 7 C 1.40573 * 119.43809 * 359.90590 * 6 5 4 8 8 C 1.38144 * 119.87170 * 180.02562 * 3 2 1 9 9 C 1.46982 * 118.05748 * 180.02562 * 7 6 5 10 10 O 1.22015 * 120.72383 * 179.88279 * 9 7 6 11 11 C 1.42113 * 118.55398 * 359.85575 * 9 7 6 12 12 C 1.34590 * 120.00753 * 359.46004 * 11 9 7 13 13 N 1.36549 * 121.38249 * 1.33941 * 12 11 9 14 14 C 1.46502 * 118.60095 * 178.80830 * 13 12 11 15 15 C 1.52998 * 109.47142 * 269.99452 * 14 13 12 16 16 C 1.50693 * 115.54873 * 174.56886 * 15 14 13 17 17 H 1.08008 * 119.99848 * 219.76305 * 16 15 14 18 18 C 1.37877 * 120.00407 * 39.48676 * 16 15 14 19 19 N 1.31513 * 119.99634 * 356.14788 * 18 16 15 20 20 Si 1.86806 * 120.00070 * 176.14697 * 18 16 15 21 21 H 1.48507 * 109.46754 * 90.00155 * 20 18 16 22 22 H 1.48494 * 109.47151 * 209.99766 * 20 18 16 23 23 H 1.48500 * 109.47066 * 330.00212 * 20 18 16 24 24 C 1.53004 * 117.51620 * 320.26848 * 15 14 13 25 25 C 1.52998 * 59.99960 * 107.47816 * 24 15 14 26 26 C 1.51001 * 122.35678 * 181.00143 * 12 11 9 27 27 C 1.52604 * 110.92518 * 341.83058 * 26 12 11 28 28 C 1.53383 * 108.21089 * 51.09670 * 27 26 12 29 29 C 1.50677 * 116.81852 * 179.41207 * 11 9 7 30 30 H 1.09001 * 109.47422 * 60.00208 * 1 2 3 31 31 H 1.08997 * 109.47352 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47190 * 300.00141 * 1 2 3 33 33 H 1.08001 * 119.66384 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.03349 * 180.02562 * 5 4 3 35 35 H 1.07993 * 120.24510 * 0.02562 * 8 3 2 36 36 H 1.09008 * 109.46771 * 149.99242 * 14 13 12 37 37 H 1.09002 * 109.47175 * 29.99669 * 14 13 12 38 38 H 0.97005 * 119.99512 * 184.99659 * 19 18 16 39 39 H 1.09004 * 117.49438 * 214.97145 * 24 15 14 40 40 H 1.08997 * 117.49718 * 359.97438 * 24 15 14 41 41 H 1.08992 * 117.50098 * 252.50618 * 25 24 15 42 42 H 1.09001 * 117.51723 * 107.47596 * 25 24 15 43 43 H 1.09007 * 109.34069 * 221.34837 * 26 12 11 44 44 H 1.08996 * 108.95968 * 102.07464 * 26 12 11 45 45 H 1.09004 * 109.71291 * 291.42375 * 27 26 12 46 46 H 1.08992 * 109.75224 * 170.79850 * 27 26 12 47 47 H 1.08997 * 109.73553 * 171.37282 * 28 27 26 48 48 H 1.08999 * 109.74121 * 50.66774 * 28 27 26 49 49 H 1.08998 * 109.20609 * 282.58351 * 29 11 9 50 50 H 1.08999 * 109.20184 * 41.93474 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2851 2.3779 0.0005 5 6 1.8929 3.6131 0.0011 6 6 3.2820 3.7038 -0.0006 7 6 4.0512 2.5271 -0.0009 8 6 3.4259 1.2805 -0.0005 9 6 5.5151 2.6581 -0.0021 10 8 6.2295 1.6690 -0.0002 11 6 6.0804 3.9620 -0.0061 12 6 5.2789 5.0431 -0.0197 13 7 3.9190 4.9204 -0.0026 14 6 3.1050 6.1384 0.0079 15 6 2.8397 6.5620 1.4539 16 6 2.1193 7.8745 1.6249 17 1 2.4123 8.5527 2.4128 18 6 1.0899 8.2122 0.7721 19 7 0.7865 7.4246 -0.2365 20 14 0.1262 9.7883 1.0492 21 1 0.7734 10.9009 0.3084 22 1 -1.2645 9.6107 0.5598 23 1 0.1038 10.1062 2.4996 24 6 2.5471 5.4576 2.4717 25 6 3.8898 6.1905 2.5029 26 6 5.8223 6.4517 -0.0469 27 6 7.2846 6.4803 0.3884 28 6 8.0501 5.4364 -0.4343 29 6 7.5845 4.0509 0.0065 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2070 2.3126 0.0005 34 1 1.2926 4.5109 0.0019 35 1 4.0159 0.3760 -0.0014 36 1 2.1568 5.9460 -0.4942 37 1 3.6365 6.9351 -0.5124 38 1 0.1117 7.6965 -0.8782 39 1 1.8335 5.6806 3.2649 40 1 2.5432 4.4291 2.1110 41 1 4.7694 5.6441 2.1629 42 1 4.0598 6.8957 3.3164 43 1 5.2358 7.0779 0.6256 44 1 5.7425 6.8425 -1.0612 45 1 7.3574 6.2381 1.4487 46 1 7.7035 7.4701 0.2077 47 1 9.1204 5.5394 -0.2553 48 1 7.8385 5.5758 -1.4945 49 1 7.9468 3.8551 1.0157 50 1 7.9936 3.3029 -0.6726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596299455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:34 Heat of formation + Delta-G solvation = -6.112963 kcal Electronic energy + Delta-G solvation = -33121.018811 eV Core-core repulsion = 29079.155591 eV Total energy + Delta-G solvation = -4041.863219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33375 -39.42543 -38.19075 -37.30326 -36.24311 -34.75590 -32.46543 -31.63154 -31.01574 -29.79498 -29.03974 -27.13938 -26.33818 -25.49154 -24.36164 -22.91870 -22.23808 -21.27234 -21.17869 -19.99592 -19.03484 -18.11509 -17.95792 -16.79801 -16.62436 -15.78939 -15.63609 -15.40193 -15.28844 -14.85942 -14.62110 -14.28385 -13.96629 -13.83544 -13.58782 -13.52465 -13.13055 -13.00599 -12.75087 -12.60715 -12.43578 -12.30999 -12.19665 -11.96687 -11.80509 -11.61633 -11.47301 -11.18847 -10.96851 -10.75767 -10.69446 -10.63563 -10.53986 -10.45820 -10.31559 -10.23153 -9.67489 -9.17692 -9.00488 -8.99481 -8.77534 -8.43615 -8.23179 -6.81763 -6.38865 -4.44868 1.07212 1.38219 2.20618 3.07658 3.16222 3.18921 3.22041 3.41481 3.43329 4.11445 4.34885 4.56052 4.70797 4.81991 4.96225 5.03387 5.07164 5.11327 5.19038 5.20033 5.27111 5.32073 5.36220 5.47207 5.61059 5.62903 5.68955 5.73389 5.85101 5.88491 5.92677 6.03564 6.13938 6.15987 6.18629 6.22686 6.26610 6.32728 6.37200 6.47281 6.48185 6.52826 6.54163 6.60985 6.71959 6.81208 6.86897 6.91432 7.13066 7.15371 7.44784 7.52264 7.59714 7.77540 8.06318 8.40770 8.55040 9.19074 10.63316 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.007825 B = 0.005347 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3577.522028 B = 5235.775949 C = 8208.979591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.073 3.927 4 C -0.146 4.146 5 C -0.119 4.119 6 C 0.179 3.821 7 C -0.175 4.175 8 C -0.072 4.072 9 C 0.422 3.578 10 O -0.519 6.519 11 C -0.308 4.308 12 C 0.233 3.767 13 N -0.485 5.485 14 C 0.113 3.887 15 C 0.037 3.963 16 C -0.482 4.482 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.204 4.204 25 C -0.212 4.212 26 C -0.104 4.104 27 C -0.112 4.112 28 C -0.122 4.122 29 C -0.037 4.037 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.268 0.732 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -4.352 -2.064 5.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.028 3.972 4 C -0.166 4.166 5 C -0.139 4.139 6 C 0.076 3.924 7 C -0.179 4.179 8 C -0.091 4.091 9 C 0.312 3.688 10 O -0.404 6.404 11 C -0.316 4.316 12 C 0.121 3.879 13 N -0.172 5.172 14 C -0.006 4.006 15 C 0.036 3.964 16 C -0.520 4.520 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.242 4.242 25 C -0.249 4.249 26 C -0.141 4.141 27 C -0.150 4.150 28 C -0.159 4.159 29 C -0.075 4.075 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.132 -4.915 -2.189 6.225 hybrid contribution -1.077 0.949 0.270 1.461 sum 2.055 -3.966 -1.918 4.861 Atomic orbital electron populations 1.22993 0.78956 1.03451 1.01309 1.86048 1.20851 1.26780 1.89762 1.18764 0.91938 0.84142 1.02331 1.21185 1.00043 0.91505 1.03821 1.21026 0.92126 0.99080 1.01648 1.17749 0.92187 0.84490 0.97977 1.20064 0.96111 0.91707 1.10003 1.20054 0.90999 0.97323 1.00740 1.18327 0.86691 0.89135 0.74613 1.90633 1.63402 1.40888 1.45503 1.20026 0.96680 0.92360 1.22504 1.20119 0.82172 0.96249 0.89311 1.44175 1.04546 1.07153 1.61326 1.22541 0.96728 0.81948 0.99378 1.19333 0.96201 0.94497 0.86334 1.20555 1.14693 1.01080 1.15686 0.91521 1.24983 0.96147 0.97198 0.94894 1.69540 1.33407 1.36387 1.13926 0.86364 0.79223 0.82434 0.78807 1.20390 1.20932 1.19719 1.23142 0.98195 0.97231 1.05602 1.23035 0.92660 1.04670 1.04565 1.21054 0.97532 0.91576 1.03956 1.21493 0.93526 0.99405 1.00567 1.21617 0.99361 0.95024 0.99919 1.19801 0.89823 0.96564 1.01292 0.92818 0.88644 0.92778 0.85006 0.82359 0.84391 0.83836 0.89969 0.92146 0.90447 0.90964 0.90866 0.90481 0.87405 0.89426 0.91267 0.91000 0.91632 0.91806 0.92010 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.70 10.49 -19.62 -0.21 -4.91 16 3 C 0.07 1.20 6.68 -39.23 -0.26 0.94 16 4 C -0.15 -2.30 9.01 -39.40 -0.35 -2.65 16 5 C -0.12 -2.11 7.44 -39.43 -0.29 -2.40 16 6 C 0.18 3.36 5.11 -84.16 -0.43 2.93 16 7 C -0.17 -3.35 5.88 -105.02 -0.62 -3.97 16 8 C -0.07 -1.30 9.59 -39.16 -0.38 -1.67 16 9 C 0.42 8.42 6.92 -34.56 -0.24 8.18 16 10 O -0.52 -11.28 16.40 4.90 0.08 -11.20 16 11 C -0.31 -5.46 5.74 -104.44 -0.60 -6.06 16 12 C 0.23 3.97 4.74 -81.64 -0.39 3.58 16 13 N -0.48 -8.87 1.98 -109.83 -0.22 -9.09 16 14 C 0.11 2.22 3.75 -4.04 -0.02 2.20 16 15 C 0.04 0.79 2.03 -155.66 -0.32 0.47 16 16 C -0.48 -11.26 9.03 -34.44 -0.31 -11.57 16 17 H 0.07 1.58 7.82 -52.48 -0.41 1.17 16 18 C 0.07 1.62 5.39 -17.82 -0.10 1.52 16 19 N -0.89 -20.72 10.48 55.43 0.58 -20.14 16 20 Si 0.90 18.57 29.54 -169.99 -5.02 13.54 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.20 -4.26 9.33 -26.73 -0.25 -4.51 16 25 C -0.21 -4.19 8.33 -26.73 -0.22 -4.42 16 26 C -0.10 -1.50 3.86 -27.94 -0.11 -1.61 16 27 C -0.11 -1.36 5.99 -26.74 -0.16 -1.52 16 28 C -0.12 -1.47 6.01 -26.70 -0.16 -1.63 16 29 C -0.04 -0.56 5.28 -28.06 -0.15 -0.71 16 30 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 33 H 0.13 1.72 6.26 -52.49 -0.33 1.39 16 34 H 0.16 3.03 6.12 -52.49 -0.32 2.70 16 35 H 0.14 2.45 7.79 -52.49 -0.41 2.04 16 36 H 0.14 3.04 3.83 -51.92 -0.20 2.85 16 37 H 0.08 1.59 6.23 -51.93 -0.32 1.27 16 38 H 0.27 6.01 8.32 -40.82 -0.34 5.67 16 39 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 40 H 0.07 1.50 4.91 -51.93 -0.25 1.25 16 41 H 0.07 1.41 5.31 -51.93 -0.28 1.13 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.11 1.72 5.09 -51.93 -0.26 1.45 16 44 H 0.09 1.17 8.01 -51.93 -0.42 0.76 16 45 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -26.34 377.95 -10.36 -36.69 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.91 Total: 11.01 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -4.35 Total: -21.61 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.36 Total: -29.23 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.13 Total: -16.11 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.34 -10.36 -36.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596299455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.579 kcal (2) G-P(sol) polarization free energy of solvation -26.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds