Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35858 * 125.64446 * 2 1 4 4 C 1.35933 * 108.76459 * 180.14809 * 3 2 1 5 5 N 1.40643 * 126.12333 * 179.89368 * 4 3 2 6 6 C 1.34780 * 119.99576 * 190.21428 * 5 4 3 7 7 O 1.21688 * 120.00105 * 5.30163 * 6 5 4 8 8 C 1.46881 * 119.99699 * 185.29961 * 6 5 4 9 9 C 1.36123 * 125.43470 * 186.51865 * 8 6 5 10 10 C 1.41701 * 107.74672 * 180.25607 * 9 8 6 11 11 C 1.40019 * 133.35093 * 179.78111 * 10 9 8 12 12 C 1.36583 * 119.83459 * 180.02562 * 11 10 9 13 13 C 1.38852 * 120.59635 * 359.96211 * 12 11 10 14 14 C 1.37852 * 120.63497 * 359.97438 * 13 12 11 15 15 C 1.39084 * 119.80801 * 0.02562 * 14 13 12 16 16 N 1.37849 * 133.15735 * 180.02562 * 15 14 13 17 17 C 1.36900 * 125.62188 * 0.02562 * 16 15 14 18 18 H 1.08004 * 120.00045 * 226.67894 * 17 16 15 19 19 C 1.39012 * 119.99942 * 46.68116 * 17 16 15 20 20 N 1.31350 * 119.99804 * 196.77038 * 19 17 16 21 21 Si 1.86800 * 119.99882 * 16.76832 * 19 17 16 22 22 H 1.48502 * 109.47110 * 264.31194 * 21 19 17 23 23 H 1.48501 * 109.47138 * 24.31626 * 21 19 17 24 24 H 1.48500 * 109.47097 * 144.31414 * 21 19 17 25 25 C 1.40220 * 107.74531 * 359.62480 * 4 3 2 26 26 C 1.37619 * 125.64636 * 179.73363 * 2 1 3 27 27 C 1.46661 * 126.16371 * 359.97438 * 26 2 1 28 28 N 1.34777 * 119.99758 * 184.87171 * 27 26 2 29 29 O 1.21700 * 119.99679 * 4.86936 * 27 26 2 30 30 H 1.08992 * 109.47337 * 269.55853 * 1 2 3 31 31 H 1.08996 * 109.47049 * 29.56787 * 1 2 3 32 32 H 1.09007 * 109.46947 * 149.56071 * 1 2 3 33 33 H 1.08001 * 125.61353 * 0.02562 * 3 2 1 34 34 H 0.96997 * 120.00333 * 10.21508 * 5 4 3 35 35 H 1.08006 * 126.12667 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.08634 * 0.02562 * 11 10 9 37 37 H 1.07996 * 119.70308 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.68603 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.09495 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99608 * 179.97438 * 20 19 17 41 41 H 1.07997 * 126.44975 * 180.24280 * 25 4 3 42 42 H 0.97002 * 119.99917 * 5.11089 * 28 27 26 43 43 H 0.96994 * 119.99738 * 185.10093 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2567 1.1040 0.0000 4 6 3.5574 0.7093 -0.0033 5 7 4.6807 1.5557 -0.0065 6 6 5.9096 1.0436 -0.2166 7 8 6.0384 -0.1330 -0.4989 8 6 7.0934 1.9059 -0.1048 9 6 8.3678 1.5407 -0.4139 10 6 9.2089 2.6530 -0.1622 11 6 10.5874 2.8637 -0.2884 12 6 11.1224 4.0764 0.0411 13 6 10.3112 5.1055 0.5004 14 6 8.9512 4.9225 0.6318 15 6 8.3835 3.6963 0.3024 16 7 7.0904 3.2193 0.3256 17 6 5.9862 3.9274 0.7174 18 1 5.2711 3.4823 1.3935 19 6 5.7853 5.2192 0.2450 20 7 4.9343 6.0152 0.8512 21 14 6.7257 5.8231 -1.2518 22 1 7.9326 6.5676 -0.8110 23 1 7.1360 4.6611 -2.0806 24 1 5.8559 6.7206 -2.0539 25 6 3.5786 -0.6927 0.0033 26 6 2.2670 -1.1183 0.0052 27 6 1.8091 -2.5116 0.0122 28 7 2.7037 -3.5143 0.1159 29 8 0.6215 -2.7623 -0.0756 30 1 -0.3633 -0.0079 1.0275 31 1 -0.3633 0.8938 -0.5071 32 1 -0.3633 -0.8861 -0.5207 33 1 1.9096 2.1268 0.0004 34 1 4.5710 2.5079 0.1425 35 1 8.6822 0.5747 -0.7805 36 1 11.2261 2.0692 -0.6453 37 1 12.1859 4.2364 -0.0567 38 1 10.7497 6.0586 0.7563 39 1 8.3284 5.7291 0.9895 40 1 4.7944 6.9168 0.5217 41 1 4.4569 -1.3211 0.0064 42 1 3.6418 -3.3143 0.2604 43 1 2.4094 -4.4359 0.0463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609202290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = 47.095809 kcal Electronic energy + Delta-G solvation = -30392.585185 eV Core-core repulsion = 26211.374495 eV Total energy + Delta-G solvation = -4181.210690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41733 -40.83736 -39.02728 -38.38165 -36.27094 -34.61319 -33.92586 -33.58481 -31.73154 -31.46535 -29.43377 -28.91658 -28.29097 -26.10945 -25.02600 -23.74400 -22.93106 -21.25478 -20.97070 -19.99679 -19.70641 -19.06291 -18.53835 -17.90048 -16.77766 -16.55881 -15.95406 -15.70975 -15.55622 -15.38992 -14.99676 -14.74433 -14.35819 -14.23979 -14.19395 -13.87969 -13.60218 -13.38468 -13.22488 -13.11613 -12.89540 -12.36426 -12.34485 -12.28226 -12.13634 -12.09429 -11.51795 -11.09471 -11.06960 -10.60865 -10.39898 -10.23851 -10.10373 -10.00546 -9.80260 -9.58272 -9.48983 -8.82930 -8.29577 -7.54492 -7.36019 -7.10611 -6.99524 -4.86249 1.44641 1.51465 2.38153 2.54589 2.70885 2.87945 2.99729 3.12451 3.14413 3.46820 3.50605 3.76892 3.85017 4.02312 4.10688 4.48494 4.66427 4.84374 4.92679 5.14138 5.23912 5.42638 5.51447 5.56267 5.61563 5.62852 5.80858 5.83960 6.09761 6.14910 6.20568 6.32817 6.50509 6.54627 6.66601 6.67085 6.74826 6.87749 7.05141 7.14538 7.20163 7.25536 7.30129 7.35495 7.47017 7.53935 7.61033 7.97149 8.11354 8.18027 8.47227 8.76802 8.89654 9.93343 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.003149 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.147644 B = 8889.262821 C =10408.001678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.407 5.407 3 C -0.014 4.014 4 C 0.074 3.926 5 N -0.644 5.644 6 C 0.598 3.402 7 O -0.541 6.541 8 C -0.010 4.010 9 C -0.154 4.154 10 C -0.126 4.126 11 C -0.075 4.075 12 C -0.160 4.160 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.068 3.932 16 N -0.278 5.278 17 C -0.380 4.380 18 H 0.124 0.876 19 C 0.089 3.911 20 N -0.821 5.821 21 Si 0.871 3.129 22 H -0.247 1.247 23 H -0.252 1.252 24 H -0.280 1.280 25 C -0.131 4.131 26 C -0.061 4.061 27 C 0.601 3.399 28 N -0.843 5.843 29 O -0.561 6.561 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.174 0.826 34 H 0.428 0.572 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.289 0.711 41 H 0.165 0.835 42 H 0.408 0.592 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -6.686 -1.332 7.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.081 5.081 3 C -0.150 4.150 4 C -0.027 4.027 5 N -0.296 5.296 6 C 0.388 3.612 7 O -0.419 6.419 8 C -0.124 4.124 9 C -0.181 4.181 10 C -0.131 4.131 11 C -0.093 4.093 12 C -0.179 4.179 13 C -0.147 4.147 14 C -0.125 4.125 15 C -0.045 4.045 16 N 0.056 4.944 17 C -0.506 4.506 18 H 0.141 0.859 19 C -0.127 4.127 20 N -0.449 5.449 21 Si 0.695 3.305 22 H -0.171 1.171 23 H -0.175 1.175 24 H -0.206 1.206 25 C -0.161 4.161 26 C -0.175 4.175 27 C 0.389 3.611 28 N -0.406 5.406 29 O -0.442 6.442 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.191 0.809 34 H 0.275 0.725 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.182 0.818 42 H 0.238 0.762 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.297 -7.073 -1.431 7.934 hybrid contribution 0.553 0.951 -0.443 1.186 sum -2.744 -6.122 -1.875 6.966 Atomic orbital electron populations 1.22226 0.76002 1.05077 1.03712 1.43441 1.06392 1.04375 1.53920 1.21443 0.88912 0.91845 1.12844 1.16984 0.86517 0.90778 1.08384 1.43818 1.03655 1.12610 1.69480 1.17164 0.81699 0.86309 0.76009 1.90650 1.86222 1.16023 1.49003 1.20103 0.94561 0.87543 1.10220 1.20477 0.90330 0.98687 1.08599 1.18018 0.93339 0.94155 1.07620 1.20191 0.92655 0.96792 0.99703 1.20377 0.98761 0.93941 1.04842 1.20618 0.92615 0.98746 1.02689 1.20181 0.94899 0.95030 1.02373 1.18478 0.84494 0.95712 1.05832 1.40264 1.04319 1.07794 1.42023 1.19242 1.02023 0.98384 1.30959 0.85916 1.25491 0.95164 0.95015 0.97003 1.69677 1.31422 1.07432 1.36337 0.86851 0.80402 0.80954 0.82326 1.17138 1.17526 1.20579 1.21595 0.94813 0.93907 1.05744 1.19852 0.90058 0.87522 1.20078 1.16920 0.85199 0.84040 0.74956 1.43459 1.12009 1.08792 1.76324 1.90787 1.16265 1.85167 1.51968 0.90870 0.89961 0.87968 0.80883 0.72516 0.84206 0.87004 0.87172 0.86899 0.86375 0.90017 0.81782 0.76248 0.76325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.61 59.84 0.64 1.41 16 2 N -0.41 -5.77 3.17 -120.02 -0.38 -6.15 16 3 C -0.01 -0.20 11.42 -16.60 -0.19 -0.39 16 4 C 0.07 1.29 6.86 -83.89 -0.58 0.71 16 5 N -0.64 -12.51 5.27 -11.15 -0.06 -12.57 16 6 C 0.60 12.58 7.72 -12.76 -0.10 12.48 16 7 O -0.54 -11.47 14.21 5.20 0.07 -11.39 16 8 C -0.01 -0.22 6.76 -82.25 -0.56 -0.78 16 9 C -0.15 -3.19 10.55 -39.02 -0.41 -3.60 16 10 C -0.13 -2.64 6.16 -106.90 -0.66 -3.29 16 11 C -0.07 -1.33 10.06 -39.51 -0.40 -1.72 16 12 C -0.16 -2.67 9.97 -39.95 -0.40 -3.06 16 13 C -0.13 -2.26 10.02 -39.50 -0.40 -2.66 16 14 C -0.11 -2.20 7.00 -39.41 -0.28 -2.47 16 15 C 0.07 1.54 5.13 -83.83 -0.43 1.11 16 16 N -0.28 -6.41 2.34 -56.08 -0.13 -6.54 16 17 C -0.38 -8.90 7.91 -15.00 -0.12 -9.02 16 18 H 0.12 2.94 6.89 -52.48 -0.36 2.58 16 19 C 0.09 2.08 4.99 -17.47 -0.09 1.99 16 20 N -0.82 -19.51 13.95 55.50 0.77 -18.74 16 21 Si 0.87 18.96 24.40 -169.99 -4.15 14.81 16 22 H -0.25 -5.18 5.90 56.52 0.33 -4.85 16 23 H -0.25 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 C -0.13 -2.16 9.09 -38.96 -0.35 -2.51 16 26 C -0.06 -0.92 6.88 -81.99 -0.56 -1.49 16 27 C 0.60 8.32 8.05 -12.86 -0.10 8.22 16 28 N -0.84 -8.29 8.85 30.26 0.27 -8.02 16 29 O -0.56 -8.94 15.48 5.19 0.08 -8.86 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.21 6.25 -51.93 -0.32 0.88 16 33 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.43 8.51 5.00 -40.82 -0.20 8.31 16 35 H 0.14 2.60 8.06 -52.48 -0.42 2.18 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.12 2.51 6.23 -52.49 -0.33 2.19 16 40 H 0.29 6.38 8.31 -40.82 -0.34 6.04 16 41 H 0.16 2.67 5.63 -52.49 -0.30 2.37 16 42 H 0.41 3.49 7.76 -40.82 -0.32 3.18 16 43 H 0.41 3.09 8.93 -40.82 -0.36 2.73 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -29.18 358.56 -7.46 -36.63 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -4.36 Total: 20.49 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.98 Total: -5.08 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.47 Total: -52.02 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.15 Total: -20.25 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.15 Total: 14.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.18 -7.46 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609202290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.731 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds