Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35972 * 117.00129 * 2 1 4 4 C 1.38723 * 119.98626 * 180.02562 * 3 2 1 5 5 C 1.38092 * 120.01500 * 180.25763 * 4 3 2 6 6 C 1.38843 * 119.98600 * 359.51510 * 5 4 3 7 7 N 1.40117 * 120.01910 * 180.23122 * 6 5 4 8 8 C 1.34779 * 119.99697 * 331.08520 * 7 6 5 9 9 O 1.21560 * 120.00238 * 4.58539 * 8 7 6 10 10 N 1.34779 * 119.99693 * 184.58766 * 8 7 6 11 11 C 1.46506 * 119.99781 * 187.26425 * 10 8 7 12 12 C 1.50700 * 109.47088 * 89.99867 * 11 10 8 13 13 C 1.38233 * 120.00134 * 269.72640 * 12 11 10 14 14 C 1.38235 * 120.00015 * 179.76609 * 13 12 11 15 15 C 1.38234 * 119.99809 * 0.51138 * 14 13 12 16 16 C 1.38231 * 120.00008 * 359.73919 * 15 14 13 17 17 C 1.38236 * 120.00458 * 0.02562 * 16 15 14 18 18 C 1.34776 * 120.00220 * 7.26160 * 10 8 7 19 19 O 1.21662 * 119.99561 * 359.68503 * 18 10 8 20 20 C 1.46232 * 120.00065 * 179.67657 * 18 10 8 21 21 H 1.08004 * 120.00391 * 329.18729 * 20 18 10 22 22 C 1.40124 * 119.99963 * 149.18367 * 20 18 10 23 23 N 1.30639 * 120.00286 * 159.86463 * 22 20 18 24 24 Si 1.86803 * 119.99666 * 339.86150 * 22 20 18 25 25 H 1.48497 * 109.46984 * 84.26172 * 24 22 20 26 26 H 1.48508 * 109.46687 * 204.25549 * 24 22 20 27 27 H 1.48494 * 109.47417 * 324.25410 * 24 22 20 28 28 C 1.38846 * 119.96666 * 0.50588 * 6 5 4 29 29 C 1.38088 * 119.98633 * 359.72891 * 28 6 5 30 30 H 1.09003 * 109.46997 * 299.99406 * 1 2 3 31 31 H 1.08993 * 109.47524 * 59.99443 * 1 2 3 32 32 H 1.09002 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.08009 * 119.99016 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.00488 * 179.72470 * 5 4 3 35 35 H 0.96997 * 119.99790 * 151.07820 * 7 6 5 36 36 H 1.09001 * 109.46902 * 210.00477 * 11 10 8 37 37 H 1.09000 * 109.46707 * 329.99823 * 11 10 8 38 38 H 1.08001 * 119.99918 * 359.97438 * 13 12 11 39 39 H 1.07996 * 119.99696 * 180.22394 * 14 13 12 40 40 H 1.07994 * 120.00030 * 179.72296 * 15 14 13 41 41 H 1.08007 * 120.00118 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.00655 * 179.97438 * 17 16 15 43 43 H 0.96996 * 120.00048 * 185.00636 * 23 22 20 44 44 H 1.08000 * 120.00819 * 179.70010 * 28 6 5 45 45 H 1.08011 * 119.99299 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0592 2.5138 0.0048 6 6 3.3034 3.6785 0.0006 7 7 3.9394 4.9269 0.0012 8 6 5.1537 5.0643 0.5696 9 8 5.7336 4.0898 1.0075 10 7 5.7251 6.2822 0.6526 11 6 7.1063 6.4127 1.1231 12 6 8.0471 6.3294 -0.0512 13 6 8.5486 5.1043 -0.4495 14 6 9.4077 5.0273 -1.5297 15 6 9.7735 6.1766 -2.2051 16 6 9.2761 7.4022 -1.8037 17 6 8.4131 7.4787 -0.7264 18 6 5.0257 7.3799 0.3027 19 8 3.8806 7.2708 -0.0935 20 6 5.6433 8.7019 0.3995 21 1 6.3888 8.8956 1.1565 22 6 5.2678 9.7174 -0.4900 23 7 5.4954 10.9677 -0.1876 24 14 4.4418 9.2831 -2.1082 25 1 2.9833 9.1102 -1.8888 26 1 4.6688 10.3754 -3.0885 27 1 5.0167 8.0189 -2.6339 28 6 1.9168 3.6054 0.0016 29 6 1.2905 2.3747 0.0011 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0195 0.3776 -0.0005 34 1 5.1378 2.5698 0.0089 35 1 3.5059 5.6923 -0.4077 36 1 7.2311 7.3742 1.6212 37 1 7.3287 5.6086 1.8246 38 1 8.2666 4.2070 0.0813 39 1 9.7966 4.0698 -1.8431 40 1 10.4482 6.1170 -3.0463 41 1 9.5622 8.3002 -2.3311 42 1 8.0248 8.4363 -0.4125 43 1 5.1711 11.6739 -0.7682 44 1 1.3282 4.5109 0.0032 45 1 0.2119 2.3178 0.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000170876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = -29.344758 kcal Electronic energy + Delta-G solvation = -31359.237800 eV Core-core repulsion = 27115.108169 eV Total energy + Delta-G solvation = -4244.129631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91946 -39.83517 -38.71747 -37.89900 -36.94889 -34.71914 -33.69988 -33.22763 -31.10157 -30.88072 -30.48044 -28.90779 -27.52189 -26.92468 -25.73338 -22.80576 -22.63369 -22.12325 -21.60610 -20.97929 -19.50360 -18.05591 -17.67034 -17.31865 -16.84875 -16.40600 -16.02282 -15.72296 -15.68516 -15.15586 -14.76352 -14.58010 -14.48438 -14.36975 -14.12317 -13.59153 -13.39985 -13.02014 -13.00570 -12.84337 -12.60224 -12.57608 -12.52196 -12.36544 -12.11600 -11.95750 -11.61008 -11.37909 -11.26179 -10.98907 -10.84375 -10.77180 -10.54436 -10.07904 -9.81338 -9.45773 -9.34207 -8.82266 -8.75564 -8.59010 -8.50174 -8.35645 -7.33413 -7.04121 -5.22972 1.54789 1.58848 1.67900 1.82647 2.88623 3.07295 3.22166 3.26842 3.27725 3.39245 3.86000 4.01446 4.11909 4.21502 4.58296 4.88146 4.89388 5.03388 5.06309 5.11518 5.23729 5.24876 5.34656 5.36515 5.52417 5.56393 5.61153 5.70338 5.87497 5.93891 6.04284 6.12808 6.16047 6.20745 6.31653 6.38028 6.47738 6.49489 6.65905 6.81525 6.83128 6.91600 6.98333 7.14068 7.22192 7.28919 7.41721 7.53944 7.70746 8.03649 8.37484 8.49570 9.03520 9.33952 9.93974 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.003565 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.943723 B = 7851.576430 C = 9564.912781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.091 3.909 4 C -0.131 4.131 5 C -0.098 4.098 6 C 0.139 3.861 7 N -0.666 5.666 8 C 0.704 3.296 9 O -0.583 6.583 10 N -0.568 5.568 11 C 0.162 3.838 12 C -0.101 4.101 13 C -0.100 4.100 14 C -0.135 4.135 15 C -0.122 4.122 16 C -0.132 4.132 17 C -0.086 4.086 18 C 0.546 3.454 19 O -0.590 6.590 20 C -0.523 4.523 21 H 0.104 0.896 22 C 0.120 3.880 23 N -0.797 5.797 24 Si 0.917 3.083 25 H -0.259 1.259 26 H -0.293 1.293 27 H -0.264 1.264 28 C -0.115 4.115 29 C -0.186 4.186 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.156 0.844 35 H 0.424 0.576 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.290 0.710 44 H 0.127 0.873 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -10.928 -2.009 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.046 3.954 4 C -0.151 4.151 5 C -0.118 4.118 6 C 0.042 3.958 7 N -0.336 5.336 8 C 0.408 3.592 9 O -0.462 6.462 10 N -0.310 5.310 11 C 0.039 3.961 12 C -0.102 4.102 13 C -0.119 4.119 14 C -0.153 4.153 15 C -0.140 4.140 16 C -0.150 4.150 17 C -0.104 4.104 18 C 0.360 3.640 19 O -0.480 6.480 20 C -0.557 4.557 21 H 0.122 0.878 22 C -0.103 4.103 23 N -0.425 5.425 24 Si 0.743 3.257 25 H -0.184 1.184 26 H -0.220 1.220 27 H -0.188 1.188 28 C -0.136 4.136 29 C -0.205 4.205 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.174 0.826 35 H 0.285 0.715 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.145 0.855 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.600 -11.436 -1.933 11.614 hybrid contribution -0.820 0.458 -0.885 1.291 sum -1.420 -10.978 -2.818 11.422 Atomic orbital electron populations 1.22972 0.79078 1.03380 1.01193 1.86044 1.20814 1.27229 1.89527 1.18950 0.92339 0.83858 1.00250 1.20330 0.91000 0.98282 1.05453 1.21495 1.01992 0.89764 0.98593 1.17815 0.91306 0.85824 1.00857 1.44867 1.18742 1.12209 1.57732 1.16424 0.81062 0.83673 0.78024 1.90737 1.64365 1.37380 1.53728 1.46409 1.14654 1.05719 1.64170 1.20394 0.77569 1.04424 0.93668 1.20169 0.98043 0.93419 0.98586 1.21193 0.96441 0.97512 0.96714 1.21036 0.99481 0.98029 0.96790 1.21095 1.00261 0.92998 0.99671 1.21163 0.98580 0.97478 0.97795 1.21535 0.95002 0.99577 0.94308 1.18669 0.84683 0.84710 0.75923 1.89876 1.19316 1.83918 1.54844 1.20514 1.25731 0.90780 1.18707 0.87803 1.25567 0.91427 0.93670 0.99643 1.69505 1.35321 1.00411 1.37222 0.86091 0.81733 0.78164 0.79712 1.18368 1.22016 1.18793 1.20668 0.92691 0.97750 1.02492 1.20911 0.99521 0.91672 1.08445 0.92901 0.92904 0.88695 0.85370 0.82623 0.71535 0.87698 0.89161 0.85815 0.86692 0.86801 0.86400 0.83992 0.89939 0.85457 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.23 10.50 -19.65 -0.21 -4.43 16 3 C 0.09 1.34 6.69 -39.23 -0.26 1.08 16 4 C -0.13 -2.03 9.98 -39.46 -0.39 -2.43 16 5 C -0.10 -1.72 8.75 -39.41 -0.34 -2.07 16 6 C 0.14 2.57 6.41 -83.62 -0.54 2.04 16 7 N -0.67 -13.81 5.08 -14.20 -0.07 -13.88 16 8 C 0.70 15.09 8.07 -86.91 -0.70 14.39 16 9 O -0.58 -12.41 12.87 5.31 0.07 -12.34 16 10 N -0.57 -12.05 2.55 -123.61 -0.32 -12.37 16 11 C 0.16 2.94 5.15 -5.19 -0.03 2.91 16 12 C -0.10 -1.79 5.46 -104.62 -0.57 -2.36 16 13 C -0.10 -1.65 9.70 -39.58 -0.38 -2.03 16 14 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 15 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 16 C -0.13 -2.07 10.05 -39.58 -0.40 -2.46 16 17 C -0.09 -1.51 9.35 -39.58 -0.37 -1.88 16 18 C 0.55 12.87 6.67 -13.05 -0.09 12.78 16 19 O -0.59 -14.69 11.06 5.22 0.06 -14.63 16 20 C -0.52 -12.49 7.22 -35.67 -0.26 -12.75 16 21 H 0.10 2.44 6.41 -52.48 -0.34 2.11 16 22 C 0.12 2.90 5.48 -17.35 -0.10 2.81 16 23 N -0.80 -19.46 13.91 55.55 0.77 -18.69 16 24 Si 0.92 20.85 26.41 -169.99 -4.49 16.36 16 25 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 28 C -0.11 -1.85 9.95 -39.41 -0.39 -2.25 16 29 C -0.19 -2.62 9.03 -39.46 -0.36 -2.98 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 34 H 0.16 2.89 5.74 -52.48 -0.30 2.59 16 35 H 0.42 9.25 5.04 -44.19 -0.22 9.03 16 36 H 0.10 1.83 6.00 -51.93 -0.31 1.52 16 37 H 0.09 1.54 7.28 -51.93 -0.38 1.16 16 38 H 0.12 2.02 7.97 -52.49 -0.42 1.60 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 42 H 0.14 2.66 6.50 -52.49 -0.34 2.31 16 43 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 44 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.13 1.41 6.29 -52.48 -0.33 1.08 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -27.95 374.83 -8.62 -36.57 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.11 Total: 16.26 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -4.98 Total: 1.51 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.39 Total: -44.94 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.08 Total: -31.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.49 Total: 16.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.95 -8.62 -36.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000170876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.222 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds