Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99807 * 2 1 4 4 C 1.37940 * 119.98437 * 359.72545 * 3 2 1 5 5 C 1.40215 * 119.82369 * 179.79707 * 4 3 2 6 6 C 1.46694 * 120.10314 * 180.25669 * 5 4 3 7 7 N 1.30738 * 119.99995 * 180.22905 * 6 5 4 8 8 N 1.40095 * 119.99957 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99730 * 179.97438 * 8 7 6 10 10 O 1.21988 * 120.00122 * 359.97438 * 9 8 7 11 11 C 1.40583 * 119.99884 * 179.97438 * 9 8 7 12 12 H 1.08005 * 119.99988 * 0.02562 * 11 9 8 13 13 C 1.40193 * 120.00176 * 179.97438 * 11 9 8 14 14 N 1.30615 * 119.99503 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00321 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47084 * 89.99855 * 15 13 11 17 17 H 1.48497 * 109.47144 * 210.00131 * 15 13 11 18 18 H 1.48504 * 109.46772 * 330.00243 * 15 13 11 19 19 C 1.40356 * 119.79224 * 0.47571 * 5 4 3 20 20 C 1.37579 * 119.96566 * 359.75361 * 19 5 4 21 21 C 1.39089 * 120.17986 * 0.02562 * 20 19 5 22 22 O 1.35730 * 119.89513 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00312 * 359.97438 * 22 21 20 24 24 C 1.50703 * 109.47263 * 180.02562 * 23 22 21 25 25 C 1.38238 * 119.99536 * 269.72265 * 24 23 22 26 26 C 1.38234 * 119.99799 * 179.76610 * 25 24 23 27 27 C 1.38235 * 120.00008 * 0.50449 * 26 25 24 28 28 C 1.38236 * 119.99979 * 359.75247 * 27 26 25 29 29 C 1.38234 * 120.00350 * 89.99798 * 24 23 22 30 30 H 1.09002 * 109.47382 * 59.99931 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99917 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.09081 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.00269 * 0.21511 * 6 5 4 35 35 H 0.96994 * 120.00340 * 359.97438 * 8 7 6 36 36 H 0.97002 * 119.99535 * 180.02562 * 14 13 11 37 37 H 1.07995 * 120.01095 * 179.73156 * 19 5 4 38 38 H 1.08001 * 119.90895 * 179.97438 * 20 19 5 39 39 H 1.09003 * 109.47060 * 299.99647 * 23 22 21 40 40 H 1.08994 * 109.47507 * 59.99647 * 23 22 21 41 41 H 1.08002 * 119.99910 * 359.97438 * 25 24 23 42 42 H 1.08005 * 119.99888 * 180.23047 * 26 25 24 43 43 H 1.07998 * 120.00201 * 179.72363 * 27 26 25 44 44 H 1.07999 * 120.00128 * 179.97438 * 28 27 26 45 45 H 1.08001 * 119.99626 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2946 2.3680 -0.0057 5 6 1.9346 3.6156 -0.0014 6 6 1.1413 4.8495 -0.0018 7 7 1.7401 6.0117 -0.0022 8 7 0.9825 7.1901 -0.0031 9 6 1.5999 8.3882 -0.0031 10 8 2.8183 8.4464 -0.0018 11 6 0.8396 9.5707 -0.0045 12 1 -0.2392 9.5191 -0.0052 13 6 1.4817 10.8169 -0.0040 14 7 2.7864 10.8792 -0.0026 15 14 0.4716 12.3882 -0.0052 16 1 0.2024 12.8047 1.3946 17 1 1.2245 13.4602 -0.7045 18 1 -0.8153 12.1487 -0.7065 19 6 3.3367 3.6801 -0.0014 20 6 4.0779 2.5211 -0.0005 21 6 3.4417 1.2842 -0.0001 22 8 4.1787 0.1444 0.0003 23 6 5.6001 0.2909 -0.0003 24 6 6.2455 -1.0710 -0.0004 25 6 6.5471 -1.6929 1.1967 26 6 7.1346 -2.9442 1.1967 27 6 7.4300 -3.5691 -0.0004 28 6 7.1332 -2.9448 -1.1976 29 6 6.5410 -1.6958 -1.1976 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2161 2.3129 -0.0098 34 1 0.0625 4.7980 -0.0018 35 1 0.0136 7.1438 -0.0038 36 1 3.2307 11.7415 -0.0019 37 1 3.8333 4.6391 -0.0024 38 1 5.1567 2.5718 -0.0009 39 1 5.9086 0.8387 -0.8908 40 1 5.9092 0.8397 0.8892 41 1 6.3207 -1.2026 2.1320 42 1 7.3669 -3.4317 2.1321 43 1 7.8931 -4.5447 -0.0005 44 1 7.3644 -3.4328 -2.1329 45 1 6.3089 -1.2081 -2.1329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000267346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -14.006113 kcal Electronic energy + Delta-G solvation = -28637.235165 eV Core-core repulsion = 24393.770668 eV Total energy + Delta-G solvation = -4243.464498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.55596 -39.56818 -38.32440 -37.76836 -36.95103 -34.93314 -32.73629 -32.49442 -31.29374 -31.21571 -30.29684 -29.15007 -27.30353 -26.79529 -26.22786 -23.38256 -22.90057 -22.54412 -21.28309 -20.70114 -19.75530 -18.51111 -17.71030 -17.33841 -16.83328 -16.56677 -16.29206 -15.65914 -15.63360 -15.51606 -15.41531 -14.69660 -14.63095 -14.53902 -14.18616 -13.86885 -13.71069 -13.33252 -13.20416 -13.09311 -12.71653 -12.63835 -12.47202 -12.17163 -11.66941 -11.57605 -11.43712 -11.42264 -11.27237 -11.15529 -11.09442 -11.07061 -10.67798 -10.49169 -10.40087 -9.54066 -9.22639 -9.16958 -9.05939 -8.74208 -8.08200 -7.79866 -7.10644 -6.42820 -4.98490 0.91209 1.07747 1.09960 1.49143 2.82757 3.03874 3.05173 3.08918 3.13012 3.23661 3.67410 3.69391 3.99560 4.06412 4.41974 4.42045 4.49078 4.68437 4.79293 4.85633 4.92776 4.93441 4.97486 5.08180 5.12012 5.17301 5.25247 5.32674 5.36370 5.41007 5.44242 5.63483 5.66054 5.72355 5.73279 5.91190 6.11814 6.13622 6.18609 6.26715 6.38511 6.59919 6.65790 6.75398 6.83830 7.03857 7.17873 7.58739 7.80448 7.95391 8.63584 8.73356 9.26006 10.36051 10.61114 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.001657 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.300824 B =16889.825247 C =18214.330992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.096 3.904 4 C -0.160 4.160 5 C -0.016 4.016 6 C 0.016 3.984 7 N -0.184 5.184 8 N -0.587 5.587 9 C 0.557 3.443 10 O -0.553 6.553 11 C -0.536 4.536 12 H 0.071 0.929 13 C 0.088 3.912 14 N -0.743 5.743 15 Si 0.917 3.083 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.084 4.084 20 C -0.173 4.173 21 C 0.095 3.905 22 O -0.299 6.299 23 C 0.098 3.902 24 C -0.090 4.090 25 C -0.095 4.095 26 C -0.125 4.125 27 C -0.113 4.113 28 C -0.125 4.125 29 C -0.095 4.095 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.369 0.631 36 H 0.275 0.725 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -26.276 0.003 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.050 3.950 4 C -0.182 4.182 5 C -0.018 4.018 6 C -0.193 4.193 7 N 0.006 4.994 8 N -0.333 5.333 9 C 0.366 3.634 10 O -0.433 6.433 11 C -0.573 4.573 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.371 5.371 15 Si 0.741 3.259 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.105 4.105 20 C -0.192 4.192 21 C 0.049 3.951 22 O -0.213 6.213 23 C 0.023 3.977 24 C -0.090 4.090 25 C -0.113 4.113 26 C -0.143 4.143 27 C -0.132 4.132 28 C -0.143 4.143 29 C -0.113 4.113 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.205 0.795 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.985 -25.801 -0.001 26.107 hybrid contribution -2.058 0.776 0.007 2.200 sum 1.927 -25.025 0.006 25.099 Atomic orbital electron populations 1.23036 0.78904 1.03623 1.01323 1.86148 1.20722 1.25954 1.89443 1.17947 0.88798 0.84883 1.03322 1.21045 0.99685 0.90405 1.07055 1.18204 0.92531 0.90389 1.00680 1.23828 0.96583 0.90564 1.08297 1.74819 1.27079 0.93680 1.03830 1.48113 1.06888 1.02376 1.75939 1.16781 0.88458 0.79758 0.78436 1.90727 1.13795 1.84861 1.53883 1.19729 0.94387 0.89745 1.53426 0.91074 1.25770 0.94868 1.00527 0.92425 1.70018 1.08983 1.26469 1.31588 0.86207 0.80269 0.80279 0.79127 1.19403 1.20102 1.18636 1.21311 0.92866 0.98641 0.97651 1.21026 1.00293 0.90821 1.07044 1.18421 0.88008 0.85750 1.02924 1.86138 1.17537 1.28570 1.89054 1.21593 0.79237 0.94444 1.02413 1.19519 0.99930 0.95812 0.93782 1.21119 0.97499 0.95075 0.97613 1.21160 0.99537 0.95282 0.98278 1.21223 0.99468 0.99825 0.92638 1.21159 0.99506 0.95316 0.98278 1.21117 0.97479 0.95082 0.97622 0.92716 0.92722 0.88542 0.84592 0.87695 0.79545 0.91436 0.83987 0.84763 0.91018 0.91009 0.85729 0.85823 0.85988 0.85824 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.02 10.28 -34.17 -0.35 -4.37 16 3 C 0.10 1.33 6.70 -39.13 -0.26 1.06 16 4 C -0.16 -2.12 8.78 -38.95 -0.34 -2.46 16 5 C -0.02 -0.24 5.88 -104.94 -0.62 -0.86 16 6 C 0.02 0.28 10.75 -14.60 -0.16 0.12 16 7 N -0.18 -4.10 10.19 32.13 0.33 -3.77 16 8 N -0.59 -13.95 6.26 28.90 0.18 -13.77 16 9 C 0.56 16.11 7.65 -15.37 -0.12 15.99 16 10 O -0.55 -18.36 15.19 4.93 0.07 -18.28 16 11 C -0.54 -14.73 9.25 -37.96 -0.35 -15.08 16 12 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 13 C 0.09 2.36 5.50 -17.34 -0.10 2.27 16 14 N -0.74 -21.61 11.70 55.56 0.65 -20.96 16 15 Si 0.92 19.18 29.56 -169.99 -5.02 14.16 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 C -0.08 -1.34 9.58 -39.03 -0.37 -1.72 16 20 C -0.17 -2.36 9.01 -39.51 -0.36 -2.72 16 21 C 0.10 1.34 6.72 -38.70 -0.26 1.08 16 22 O -0.30 -4.00 9.89 -33.46 -0.33 -4.33 16 23 C 0.10 1.00 4.86 36.01 0.17 1.17 16 24 C -0.09 -0.89 5.51 -104.62 -0.58 -1.47 16 25 C -0.09 -0.86 9.70 -39.58 -0.38 -1.24 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 27 C -0.11 -0.84 10.05 -39.58 -0.40 -1.24 16 28 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 29 C -0.09 -0.86 9.70 -39.58 -0.38 -1.24 16 30 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.42 6.28 -52.49 -0.33 1.09 16 34 H 0.11 1.50 8.03 -52.49 -0.42 1.07 16 35 H 0.37 7.34 8.61 -182.61 -1.57 5.77 16 36 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 37 H 0.14 2.53 7.54 -52.49 -0.40 2.14 16 38 H 0.13 1.50 6.27 -52.49 -0.33 1.17 16 39 H 0.07 0.65 7.59 -51.93 -0.39 0.26 16 40 H 0.07 0.65 7.59 -51.93 -0.39 0.26 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -36.91 395.74 -9.53 -46.44 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.72 Total: 6.78 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -4.30 Total: -7.86 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 1.16 Total: -38.50 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.61 Total: -26.98 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.91 -9.53 -46.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000267346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.430 kcal (2) G-P(sol) polarization free energy of solvation -36.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds