Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99807 * 2 1 4 4 C 1.37940 * 119.98437 * 359.72545 * 3 2 1 5 5 C 1.40215 * 119.82369 * 179.79707 * 4 3 2 6 6 C 1.46694 * 120.10314 * 180.25669 * 5 4 3 7 7 N 1.30738 * 119.99995 * 180.22905 * 6 5 4 8 8 N 1.40095 * 119.99957 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99730 * 179.97438 * 8 7 6 10 10 O 1.21988 * 120.00122 * 359.97438 * 9 8 7 11 11 C 1.40583 * 119.99884 * 179.97438 * 9 8 7 12 12 H 1.08005 * 119.99988 * 0.02562 * 11 9 8 13 13 C 1.40193 * 120.00176 * 179.97438 * 11 9 8 14 14 N 1.30615 * 119.99503 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00321 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47084 * 89.99855 * 15 13 11 17 17 H 1.48497 * 109.47144 * 210.00131 * 15 13 11 18 18 H 1.48504 * 109.46772 * 330.00243 * 15 13 11 19 19 C 1.40356 * 119.79224 * 0.47571 * 5 4 3 20 20 C 1.37579 * 119.96566 * 359.75361 * 19 5 4 21 21 C 1.39089 * 120.17986 * 0.02562 * 20 19 5 22 22 O 1.35730 * 119.89513 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00312 * 359.97438 * 22 21 20 24 24 C 1.50703 * 109.47263 * 180.02562 * 23 22 21 25 25 C 1.38238 * 119.99536 * 269.72265 * 24 23 22 26 26 C 1.38234 * 119.99799 * 179.76610 * 25 24 23 27 27 C 1.38235 * 120.00008 * 0.50449 * 26 25 24 28 28 C 1.38236 * 119.99979 * 359.75247 * 27 26 25 29 29 C 1.38234 * 120.00350 * 89.99798 * 24 23 22 30 30 H 1.09002 * 109.47382 * 59.99931 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99917 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.09081 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.00269 * 0.21511 * 6 5 4 35 35 H 0.96994 * 120.00340 * 359.97438 * 8 7 6 36 36 H 0.97002 * 119.99535 * 180.02562 * 14 13 11 37 37 H 1.07995 * 120.01095 * 179.73156 * 19 5 4 38 38 H 1.08001 * 119.90895 * 179.97438 * 20 19 5 39 39 H 1.09003 * 109.47060 * 299.99647 * 23 22 21 40 40 H 1.08994 * 109.47507 * 59.99647 * 23 22 21 41 41 H 1.08002 * 119.99910 * 359.97438 * 25 24 23 42 42 H 1.08005 * 119.99888 * 180.23047 * 26 25 24 43 43 H 1.07998 * 120.00201 * 179.72363 * 27 26 25 44 44 H 1.07999 * 120.00128 * 179.97438 * 28 27 26 45 45 H 1.08001 * 119.99626 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2946 2.3680 -0.0057 5 6 1.9346 3.6156 -0.0014 6 6 1.1413 4.8495 -0.0018 7 7 1.7401 6.0117 -0.0022 8 7 0.9825 7.1901 -0.0031 9 6 1.5999 8.3882 -0.0031 10 8 2.8183 8.4464 -0.0018 11 6 0.8396 9.5707 -0.0045 12 1 -0.2392 9.5191 -0.0052 13 6 1.4817 10.8169 -0.0040 14 7 2.7864 10.8792 -0.0026 15 14 0.4716 12.3882 -0.0052 16 1 0.2024 12.8047 1.3946 17 1 1.2245 13.4602 -0.7045 18 1 -0.8153 12.1487 -0.7065 19 6 3.3367 3.6801 -0.0014 20 6 4.0779 2.5211 -0.0005 21 6 3.4417 1.2842 -0.0001 22 8 4.1787 0.1444 0.0003 23 6 5.6001 0.2909 -0.0003 24 6 6.2455 -1.0710 -0.0004 25 6 6.5471 -1.6929 1.1967 26 6 7.1346 -2.9442 1.1967 27 6 7.4300 -3.5691 -0.0004 28 6 7.1332 -2.9448 -1.1976 29 6 6.5410 -1.6958 -1.1976 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2161 2.3129 -0.0098 34 1 0.0625 4.7980 -0.0018 35 1 0.0136 7.1438 -0.0038 36 1 3.2307 11.7415 -0.0019 37 1 3.8333 4.6391 -0.0024 38 1 5.1567 2.5718 -0.0009 39 1 5.9086 0.8387 -0.8908 40 1 5.9092 0.8397 0.8892 41 1 6.3207 -1.2026 2.1320 42 1 7.3669 -3.4317 2.1321 43 1 7.8931 -4.5447 -0.0005 44 1 7.3644 -3.4328 -2.1329 45 1 6.3089 -1.2081 -2.1329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000267346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = -37.967735 kcal Electronic energy + Delta-G solvation = -28638.274219 eV Core-core repulsion = 24393.770668 eV Total energy + Delta-G solvation = -4244.503552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58453 -40.29956 -39.62508 -39.21609 -38.25929 -36.59030 -34.71974 -33.45111 -32.74279 -31.82372 -31.43861 -30.46031 -28.70510 -27.81774 -27.40122 -24.74307 -23.51565 -23.48165 -22.49891 -21.88329 -21.37874 -19.76597 -19.25083 -18.27162 -18.11729 -17.65953 -17.42103 -17.18278 -16.84080 -16.42796 -16.14896 -16.04381 -15.71357 -15.47853 -15.39743 -15.19115 -14.95508 -14.71002 -14.30047 -14.04553 -13.81914 -13.80297 -13.39527 -13.29644 -13.17140 -13.08570 -12.74059 -12.70220 -12.39272 -12.21999 -12.15761 -12.02811 -11.90582 -11.90515 -11.76644 -11.01150 -10.99772 -10.04782 -9.99545 -9.84969 -9.81800 -9.45232 -8.53785 -8.43129 -7.10370 -0.15775 0.25220 0.35290 0.47498 1.36604 1.39320 1.53044 1.58019 2.03973 2.19488 2.31214 2.39092 2.41113 2.81638 2.97617 3.61942 3.64214 3.75711 3.83316 3.85887 3.97412 4.12317 4.15398 4.25192 4.27177 4.27691 4.38856 4.43438 4.48873 4.53210 4.61240 4.70205 4.71786 4.79633 4.85781 5.02370 5.12689 5.15601 5.18497 5.32362 5.51969 5.56611 5.58111 5.58599 5.61095 5.80372 6.01587 6.05487 6.09180 6.58300 6.67203 6.93088 7.44214 8.40627 8.58116 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.001657 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.300824 B =16889.825247 C =18214.330992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.089 3.911 4 C -0.137 4.137 5 C -0.047 4.047 6 C 0.067 3.933 7 N -0.259 5.259 8 N -0.593 5.593 9 C 0.543 3.457 10 O -0.616 6.616 11 C -0.562 4.562 12 H 0.096 0.904 13 C 0.030 3.970 14 N -0.800 5.800 15 Si 1.010 2.990 16 H -0.258 1.258 17 H -0.270 1.270 18 H -0.245 1.245 19 C -0.096 4.096 20 C -0.172 4.172 21 C 0.100 3.900 22 O -0.310 6.310 23 C 0.093 3.907 24 C -0.110 4.110 25 C -0.110 4.110 26 C -0.130 4.130 27 C -0.116 4.116 28 C -0.130 4.130 29 C -0.110 4.110 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.385 0.615 36 H 0.282 0.718 37 H 0.113 0.887 38 H 0.153 0.847 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -28.424 -0.007 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.043 3.957 4 C -0.158 4.158 5 C -0.050 4.050 6 C -0.142 4.142 7 N -0.066 5.066 8 N -0.339 5.339 9 C 0.353 3.647 10 O -0.501 6.501 11 C -0.598 4.598 12 H 0.114 0.886 13 C -0.189 4.189 14 N -0.428 5.428 15 Si 0.828 3.172 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.168 1.168 19 C -0.117 4.117 20 C -0.191 4.191 21 C 0.053 3.947 22 O -0.224 6.224 23 C 0.019 3.981 24 C -0.110 4.110 25 C -0.128 4.128 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.148 4.148 29 C -0.128 4.128 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.188 0.812 34 H 0.161 0.839 35 H 0.223 0.777 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.170 0.830 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.868 -28.014 -0.011 28.076 hybrid contribution -1.381 0.923 0.012 1.661 sum 0.487 -27.091 0.001 27.095 Atomic orbital electron populations 1.23395 0.76484 1.05604 1.02515 1.86147 1.23265 1.25313 1.89211 1.18117 0.88963 0.85603 1.02971 1.21242 1.01219 0.88815 1.04493 1.18277 0.92352 0.90735 1.03600 1.24485 0.98677 0.89682 1.01372 1.74918 1.27967 0.94305 1.09458 1.47311 1.07351 1.02161 1.77072 1.17177 0.87959 0.81675 0.77885 1.90662 1.16188 1.86402 1.56891 1.20302 0.95685 0.90188 1.53591 0.88564 1.27159 0.96045 1.04882 0.90805 1.70189 1.11736 1.28050 1.32827 0.84844 0.78506 0.74148 0.79726 1.18259 1.19458 1.16765 1.21215 0.93617 0.98211 0.98654 1.21104 1.01199 0.90083 1.06719 1.18646 0.88665 0.85904 1.01480 1.86139 1.19186 1.28392 1.88652 1.21794 0.77663 0.95401 1.03229 1.19602 1.00952 0.95906 0.94557 1.21318 0.98030 0.95848 0.97614 1.21473 0.98925 0.94876 0.99539 1.21592 0.98741 1.00750 0.92251 1.21472 0.98893 0.94909 0.99539 1.21315 0.98017 0.95855 0.97621 0.91436 0.91451 0.86434 0.81232 0.83928 0.77716 0.90819 0.86849 0.82972 0.90180 0.90170 0.85267 0.83792 0.83487 0.83795 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.67 10.28 -79.16 -0.81 -8.48 16 3 C 0.09 2.30 6.70 22.56 0.15 2.45 16 4 C -0.14 -3.27 8.78 22.68 0.20 -3.07 16 5 C -0.05 -1.44 5.88 -20.07 -0.12 -1.56 16 6 C 0.07 2.28 10.75 87.07 0.94 3.22 16 7 N -0.26 -11.96 10.19 -52.28 -0.53 -12.49 16 8 N -0.59 -29.16 6.26 -180.56 -1.13 -30.29 16 9 C 0.54 32.96 7.65 84.81 0.65 33.61 16 10 O -0.62 -43.59 15.19 -5.28 -0.08 -43.67 16 11 C -0.56 -31.58 9.25 23.32 0.22 -31.36 16 12 H 0.10 4.70 7.85 -2.91 -0.02 4.68 16 13 C 0.03 1.63 5.50 85.35 0.47 2.10 16 14 N -0.80 -48.51 11.70 21.86 0.26 -48.25 16 15 Si 1.01 39.29 29.56 68.60 2.03 41.31 16 16 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 17 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 18 H -0.24 -8.72 7.11 99.48 0.71 -8.02 16 19 C -0.10 -3.16 9.58 22.63 0.22 -2.95 16 20 C -0.17 -4.72 9.01 22.32 0.20 -4.52 16 21 C 0.10 2.71 6.72 22.84 0.15 2.86 16 22 O -0.31 -8.05 9.89 -76.61 -0.76 -8.81 16 23 C 0.09 1.87 4.86 71.24 0.35 2.22 16 24 C -0.11 -2.11 5.51 -19.86 -0.11 -2.22 16 25 C -0.11 -1.90 9.70 22.27 0.22 -1.69 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 27 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 28 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 29 C -0.11 -1.90 9.70 22.27 0.22 -1.69 16 30 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 31 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 32 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.17 2.81 6.28 -2.91 -0.02 2.79 16 34 H 0.14 3.64 8.03 -2.91 -0.02 3.62 16 35 H 0.38 15.46 8.61 -213.33 -1.84 13.63 16 36 H 0.28 15.22 8.29 -92.71 -0.77 14.46 16 37 H 0.11 4.40 7.54 -2.91 -0.02 4.38 16 38 H 0.15 3.45 6.27 -2.91 -0.02 3.43 16 39 H 0.08 1.44 7.59 -2.39 -0.02 1.42 16 40 H 0.08 1.44 7.59 -2.39 -0.02 1.42 16 41 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -86.41 395.74 3.70 -82.71 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.80 Total: 33.72 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.53 Total: -5.75 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.41 Total: -91.03 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -1.65 Total: -60.95 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -86.41 3.70 -82.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000267346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.746 kcal (2) G-P(sol) polarization free energy of solvation -86.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds