Wall clock time and date at job start Tue Mar 31 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34480 * 125.35923 * 2 1 4 4 C 1.46737 * 106.49211 * 179.97438 * 3 2 1 5 5 C 1.46298 * 127.06247 * 179.97438 * 4 3 2 6 6 N 1.31033 * 120.00069 * 179.97438 * 5 4 3 7 7 N 1.40101 * 120.00053 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00182 * 180.02562 * 7 6 5 9 9 O 1.22078 * 119.99902 * 359.97438 * 8 7 6 10 10 C 1.40040 * 120.00383 * 180.02562 * 8 7 6 11 11 H 1.08005 * 119.99698 * 359.97438 * 10 8 7 12 12 C 1.40109 * 119.99990 * 179.97438 * 10 8 7 13 13 N 1.30662 * 120.00284 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99624 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47167 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47334 * 119.99955 * 14 12 10 17 17 H 1.48506 * 109.46926 * 239.99866 * 14 12 10 18 18 C 1.39234 * 105.87485 * 0.02562 * 4 3 2 19 19 C 1.50703 * 125.99559 * 179.97438 * 18 4 3 20 20 N 1.34729 * 108.00143 * 359.72961 * 18 4 3 21 21 C 1.40139 * 124.82285 * 180.29221 * 20 18 4 22 22 C 1.38915 * 119.99773 * 64.92302 * 21 20 18 23 23 C 1.37999 * 120.00728 * 179.76296 * 22 21 20 24 24 C 1.38952 * 119.99439 * 0.50693 * 23 22 21 25 25 N 1.39747 * 120.00717 * 179.76367 * 24 23 22 26 26 C 1.46498 * 119.99908 * 179.97438 * 25 24 23 27 27 C 1.46499 * 119.99759 * 359.97438 * 25 24 23 28 28 C 1.38962 * 119.99172 * 359.75248 * 24 23 22 29 29 C 1.38001 * 119.99215 * 359.97438 * 28 24 23 30 30 H 1.09002 * 109.47152 * 90.02375 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.02475 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.02456 * 1 2 3 33 33 H 1.08004 * 126.75369 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00268 * 359.97438 * 5 4 3 35 35 H 0.96997 * 120.00292 * 359.97438 * 7 6 5 36 36 H 0.96992 * 119.99737 * 179.97438 * 13 12 10 37 37 H 1.09010 * 109.47321 * 90.02586 * 19 18 4 38 38 H 1.09001 * 109.47063 * 210.02041 * 19 18 4 39 39 H 1.08999 * 109.47760 * 330.02170 * 19 18 4 40 40 H 1.08000 * 119.99342 * 0.02562 * 22 21 20 41 41 H 1.08006 * 120.00498 * 180.25892 * 23 22 21 42 42 H 1.09001 * 109.47349 * 90.00533 * 26 25 24 43 43 H 1.09006 * 109.46487 * 210.00392 * 26 25 24 44 44 H 1.09000 * 109.47398 * 329.99986 * 26 25 24 45 45 H 1.09000 * 109.46819 * 89.99925 * 27 25 24 46 46 H 1.08998 * 109.47296 * 209.99599 * 27 25 24 47 47 H 1.09006 * 109.47245 * 329.99928 * 27 25 24 48 48 H 1.08001 * 120.00388 * 179.97438 * 28 24 23 49 49 H 1.07997 * 120.00002 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6222 0.0006 5 6 4.8856 1.4418 0.0003 6 7 6.0641 0.8689 0.0015 7 7 7.2246 1.6537 0.0007 8 6 8.4367 1.0644 0.0013 9 8 8.5234 -0.1533 0.0031 10 6 9.5967 1.8489 0.0011 11 1 9.5201 2.9262 -0.0001 12 6 10.8568 1.2362 0.0023 13 7 10.9495 -0.0671 0.0042 14 14 12.4041 2.2828 0.0012 15 1 12.0298 3.7198 -0.0016 16 1 13.2060 1.9820 1.2143 17 1 13.2067 1.9784 -1.2107 18 6 3.6011 -0.7682 0.0004 19 6 4.7725 -1.7164 0.0003 20 7 2.2998 -1.1171 0.0057 21 6 1.8248 -2.4355 0.0130 22 6 2.0723 -3.2569 1.1057 23 6 1.6004 -4.5536 1.1152 24 6 0.8868 -5.0412 0.0272 25 7 0.4131 -6.3559 0.0345 26 6 -0.3398 -6.8696 -1.1125 27 6 0.6694 -7.2204 1.1891 28 6 0.6439 -4.2212 -1.0681 29 6 1.1111 -2.9227 -1.0748 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 1.9535 2.1246 -0.0004 34 1 4.8090 2.5190 -0.0008 35 1 7.1558 2.6212 -0.0011 36 1 11.8218 -0.4912 0.0047 37 1 5.0546 -1.9456 1.0280 38 1 4.4951 -2.6365 -0.5141 39 1 5.6151 -1.2531 -0.5131 40 1 2.6303 -2.8791 1.9496 41 1 1.7892 -5.1909 1.9666 42 1 0.3496 -7.3151 -1.8296 43 1 -1.0490 -7.6245 -0.7729 44 1 -0.8804 -6.0513 -1.5883 45 1 -0.1433 -7.1167 1.9081 46 1 0.7328 -8.2575 0.8595 47 1 1.6093 -6.9303 1.6587 48 1 0.0896 -4.6000 -1.9140 49 1 0.9221 -2.2851 -1.9257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000447478.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:04 Heat of formation + Delta-G solvation = 93.673051 kcal Electronic energy + Delta-G solvation = -29997.829426 eV Core-core repulsion = 25927.160093 eV Total energy + Delta-G solvation = -4070.669333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.32846 -39.55169 -37.38721 -36.53173 -34.98035 -32.69726 -32.50448 -32.17681 -31.46659 -30.12556 -28.78491 -28.56698 -28.39534 -26.57318 -24.88542 -24.10919 -22.73779 -22.22687 -21.14130 -19.82935 -19.69651 -18.54677 -17.62114 -16.97102 -16.53366 -16.32148 -15.49689 -15.47700 -15.38953 -14.93165 -14.83230 -14.09333 -13.98075 -13.85987 -13.63649 -13.44416 -13.06017 -13.05992 -12.89023 -12.77927 -12.64955 -12.53236 -12.52066 -12.42771 -12.22860 -11.97691 -11.76188 -11.71730 -11.33583 -11.28221 -11.05582 -11.02427 -10.72838 -10.53570 -10.25586 -10.12937 -9.23216 -9.07892 -8.96692 -8.51271 -7.81316 -7.60187 -7.53612 -6.71111 -6.29221 -4.83873 1.12416 1.15662 2.19391 2.63166 2.70955 3.08966 3.11304 3.16769 3.21832 3.52663 3.89245 3.94258 4.27752 4.49612 4.54052 4.56006 4.70141 4.84925 4.87292 4.91306 5.10083 5.12480 5.19855 5.22306 5.28684 5.33416 5.36397 5.44942 5.49706 5.56522 5.75573 5.77331 5.83328 5.89992 5.92486 5.95938 6.04399 6.18674 6.25915 6.29273 6.36043 6.43490 6.67134 6.83911 6.88052 7.01801 7.08525 7.30249 7.32328 7.56134 7.81875 8.01936 8.14461 8.86666 8.98843 9.50716 10.49586 10.82335 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.002035 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.407747 B =13755.318377 C =15387.407254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.003 3.997 3 C -0.167 4.167 4 C -0.128 4.128 5 C 0.071 3.929 6 N -0.212 5.212 7 N -0.598 5.598 8 C 0.562 3.438 9 O -0.559 6.559 10 C -0.538 4.538 11 H 0.069 0.931 12 C 0.088 3.912 13 N -0.745 5.745 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.074 3.926 19 C -0.085 4.085 20 N -0.391 5.391 21 C 0.061 3.939 22 C -0.056 4.056 23 C -0.186 4.186 24 C 0.219 3.781 25 N -0.637 5.637 26 C 0.092 3.908 27 C 0.092 3.908 28 C -0.188 4.188 29 C -0.059 4.059 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.365 0.635 36 H 0.272 0.728 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.128 0.872 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.613 -9.961 0.059 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.193 4.193 4 C -0.136 4.136 5 C -0.139 4.139 6 N -0.021 5.021 7 N -0.343 5.343 8 C 0.370 3.630 9 O -0.439 6.439 10 C -0.575 4.575 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.373 5.373 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.041 4.041 19 C -0.142 4.142 20 N -0.066 5.066 21 C -0.031 4.031 22 C -0.076 4.076 23 C -0.209 4.209 24 C 0.117 3.883 25 N -0.349 5.349 26 C -0.051 4.051 27 C -0.052 4.052 28 C -0.211 4.211 29 C -0.079 4.079 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.118 0.882 35 H 0.200 0.800 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.146 0.854 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.919 -12.291 0.068 27.785 hybrid contribution 0.419 1.933 0.001 1.978 sum -24.499 -10.359 0.069 26.599 Atomic orbital electron populations 1.20240 0.88640 1.02665 1.01990 1.20140 0.93007 0.85102 1.12129 1.21593 0.90897 0.96951 1.09823 1.18949 0.90880 0.90048 1.13733 1.23182 0.89726 0.95934 1.05014 1.74983 0.93730 1.25605 1.07792 1.47907 1.02933 1.06335 1.77115 1.16519 0.79617 0.88639 0.78183 1.90727 1.84905 1.14095 1.54161 1.19648 0.90103 0.94375 1.53368 0.91268 1.25745 1.00354 0.94887 0.92477 1.70066 1.25200 1.09709 1.32303 0.86209 0.80850 0.80728 0.78381 1.18564 1.19935 1.19936 1.21197 0.83600 0.94414 1.04905 1.20487 0.94699 0.96078 1.02937 1.40771 1.05195 1.02990 1.57648 1.17456 1.04806 0.84608 0.96196 1.20990 0.97023 0.92961 0.96631 1.20554 1.04723 0.96297 0.99315 1.17907 0.92334 0.84215 0.93868 1.46355 1.59541 1.09704 1.19283 1.21656 0.95496 0.99520 0.88413 1.21667 1.01338 0.94014 0.88132 1.20521 1.07541 0.93951 0.99096 1.20922 0.95752 0.94863 0.96325 0.91690 0.90601 0.92148 0.84154 0.88170 0.80024 0.91748 0.91265 0.92993 0.87191 0.85293 0.85273 0.93208 0.91503 0.91205 0.93274 0.91451 0.91049 0.85378 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 9.80 36.01 0.35 -0.41 16 2 C 0.00 0.04 6.76 -81.62 -0.55 -0.52 16 3 C -0.17 -2.46 10.99 -37.48 -0.41 -2.87 16 4 C -0.13 -2.30 6.34 -102.86 -0.65 -2.95 16 5 C 0.07 1.38 11.05 -14.65 -0.16 1.22 16 6 N -0.21 -5.04 8.64 32.08 0.28 -4.77 16 7 N -0.60 -15.08 6.26 28.80 0.18 -14.90 16 8 C 0.56 16.88 7.63 -15.58 -0.12 16.76 16 9 O -0.56 -18.97 15.18 4.85 0.07 -18.90 16 10 C -0.54 -15.38 9.22 -38.20 -0.35 -15.73 16 11 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 12 C 0.09 2.46 5.50 -17.35 -0.10 2.37 16 13 N -0.75 -22.29 11.69 55.55 0.65 -21.64 16 14 Si 0.91 19.91 29.56 -169.99 -5.02 14.89 16 15 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.07 1.31 6.88 -80.95 -0.56 0.76 16 19 C -0.08 -1.58 9.24 36.01 0.33 -1.25 16 20 N -0.39 -5.84 2.74 -51.85 -0.14 -5.98 16 21 C 0.06 0.78 4.43 -83.56 -0.37 0.41 16 22 C -0.06 -0.67 9.59 -39.42 -0.38 -1.05 16 23 C -0.19 -1.89 9.20 -39.40 -0.36 -2.25 16 24 C 0.22 2.10 6.56 -83.72 -0.55 1.55 16 25 N -0.64 -4.81 3.41 -187.49 -0.64 -5.45 16 26 C 0.09 0.48 10.19 59.85 0.61 1.09 16 27 C 0.09 0.51 10.19 59.85 0.61 1.12 16 28 C -0.19 -1.79 9.20 -39.40 -0.36 -2.15 16 29 C -0.06 -0.65 9.61 -39.42 -0.38 -1.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 33 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.10 1.69 8.04 -52.49 -0.42 1.27 16 35 H 0.36 7.89 8.62 -182.60 -1.57 6.32 16 36 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 37 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.05 0.88 7.77 -51.93 -0.40 0.47 16 39 H 0.11 2.47 6.34 -51.93 -0.33 2.14 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 1.07 6.13 -52.48 -0.32 0.75 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.24 8.07 -51.93 -0.42 -0.17 16 44 H 0.07 0.33 6.19 -51.93 -0.32 0.01 16 45 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 47 H 0.07 0.41 6.19 -51.93 -0.32 0.08 16 48 H 0.13 0.95 6.14 -52.49 -0.32 0.63 16 49 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -37.39 411.50 -10.00 -47.40 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.18 Total: 8.07 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.40 Total: -4.94 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.33 Total: -52.73 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.07 Total: -18.90 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.39 -10.00 -47.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000447478.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.071 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds