Wall clock time and date at job start Tue Mar 31 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34481 * 125.36203 * 2 1 4 4 C 1.46722 * 106.51038 * 180.02562 * 3 2 1 5 5 C 1.46323 * 127.05651 * 179.97438 * 4 3 2 6 6 N 1.31019 * 120.00227 * 179.97438 * 5 4 3 7 7 N 1.40100 * 120.00049 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99932 * 179.97438 * 7 6 5 9 9 O 1.22072 * 119.99846 * 0.02562 * 8 7 6 10 10 C 1.40083 * 120.00198 * 180.02562 * 8 7 6 11 11 H 1.08003 * 120.00061 * 353.69334 * 10 8 7 12 12 C 1.40122 * 120.00191 * 173.69583 * 10 8 7 13 13 N 1.30652 * 120.00021 * 6.29621 * 12 10 8 14 14 Si 1.86803 * 119.99983 * 186.29424 * 12 10 8 15 15 H 1.48509 * 109.46853 * 94.98662 * 14 12 10 16 16 H 1.48498 * 109.47219 * 214.98332 * 14 12 10 17 17 H 1.48499 * 109.47277 * 334.98675 * 14 12 10 18 18 C 1.39196 * 105.88803 * 359.74392 * 4 3 2 19 19 C 1.50692 * 126.00899 * 180.28566 * 18 4 3 20 20 N 1.34832 * 107.98985 * 0.41110 * 18 4 3 21 21 C 1.40093 * 124.83174 * 179.83654 * 20 18 4 22 22 C 1.39007 * 119.99639 * 294.71961 * 21 20 18 23 23 C 1.38215 * 120.22982 * 179.97438 * 22 21 20 24 24 C 1.38014 * 120.23008 * 0.30430 * 23 22 21 25 25 C 1.39643 * 119.99052 * 359.44803 * 24 23 22 26 26 C 1.47732 * 120.11906 * 180.29727 * 25 24 23 27 27 O 1.21474 * 120.00323 * 180.22809 * 26 25 24 28 28 O 1.34712 * 119.99957 * 0.23048 * 26 25 24 29 29 C 1.38584 * 119.99604 * 114.74759 * 21 20 18 30 30 H 1.08999 * 109.47074 * 270.00687 * 1 2 3 31 31 H 1.09002 * 109.46894 * 30.00528 * 1 2 3 32 32 H 1.08998 * 109.47353 * 150.00410 * 1 2 3 33 33 H 1.08002 * 126.74679 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.00238 * 359.97423 * 5 4 3 35 35 H 0.96996 * 120.00237 * 0.02562 * 7 6 5 36 36 H 0.96999 * 120.00112 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47243 * 270.14899 * 19 18 4 38 38 H 1.09010 * 109.47157 * 30.14348 * 19 18 4 39 39 H 1.09003 * 109.47862 * 150.14640 * 19 18 4 40 40 H 1.07993 * 119.88091 * 0.03114 * 22 21 20 41 41 H 1.07999 * 119.88481 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00282 * 179.70002 * 24 23 22 43 43 H 0.96699 * 116.99805 * 179.97438 * 28 26 25 44 44 H 1.08007 * 120.11366 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6226 -0.0006 5 6 4.8856 1.4428 -0.0014 6 7 6.0641 0.8704 -0.0014 7 7 7.2243 1.6557 -0.0026 8 6 8.4366 1.0669 -0.0021 9 8 8.5237 -0.1507 -0.0010 10 6 9.5967 1.8520 -0.0028 11 1 9.5229 2.9245 -0.1066 12 6 10.8530 1.2460 0.1309 13 7 10.9531 -0.0567 0.1327 14 14 12.3848 2.3007 0.3068 15 1 12.7066 2.4698 1.7467 16 1 13.5229 1.6391 -0.3804 17 1 12.1426 3.6315 -0.3059 18 6 3.6019 -0.7675 0.0050 19 6 4.7734 -1.7152 0.0127 20 7 2.2997 -1.1171 -0.0004 21 6 1.8250 -2.4351 -0.0005 22 6 2.0683 -3.2613 -1.0917 23 6 1.6027 -4.5627 -1.0967 24 6 0.8876 -5.0489 -0.0210 25 6 0.6423 -4.2288 1.0823 26 6 -0.1171 -4.7485 2.2380 27 8 -0.3329 -4.0320 3.1949 28 8 -0.5703 -6.0171 2.2307 29 6 1.1125 -2.9150 1.0869 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.9535 2.1245 -0.0004 34 1 4.8086 2.5201 -0.0019 35 1 7.1551 2.6232 -0.0031 36 1 11.8227 -0.4762 0.2256 37 1 5.0609 -1.9460 -1.0131 38 1 5.6133 -1.2506 0.5296 39 1 4.4938 -2.6346 0.5273 40 1 2.6238 -2.8852 -1.9380 41 1 1.7952 -5.1998 -1.9472 42 1 0.5214 -6.0649 -0.0308 43 1 -1.0617 -6.3122 3.0095 44 1 0.9225 -2.2746 1.9356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000550299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:18 Heat of formation + Delta-G solvation = -10.084197 kcal Electronic energy + Delta-G solvation = -29730.910341 eV Core-core repulsion = 25422.189999 eV Total energy + Delta-G solvation = -4308.720342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64431 -40.64193 -38.78831 -37.44679 -36.53134 -35.15929 -33.34575 -32.75756 -32.37114 -31.74768 -30.50191 -28.94036 -28.74366 -26.61148 -25.27485 -24.28403 -23.48729 -22.17744 -21.40250 -20.15190 -19.87750 -18.86447 -18.24949 -17.58452 -17.00195 -16.57115 -16.21881 -16.07984 -15.96142 -15.55609 -15.45356 -14.59508 -14.36250 -14.07629 -13.85865 -13.75803 -13.35370 -13.16945 -13.00696 -12.89636 -12.84312 -12.59263 -12.41424 -12.15416 -12.04405 -11.99742 -11.91301 -11.60097 -11.41377 -11.30633 -11.18766 -11.07031 -10.81976 -10.56363 -10.31802 -9.62295 -9.57397 -9.18931 -8.98773 -8.54145 -7.93465 -7.66089 -6.85100 -6.34799 -4.88164 0.14701 0.66710 1.95334 2.09906 2.38895 2.50216 2.86123 3.07227 3.14164 3.18114 3.20142 3.76403 3.87977 4.20268 4.30059 4.45839 4.51295 4.51696 4.63133 4.72862 4.89358 5.03259 5.20843 5.28980 5.33213 5.37376 5.45616 5.63349 5.69574 5.74508 5.76873 5.80104 5.85575 5.90837 6.00949 6.05263 6.10710 6.14454 6.21385 6.53000 6.73376 6.89700 7.15686 7.26394 7.34034 7.41990 7.55259 7.96478 8.08802 8.82163 8.89538 9.43686 10.44760 10.75676 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002032 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.154336 B =13779.115238 C =14716.342892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 C -0.160 4.160 4 C -0.118 4.118 5 C 0.067 3.933 6 N -0.209 5.209 7 N -0.596 5.596 8 C 0.562 3.438 9 O -0.559 6.559 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.071 3.929 19 C -0.087 4.087 20 N -0.404 5.404 21 C 0.116 3.884 22 C -0.070 4.070 23 C -0.119 4.119 24 C -0.057 4.057 25 C -0.120 4.120 26 C 0.529 3.471 27 O -0.508 6.508 28 O -0.511 6.511 29 C -0.047 4.047 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.366 0.634 36 H 0.273 0.727 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.417 0.583 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.268 -7.993 -1.140 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.186 4.186 4 C -0.126 4.126 5 C -0.143 4.143 6 N -0.018 5.018 7 N -0.341 5.341 8 C 0.370 3.630 9 O -0.439 6.439 10 C -0.575 4.575 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.372 5.372 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.042 4.042 19 C -0.144 4.144 20 N -0.081 5.081 21 C 0.026 3.974 22 C -0.089 4.089 23 C -0.137 4.137 24 C -0.075 4.075 25 C -0.122 4.122 26 C 0.373 3.627 27 O -0.397 6.397 28 O -0.323 6.323 29 C -0.066 4.066 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.121 0.879 35 H 0.201 0.799 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.276 0.724 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.330 -9.768 -1.218 25.322 hybrid contribution 0.092 1.817 0.648 1.931 sum -23.238 -7.951 -0.571 24.567 Atomic orbital electron populations 1.20296 0.88356 1.02860 1.02389 1.20173 0.93078 0.84833 1.11992 1.21654 0.90811 0.97091 1.09014 1.18978 0.91011 0.89934 1.12669 1.23162 0.89631 0.96018 1.05456 1.74950 0.93798 1.25783 1.07289 1.47940 1.02852 1.06399 1.76930 1.16540 0.79585 0.88641 0.78192 1.90725 1.84869 1.14117 1.54185 1.19621 0.90248 0.94854 1.52823 0.91230 1.25743 1.00246 0.94906 0.92536 1.70050 1.25278 1.09958 1.31927 0.86241 0.80332 0.80515 0.79041 1.19543 1.20197 1.18654 1.21222 0.83137 0.94609 1.05277 1.20526 0.94692 0.96004 1.03176 1.40835 1.05630 1.02504 1.59126 1.17469 1.00314 0.84903 0.94727 1.21648 0.96750 0.93737 0.96805 1.21114 0.98279 0.95116 0.99234 1.21579 0.94586 0.99847 0.91493 1.18811 1.04237 0.94713 0.94402 1.20750 0.76322 0.79413 0.86185 1.90927 1.55068 1.58339 1.35398 1.84531 1.68576 1.30068 1.49148 1.21300 0.94228 0.93974 0.97091 0.91323 0.90183 0.92237 0.83769 0.87945 0.79904 0.91642 0.90955 0.86933 0.93018 0.84224 0.83954 0.83773 0.72431 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.80 36.01 0.35 -0.39 16 2 C 0.00 0.06 6.75 -81.62 -0.55 -0.50 16 3 C -0.16 -2.19 10.99 -37.48 -0.41 -2.60 16 4 C -0.12 -1.99 6.34 -102.87 -0.65 -2.64 16 5 C 0.07 1.24 11.05 -14.65 -0.16 1.08 16 6 N -0.21 -4.78 8.65 32.08 0.28 -4.51 16 7 N -0.60 -14.60 6.26 28.81 0.18 -14.42 16 8 C 0.56 16.52 7.63 -15.57 -0.12 16.40 16 9 O -0.56 -18.60 15.21 4.85 0.07 -18.53 16 10 C -0.54 -15.12 9.22 -38.18 -0.35 -15.48 16 11 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 12 C 0.09 2.44 5.49 -17.35 -0.10 2.35 16 13 N -0.74 -21.94 11.72 55.55 0.65 -21.29 16 14 Si 0.91 19.62 29.56 -169.99 -5.03 14.59 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 C 0.07 1.17 6.88 -80.92 -0.56 0.61 16 19 C -0.09 -1.50 9.25 36.00 0.33 -1.17 16 20 N -0.40 -5.53 2.74 -51.92 -0.14 -5.67 16 21 C 0.12 1.33 4.42 -83.67 -0.37 0.96 16 22 C -0.07 -0.67 9.61 -39.31 -0.38 -1.05 16 23 C -0.12 -0.85 10.02 -39.67 -0.40 -1.25 16 24 C -0.06 -0.41 9.61 -39.14 -0.38 -0.79 16 25 C -0.12 -1.12 5.87 -105.01 -0.62 -1.73 16 26 C 0.53 4.96 8.27 34.61 0.29 5.25 16 27 O -0.51 -6.36 17.13 -19.25 -0.33 -6.69 16 28 O -0.51 -3.05 12.68 -40.52 -0.51 -3.56 16 29 C -0.05 -0.51 9.16 -38.97 -0.36 -0.86 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.10 1.63 8.04 -52.48 -0.42 1.21 16 35 H 0.37 7.66 8.62 -182.60 -1.57 6.09 16 36 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.11 2.40 6.36 -51.92 -0.33 2.07 16 39 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 40 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.73 7.61 -52.49 -0.40 0.33 16 43 H 0.42 0.70 9.11 45.56 0.42 1.12 16 44 H 0.14 1.70 7.65 -52.48 -0.40 1.30 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -38.46 393.27 -8.92 -47.39 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.60 Total: 8.57 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.42 Total: -1.80 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.97 Total: -45.89 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.77 Total: -28.78 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.46 -8.92 -47.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000550299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.301 kcal (2) G-P(sol) polarization free energy of solvation -38.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds