Wall clock time and date at job start Tue Mar 31 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34481 * 125.36203 * 2 1 4 4 C 1.46722 * 106.51038 * 180.02562 * 3 2 1 5 5 C 1.46323 * 127.05651 * 179.97438 * 4 3 2 6 6 N 1.31019 * 120.00227 * 179.97438 * 5 4 3 7 7 N 1.40100 * 120.00049 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99932 * 179.97438 * 7 6 5 9 9 O 1.22072 * 119.99846 * 0.02562 * 8 7 6 10 10 C 1.40083 * 120.00198 * 180.02562 * 8 7 6 11 11 H 1.08003 * 120.00061 * 353.69334 * 10 8 7 12 12 C 1.40122 * 120.00191 * 173.69583 * 10 8 7 13 13 N 1.30652 * 120.00021 * 6.29621 * 12 10 8 14 14 Si 1.86803 * 119.99983 * 186.29424 * 12 10 8 15 15 H 1.48509 * 109.46853 * 94.98662 * 14 12 10 16 16 H 1.48498 * 109.47219 * 214.98332 * 14 12 10 17 17 H 1.48499 * 109.47277 * 334.98675 * 14 12 10 18 18 C 1.39196 * 105.88803 * 359.74392 * 4 3 2 19 19 C 1.50692 * 126.00899 * 180.28566 * 18 4 3 20 20 N 1.34832 * 107.98985 * 0.41110 * 18 4 3 21 21 C 1.40093 * 124.83174 * 179.83654 * 20 18 4 22 22 C 1.39007 * 119.99639 * 294.71961 * 21 20 18 23 23 C 1.38215 * 120.22982 * 179.97438 * 22 21 20 24 24 C 1.38014 * 120.23008 * 0.30430 * 23 22 21 25 25 C 1.39643 * 119.99052 * 359.44803 * 24 23 22 26 26 C 1.47732 * 120.11906 * 180.29727 * 25 24 23 27 27 O 1.21474 * 120.00323 * 180.22809 * 26 25 24 28 28 O 1.34712 * 119.99957 * 0.23048 * 26 25 24 29 29 C 1.38584 * 119.99604 * 114.74759 * 21 20 18 30 30 H 1.08999 * 109.47074 * 270.00687 * 1 2 3 31 31 H 1.09002 * 109.46894 * 30.00528 * 1 2 3 32 32 H 1.08998 * 109.47353 * 150.00410 * 1 2 3 33 33 H 1.08002 * 126.74679 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.00238 * 359.97423 * 5 4 3 35 35 H 0.96996 * 120.00237 * 0.02562 * 7 6 5 36 36 H 0.96999 * 120.00112 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47243 * 270.14899 * 19 18 4 38 38 H 1.09010 * 109.47157 * 30.14348 * 19 18 4 39 39 H 1.09003 * 109.47862 * 150.14640 * 19 18 4 40 40 H 1.07993 * 119.88091 * 0.03114 * 22 21 20 41 41 H 1.07999 * 119.88481 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.00282 * 179.70002 * 24 23 22 43 43 H 0.96699 * 116.99805 * 179.97438 * 28 26 25 44 44 H 1.08007 * 120.11366 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6226 -0.0006 5 6 4.8856 1.4428 -0.0014 6 7 6.0641 0.8704 -0.0014 7 7 7.2243 1.6557 -0.0026 8 6 8.4366 1.0669 -0.0021 9 8 8.5237 -0.1507 -0.0010 10 6 9.5967 1.8520 -0.0028 11 1 9.5229 2.9245 -0.1066 12 6 10.8530 1.2460 0.1309 13 7 10.9531 -0.0567 0.1327 14 14 12.3848 2.3007 0.3068 15 1 12.7066 2.4698 1.7467 16 1 13.5229 1.6391 -0.3804 17 1 12.1426 3.6315 -0.3059 18 6 3.6019 -0.7675 0.0050 19 6 4.7734 -1.7152 0.0127 20 7 2.2997 -1.1171 -0.0004 21 6 1.8250 -2.4351 -0.0005 22 6 2.0683 -3.2613 -1.0917 23 6 1.6027 -4.5627 -1.0967 24 6 0.8876 -5.0489 -0.0210 25 6 0.6423 -4.2288 1.0823 26 6 -0.1171 -4.7485 2.2380 27 8 -0.3329 -4.0320 3.1949 28 8 -0.5703 -6.0171 2.2307 29 6 1.1125 -2.9150 1.0869 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.9535 2.1245 -0.0004 34 1 4.8086 2.5201 -0.0019 35 1 7.1551 2.6232 -0.0031 36 1 11.8227 -0.4762 0.2256 37 1 5.0609 -1.9460 -1.0131 38 1 5.6133 -1.2506 0.5296 39 1 4.4938 -2.6346 0.5273 40 1 2.6238 -2.8852 -1.9380 41 1 1.7952 -5.1998 -1.9472 42 1 0.5214 -6.0649 -0.0308 43 1 -1.0617 -6.3122 3.0095 44 1 0.9225 -2.2746 1.9356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000550299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:17 Heat of formation + Delta-G solvation = -36.383625 kcal Electronic energy + Delta-G solvation = -29732.050770 eV Core-core repulsion = 25422.189999 eV Total energy + Delta-G solvation = -4309.860770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.66819 -41.39514 -39.61213 -39.42498 -37.18382 -36.92271 -34.75793 -34.29777 -33.81344 -32.48964 -32.06326 -30.06816 -29.96808 -28.52747 -25.99480 -25.60906 -24.48393 -23.24635 -22.37146 -21.76762 -21.12147 -20.21816 -19.13049 -18.88298 -18.38287 -17.62732 -17.40159 -17.16020 -16.91397 -16.85756 -16.75220 -15.91775 -15.43615 -15.17965 -15.04804 -14.78371 -14.67239 -14.57078 -14.38261 -14.10207 -13.94963 -13.72830 -13.39467 -13.26963 -13.21896 -13.11295 -13.01014 -12.89847 -12.68199 -12.66328 -12.64317 -12.48211 -12.34310 -12.00089 -11.83104 -10.98939 -10.75624 -10.49168 -10.32354 -9.94082 -9.90757 -9.15375 -8.44526 -8.40667 -7.05416 -0.57239 -0.08887 0.60740 1.28134 1.39008 1.39634 1.43377 1.57853 1.65021 2.01624 2.15108 2.27784 2.45371 2.49194 2.55269 3.62529 3.64943 3.70090 3.78902 3.89780 3.92815 3.97495 4.03599 4.19287 4.23330 4.46785 4.53505 4.62075 4.66872 4.68795 4.71796 4.76848 4.94120 5.01681 5.06679 5.09575 5.14302 5.15827 5.20231 5.39031 5.43071 5.47833 5.54006 5.86984 5.94425 6.10374 6.15902 6.46917 6.70683 6.86627 7.08049 7.55263 8.44761 8.65731 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002032 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.154336 B =13779.115238 C =14716.342892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.011 3.989 3 C -0.162 4.162 4 C -0.157 4.157 5 C 0.106 3.894 6 N -0.272 5.272 7 N -0.601 5.601 8 C 0.548 3.452 9 O -0.616 6.616 10 C -0.564 4.564 11 H 0.092 0.908 12 C 0.031 3.969 13 N -0.799 5.799 14 Si 1.008 2.992 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.245 1.245 18 C 0.062 3.938 19 C -0.074 4.074 20 N -0.399 5.399 21 C 0.089 3.911 22 C -0.076 4.076 23 C -0.106 4.106 24 C -0.039 4.039 25 C -0.129 4.129 26 C 0.536 3.464 27 O -0.548 6.548 28 O -0.497 6.497 29 C -0.054 4.054 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.173 0.827 34 H 0.132 0.868 35 H 0.379 0.621 36 H 0.281 0.719 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.138 0.862 41 H 0.177 0.823 42 H 0.175 0.825 43 H 0.436 0.564 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.355 -7.971 -1.807 27.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.186 4.186 4 C -0.166 4.166 5 C -0.103 4.103 6 N -0.079 5.079 7 N -0.346 5.346 8 C 0.357 3.643 9 O -0.502 6.502 10 C -0.601 4.601 11 H 0.110 0.890 12 C -0.188 4.188 13 N -0.427 5.427 14 Si 0.826 3.174 15 H -0.186 1.186 16 H -0.192 1.192 17 H -0.168 1.168 18 C -0.054 4.054 19 C -0.132 4.132 20 N -0.074 5.074 21 C -0.001 4.001 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.057 4.057 25 C -0.131 4.131 26 C 0.382 3.618 27 O -0.440 6.440 28 O -0.311 6.311 29 C -0.074 4.074 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.190 0.810 34 H 0.149 0.851 35 H 0.217 0.783 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.194 0.806 42 H 0.192 0.808 43 H 0.299 0.701 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.504 -9.740 -1.888 27.366 hybrid contribution 0.351 1.637 0.844 1.875 sum -25.152 -8.103 -1.045 26.446 Atomic orbital electron populations 1.20408 0.85468 1.04289 1.03332 1.20848 0.94804 0.84173 1.09637 1.21951 0.88910 0.98831 1.08940 1.19245 0.91819 0.90393 1.15107 1.23785 0.89084 0.97845 0.99569 1.75108 0.94271 1.26149 1.12407 1.47283 1.02768 1.06914 1.77633 1.16938 0.81376 0.88205 0.77777 1.90661 1.86260 1.16288 1.57008 1.20162 0.90798 0.95951 1.53162 0.89029 1.27116 1.04308 0.96347 0.91025 1.70210 1.26870 1.12724 1.32930 0.84863 0.74519 0.78553 0.79454 1.18568 1.19246 1.16838 1.21098 0.84170 0.94527 1.05569 1.20255 0.93977 0.96544 1.02422 1.40956 1.04669 1.03996 1.57734 1.17659 1.02012 0.84332 0.96065 1.21778 0.96888 0.94647 0.96215 1.21486 0.96679 0.94178 1.00091 1.21927 0.92975 1.00626 0.90151 1.18923 1.04456 0.94379 0.95321 1.20738 0.75688 0.79938 0.85478 1.90918 1.56724 1.59573 1.36804 1.84479 1.68253 1.28040 1.50323 1.21152 0.94963 0.94785 0.96471 0.90526 0.87905 0.91614 0.80986 0.85105 0.78332 0.90924 0.91400 0.91164 0.91609 0.84412 0.80583 0.80781 0.70102 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.80 71.24 0.70 -0.53 16 2 C 0.01 0.27 6.75 40.90 0.28 0.54 16 3 C -0.16 -4.19 10.99 23.63 0.26 -3.93 16 4 C -0.16 -5.35 6.34 -18.73 -0.12 -5.47 16 5 C 0.11 4.03 11.05 86.92 0.96 4.99 16 6 N -0.27 -13.15 8.65 -52.40 -0.45 -13.61 16 7 N -0.60 -30.99 6.26 -180.84 -1.13 -32.12 16 8 C 0.55 34.02 7.63 84.69 0.65 34.66 16 9 O -0.62 -43.96 15.21 -5.55 -0.08 -44.04 16 10 C -0.56 -32.67 9.22 23.18 0.21 -32.46 16 11 H 0.09 4.68 7.86 -2.91 -0.02 4.66 16 12 C 0.03 1.71 5.49 85.33 0.47 2.18 16 13 N -0.80 -49.12 11.72 21.85 0.26 -48.86 16 14 Si 1.01 40.44 29.56 68.60 2.03 42.46 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 18 C 0.06 2.10 6.88 42.33 0.29 2.40 16 19 C -0.07 -2.77 9.25 71.23 0.66 -2.11 16 20 N -0.40 -10.82 2.74 -318.19 -0.87 -11.69 16 21 C 0.09 1.98 4.42 38.09 0.17 2.15 16 22 C -0.08 -1.35 9.61 22.45 0.22 -1.13 16 23 C -0.11 -1.18 10.02 22.21 0.22 -0.96 16 24 C -0.04 -0.43 9.61 22.56 0.22 -0.22 16 25 C -0.13 -2.18 5.87 -20.11 -0.12 -2.30 16 26 C 0.54 9.22 8.27 70.33 0.58 9.81 16 27 O -0.55 -13.52 17.13 19.92 0.34 -13.18 16 28 O -0.50 -4.52 12.68 -56.22 -0.71 -5.24 16 29 C -0.05 -1.16 9.16 22.67 0.21 -0.95 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 0.98 7.75 -2.39 -0.02 0.97 16 33 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.13 4.08 8.04 -2.91 -0.02 4.05 16 35 H 0.38 16.48 8.62 -213.32 -1.84 14.64 16 36 H 0.28 15.36 8.29 -92.71 -0.77 14.59 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.07 3.29 6.36 -2.38 -0.02 3.27 16 39 H 0.07 2.15 7.76 -2.39 -0.02 2.13 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.17 0.93 7.61 -2.91 -0.02 0.91 16 43 H 0.44 0.30 9.11 -74.06 -0.67 -0.37 16 44 H 0.13 3.10 7.65 -2.91 -0.02 3.08 16 Total: -1.00 -91.33 393.27 3.79 -87.54 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -1.43 Total: 32.05 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.85 Total: 6.67 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -2.20 Total: -106.28 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -0.46 Total: -62.45 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -91.33 3.79 -87.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000550299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.161 kcal (2) G-P(sol) polarization free energy of solvation -91.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds