Wall clock time and date at job start Tue Mar 31 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34431 * 125.34948 * 2 1 4 4 C 1.46723 * 106.64327 * 180.02562 * 3 2 1 5 5 C 1.46335 * 127.03217 * 179.97438 * 4 3 2 6 6 N 1.31012 * 120.00294 * 179.97438 * 5 4 3 7 7 N 1.40098 * 120.00025 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99552 * 179.97438 * 7 6 5 9 9 O 1.22063 * 120.00493 * 0.02562 * 8 7 6 10 10 C 1.40110 * 119.99642 * 180.02562 * 8 7 6 11 11 H 1.07994 * 120.00125 * 353.69702 * 10 8 7 12 12 C 1.40124 * 119.99694 * 173.70005 * 10 8 7 13 13 N 1.30647 * 120.00187 * 6.29286 * 12 10 8 14 14 Si 1.86805 * 119.99717 * 186.29629 * 12 10 8 15 15 H 1.48504 * 109.47024 * 94.98270 * 14 12 10 16 16 H 1.48499 * 109.46933 * 214.97884 * 14 12 10 17 17 H 1.48496 * 109.47174 * 334.98286 * 14 12 10 18 18 C 1.39153 * 105.93846 * 359.97438 * 4 3 2 19 19 C 1.50697 * 126.04208 * 179.97438 * 18 4 3 20 20 N 1.35473 * 107.90663 * 359.73582 * 18 4 3 21 21 C 1.39673 * 124.89817 * 180.27624 * 20 18 4 22 22 C 1.39115 * 119.91910 * 64.93860 * 21 20 18 23 23 C 1.37680 * 120.07810 * 179.76422 * 22 21 20 24 24 C 1.39782 * 119.92092 * 0.48582 * 23 22 21 25 25 C 1.47529 * 120.08060 * 179.74583 * 24 23 22 26 26 O 1.21495 * 119.99887 * 180.02562 * 25 24 23 27 27 O 1.34739 * 119.99989 * 0.02562 * 25 24 23 28 28 C 1.39774 * 119.84032 * 359.76553 * 24 23 22 29 29 C 1.37687 * 119.91792 * 0.02562 * 28 24 23 30 30 H 1.08998 * 109.47411 * 90.02506 * 1 2 3 31 31 H 1.09010 * 109.46857 * 330.02652 * 1 2 3 32 32 H 1.08994 * 109.47455 * 210.02767 * 1 2 3 33 33 H 1.08002 * 126.67894 * 359.96445 * 3 2 1 34 34 H 1.08004 * 120.00064 * 359.97438 * 5 4 3 35 35 H 0.96999 * 120.00291 * 0.02562 * 7 6 5 36 36 H 0.97011 * 119.99985 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47474 * 90.02849 * 19 18 4 38 38 H 1.09004 * 109.46724 * 210.02441 * 19 18 4 39 39 H 1.08994 * 109.47612 * 330.01937 * 19 18 4 40 40 H 1.07995 * 119.96104 * 0.02562 * 22 21 20 41 41 H 1.08004 * 120.04273 * 180.24837 * 23 22 21 42 42 H 0.96700 * 117.00226 * 180.02562 * 27 25 24 43 43 H 1.08002 * 120.04186 * 180.02562 * 28 24 23 44 44 H 1.08004 * 119.96053 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0965 0.0000 4 6 3.6745 0.6259 -0.0006 5 6 4.8839 1.4497 -0.0014 6 7 6.0640 0.8809 -0.0014 7 7 7.2219 1.6696 -0.0026 8 6 8.4359 1.0843 -0.0021 9 8 8.5267 -0.1329 -0.0010 10 6 9.5938 1.8731 -0.0028 11 1 9.5168 2.9453 -0.1065 12 6 10.8519 1.2708 0.1309 13 7 10.9558 -0.0316 0.1326 14 14 12.3806 2.3300 0.3068 15 1 12.7019 2.5000 1.7466 16 1 13.5206 1.6717 -0.3804 17 1 12.1344 3.6600 -0.3059 18 6 3.6073 -0.7640 -0.0004 19 6 4.7815 -1.7085 -0.0014 20 7 2.2996 -1.1178 0.0063 21 6 1.8274 -2.4323 0.0142 22 6 2.0777 -3.2529 1.1092 23 6 1.6097 -4.5477 1.1225 24 6 0.8909 -5.0405 0.0296 25 6 0.3926 -6.4290 0.0378 26 8 -0.2316 -6.8560 -0.9132 27 8 0.6296 -7.2237 1.0997 28 6 0.6458 -4.2147 -1.0711 29 6 1.1133 -2.9196 -1.0756 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 0.8903 0.5135 32 1 -0.3634 -0.8897 0.5142 33 1 1.9515 2.1238 -0.0005 34 1 4.8036 2.5268 -0.0019 35 1 7.1498 2.6369 -0.0031 36 1 11.8268 -0.4486 0.2255 37 1 5.0654 -1.9365 1.0261 38 1 4.5064 -2.6296 -0.5152 39 1 5.6221 -1.2427 -0.5157 40 1 2.6362 -2.8727 1.9517 41 1 1.8009 -5.1830 1.9747 42 1 0.2836 -8.1257 1.0590 43 1 0.0905 -4.5920 -1.9171 44 1 0.9247 -2.2810 -1.9260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000571762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:22 Heat of formation + Delta-G solvation = -11.142051 kcal Electronic energy + Delta-G solvation = -29537.595927 eV Core-core repulsion = 25228.829714 eV Total energy + Delta-G solvation = -4308.766214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63684 -40.66084 -38.76170 -37.47108 -36.52046 -35.18846 -33.37777 -32.77999 -32.40638 -31.56923 -30.59276 -29.08628 -28.97873 -26.69219 -24.90455 -24.27572 -23.32386 -22.38430 -21.44539 -20.09474 -19.90217 -18.75367 -18.57181 -17.84329 -17.14214 -16.83611 -16.06708 -15.99577 -15.62044 -15.47378 -15.10906 -14.59591 -14.36184 -14.09893 -13.98481 -13.78662 -13.46191 -13.20249 -13.09756 -12.94423 -12.88647 -12.60886 -12.55949 -12.18300 -12.08418 -11.98152 -11.95040 -11.50433 -11.42200 -11.28659 -11.22525 -11.09573 -10.84012 -10.57902 -10.33033 -9.60595 -9.57576 -9.22108 -9.00421 -8.57548 -7.97697 -7.68010 -6.89246 -6.36234 -4.89735 0.03853 0.82909 1.87124 2.09118 2.42394 2.53278 2.73351 3.06217 3.13212 3.17201 3.21049 3.72500 3.85772 4.17922 4.28686 4.38876 4.49874 4.58030 4.62769 4.76193 4.93699 4.98797 5.18019 5.26256 5.31818 5.39406 5.48338 5.56961 5.64386 5.71160 5.77023 5.77817 5.83688 5.90662 6.00898 6.02117 6.07999 6.13125 6.20435 6.49443 6.69761 6.86133 7.11218 7.24865 7.28568 7.42993 7.50289 7.94595 8.06883 8.80636 8.86555 9.41387 10.43272 10.73652 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.002024 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.848984 B =13831.911287 C =15502.089588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.007 3.993 3 C -0.160 4.160 4 C -0.114 4.114 5 C 0.065 3.935 6 N -0.208 5.208 7 N -0.595 5.595 8 C 0.562 3.438 9 O -0.558 6.558 10 C -0.539 4.539 11 H 0.070 0.930 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.071 3.929 19 C -0.087 4.087 20 N -0.413 5.413 21 C 0.168 3.832 22 C -0.124 4.124 23 C -0.045 4.045 24 C -0.131 4.131 25 C 0.530 3.470 26 O -0.513 6.513 27 O -0.511 6.511 28 C -0.040 4.040 29 C -0.125 4.125 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.366 0.634 36 H 0.273 0.727 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.416 0.584 43 H 0.146 0.854 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.244 -6.237 1.807 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C -0.186 4.186 4 C -0.122 4.122 5 C -0.145 4.145 6 N -0.017 5.017 7 N -0.341 5.341 8 C 0.370 3.630 9 O -0.438 6.438 10 C -0.575 4.575 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.372 5.372 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.042 4.042 19 C -0.144 4.144 20 N -0.090 5.090 21 C 0.078 3.922 22 C -0.143 4.143 23 C -0.064 4.064 24 C -0.133 4.133 25 C 0.375 3.625 26 O -0.403 6.403 27 O -0.323 6.323 28 C -0.059 4.059 29 C -0.144 4.144 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.201 0.799 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.275 0.725 43 H 0.164 0.836 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.468 -8.052 1.578 23.920 hybrid contribution 0.191 1.402 0.078 1.417 sum -22.277 -6.650 1.656 23.308 Atomic orbital electron populations 1.20301 0.88262 1.02967 1.02375 1.20166 0.93080 0.84732 1.11784 1.21655 0.90816 0.97137 1.09002 1.18986 0.91042 0.89944 1.12259 1.23161 0.89621 0.96038 1.05643 1.74943 0.93878 1.25773 1.07093 1.47956 1.02865 1.06381 1.76869 1.16553 0.79544 0.88680 0.78212 1.90725 1.84793 1.14162 1.54168 1.19625 0.90241 0.94848 1.52827 0.91217 1.25743 1.00239 0.94921 0.92536 1.70050 1.25196 1.10068 1.31866 0.86239 0.80319 0.80526 0.79038 1.19540 1.20187 1.18651 1.21369 0.82945 0.94534 1.05309 1.20535 0.94597 0.96055 1.03251 1.41045 1.05758 1.02700 1.59536 1.17986 0.96051 0.84110 0.94076 1.21321 1.01133 0.93904 0.97981 1.21375 0.93002 0.94701 0.97327 1.19116 1.05247 0.91197 0.97690 1.20771 0.76105 0.86245 0.79419 1.90909 1.38449 1.75388 1.35546 1.84561 1.74757 1.29134 1.43822 1.21138 0.95907 0.91978 0.96891 1.21207 0.99632 0.95777 0.97761 0.91291 0.90189 0.92138 0.83747 0.87902 0.79876 0.91621 0.90904 0.92958 0.86880 0.84061 0.83482 0.72491 0.83641 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.80 36.00 0.35 -0.31 16 2 C 0.01 0.09 6.75 -81.62 -0.55 -0.47 16 3 C -0.16 -2.08 10.98 -37.50 -0.41 -2.50 16 4 C -0.11 -1.87 6.34 -102.88 -0.65 -2.52 16 5 C 0.06 1.17 11.05 -14.65 -0.16 1.01 16 6 N -0.21 -4.67 8.64 32.09 0.28 -4.39 16 7 N -0.60 -14.40 6.26 28.81 0.18 -14.22 16 8 C 0.56 16.36 7.63 -15.56 -0.12 16.24 16 9 O -0.56 -18.46 15.21 4.86 0.07 -18.38 16 10 C -0.54 -15.00 9.22 -38.17 -0.35 -15.35 16 11 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 12 C 0.09 2.43 5.49 -17.35 -0.10 2.33 16 13 N -0.74 -21.81 11.72 55.55 0.65 -21.16 16 14 Si 0.91 19.48 29.56 -169.99 -5.03 14.45 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 C 0.07 1.13 6.90 -80.65 -0.56 0.58 16 19 C -0.09 -1.48 9.26 36.00 0.33 -1.15 16 20 N -0.41 -5.36 2.74 -51.73 -0.14 -5.50 16 21 C 0.17 1.84 4.46 -83.64 -0.37 1.47 16 22 C -0.12 -1.22 9.59 -39.46 -0.38 -1.60 16 23 C -0.05 -0.38 9.61 -39.21 -0.38 -0.76 16 24 C -0.13 -1.17 5.88 -104.96 -0.62 -1.79 16 25 C 0.53 4.77 8.27 34.52 0.29 5.05 16 26 O -0.51 -5.95 17.12 -19.26 -0.33 -6.28 16 27 O -0.51 -3.16 12.67 -40.60 -0.51 -3.67 16 28 C -0.04 -0.35 9.58 -39.21 -0.38 -0.73 16 29 C -0.12 -1.16 9.59 -39.46 -0.38 -1.54 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.10 1.59 8.04 -52.48 -0.42 1.17 16 35 H 0.37 7.55 8.62 -182.60 -1.57 5.97 16 36 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 39 H 0.11 2.37 6.34 -51.93 -0.33 2.04 16 40 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.15 0.97 7.60 -52.48 -0.40 0.57 16 42 H 0.42 0.76 9.11 45.56 0.42 1.17 16 43 H 0.15 1.12 7.64 -52.49 -0.40 0.72 16 44 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -37.85 393.26 -8.93 -46.78 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.60 Total: 8.47 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -4.43 Total: -2.02 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.97 Total: -45.27 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.77 Total: -28.34 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.85 -8.93 -46.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000571762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.638 kcal (2) G-P(sol) polarization free energy of solvation -37.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds