Wall clock time and date at job start Tue Mar 31 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34431 * 125.34948 * 2 1 4 4 C 1.46723 * 106.64327 * 180.02562 * 3 2 1 5 5 C 1.46335 * 127.03217 * 179.97438 * 4 3 2 6 6 N 1.31012 * 120.00294 * 179.97438 * 5 4 3 7 7 N 1.40098 * 120.00025 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99552 * 179.97438 * 7 6 5 9 9 O 1.22063 * 120.00493 * 0.02562 * 8 7 6 10 10 C 1.40110 * 119.99642 * 180.02562 * 8 7 6 11 11 H 1.07994 * 120.00125 * 353.69702 * 10 8 7 12 12 C 1.40124 * 119.99694 * 173.70005 * 10 8 7 13 13 N 1.30647 * 120.00187 * 6.29286 * 12 10 8 14 14 Si 1.86805 * 119.99717 * 186.29629 * 12 10 8 15 15 H 1.48504 * 109.47024 * 94.98270 * 14 12 10 16 16 H 1.48499 * 109.46933 * 214.97884 * 14 12 10 17 17 H 1.48496 * 109.47174 * 334.98286 * 14 12 10 18 18 C 1.39153 * 105.93846 * 359.97438 * 4 3 2 19 19 C 1.50697 * 126.04208 * 179.97438 * 18 4 3 20 20 N 1.35473 * 107.90663 * 359.73582 * 18 4 3 21 21 C 1.39673 * 124.89817 * 180.27624 * 20 18 4 22 22 C 1.39115 * 119.91910 * 64.93860 * 21 20 18 23 23 C 1.37680 * 120.07810 * 179.76422 * 22 21 20 24 24 C 1.39782 * 119.92092 * 0.48582 * 23 22 21 25 25 C 1.47529 * 120.08060 * 179.74583 * 24 23 22 26 26 O 1.21495 * 119.99887 * 180.02562 * 25 24 23 27 27 O 1.34739 * 119.99989 * 0.02562 * 25 24 23 28 28 C 1.39774 * 119.84032 * 359.76553 * 24 23 22 29 29 C 1.37687 * 119.91792 * 0.02562 * 28 24 23 30 30 H 1.08998 * 109.47411 * 90.02506 * 1 2 3 31 31 H 1.09010 * 109.46857 * 330.02652 * 1 2 3 32 32 H 1.08994 * 109.47455 * 210.02767 * 1 2 3 33 33 H 1.08002 * 126.67894 * 359.96445 * 3 2 1 34 34 H 1.08004 * 120.00064 * 359.97438 * 5 4 3 35 35 H 0.96999 * 120.00291 * 0.02562 * 7 6 5 36 36 H 0.97011 * 119.99985 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.47474 * 90.02849 * 19 18 4 38 38 H 1.09004 * 109.46724 * 210.02441 * 19 18 4 39 39 H 1.08994 * 109.47612 * 330.01937 * 19 18 4 40 40 H 1.07995 * 119.96104 * 0.02562 * 22 21 20 41 41 H 1.08004 * 120.04273 * 180.24837 * 23 22 21 42 42 H 0.96700 * 117.00226 * 180.02562 * 27 25 24 43 43 H 1.08002 * 120.04186 * 180.02562 * 28 24 23 44 44 H 1.08004 * 119.96053 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0965 0.0000 4 6 3.6745 0.6259 -0.0006 5 6 4.8839 1.4497 -0.0014 6 7 6.0640 0.8809 -0.0014 7 7 7.2219 1.6696 -0.0026 8 6 8.4359 1.0843 -0.0021 9 8 8.5267 -0.1329 -0.0010 10 6 9.5938 1.8731 -0.0028 11 1 9.5168 2.9453 -0.1065 12 6 10.8519 1.2708 0.1309 13 7 10.9558 -0.0316 0.1326 14 14 12.3806 2.3300 0.3068 15 1 12.7019 2.5000 1.7466 16 1 13.5206 1.6717 -0.3804 17 1 12.1344 3.6600 -0.3059 18 6 3.6073 -0.7640 -0.0004 19 6 4.7815 -1.7085 -0.0014 20 7 2.2996 -1.1178 0.0063 21 6 1.8274 -2.4323 0.0142 22 6 2.0777 -3.2529 1.1092 23 6 1.6097 -4.5477 1.1225 24 6 0.8909 -5.0405 0.0296 25 6 0.3926 -6.4290 0.0378 26 8 -0.2316 -6.8560 -0.9132 27 8 0.6296 -7.2237 1.0997 28 6 0.6458 -4.2147 -1.0711 29 6 1.1133 -2.9196 -1.0756 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 0.8903 0.5135 32 1 -0.3634 -0.8897 0.5142 33 1 1.9515 2.1238 -0.0005 34 1 4.8036 2.5268 -0.0019 35 1 7.1498 2.6369 -0.0031 36 1 11.8268 -0.4486 0.2255 37 1 5.0654 -1.9365 1.0261 38 1 4.5064 -2.6296 -0.5152 39 1 5.6221 -1.2427 -0.5157 40 1 2.6362 -2.8727 1.9517 41 1 1.8009 -5.1830 1.9747 42 1 0.2836 -8.1257 1.0590 43 1 0.0905 -4.5920 -1.9171 44 1 0.9247 -2.2810 -1.9260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000571762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:21 Heat of formation + Delta-G solvation = -36.565543 kcal Electronic energy + Delta-G solvation = -29538.698372 eV Core-core repulsion = 25228.829714 eV Total energy + Delta-G solvation = -4309.868659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.62574 -41.38903 -39.60221 -39.41417 -37.16680 -36.91663 -34.75932 -34.31268 -33.78749 -32.39288 -32.00910 -30.28866 -30.03848 -28.59808 -25.92808 -25.38203 -24.05115 -23.57653 -22.42984 -21.77524 -21.05783 -20.14114 -19.27672 -18.92825 -18.52498 -18.02323 -17.55617 -17.05215 -16.85451 -16.72630 -15.94195 -15.81056 -15.49799 -15.15317 -15.03650 -14.87640 -14.66881 -14.64280 -14.35200 -14.06822 -13.95630 -13.75088 -13.49766 -13.35984 -13.23627 -13.15522 -13.01571 -12.94152 -12.67093 -12.64459 -12.61795 -12.41249 -12.19342 -11.99992 -11.84414 -10.98694 -10.74977 -10.51342 -10.28468 -9.95885 -9.90495 -9.13592 -8.44874 -8.40356 -7.05070 -0.72435 0.11906 0.58290 1.23055 1.39622 1.40372 1.45802 1.58200 1.71669 1.97416 2.15020 2.28767 2.45022 2.48227 2.56356 3.57716 3.65154 3.70457 3.72126 3.91923 3.94769 4.01415 4.08009 4.21888 4.26027 4.47305 4.50828 4.63385 4.70032 4.72157 4.79649 4.82770 4.88598 4.98141 5.05980 5.11235 5.13577 5.17611 5.20614 5.38325 5.44270 5.49396 5.50576 5.87311 5.95177 6.10667 6.15083 6.47246 6.71095 6.88932 7.08328 7.55782 8.45012 8.66132 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.002024 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.848984 B =13831.911287 C =15502.089588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.163 4.163 4 C -0.152 4.152 5 C 0.105 3.895 6 N -0.271 5.271 7 N -0.601 5.601 8 C 0.548 3.452 9 O -0.616 6.616 10 C -0.565 4.565 11 H 0.092 0.908 12 C 0.031 3.969 13 N -0.800 5.800 14 Si 1.008 2.992 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.246 1.246 18 C 0.061 3.939 19 C -0.076 4.076 20 N -0.407 5.407 21 C 0.144 3.856 22 C -0.130 4.130 23 C -0.036 4.036 24 C -0.135 4.135 25 C 0.537 3.463 26 O -0.543 6.543 27 O -0.503 6.503 28 C -0.038 4.038 29 C -0.119 4.119 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.173 0.827 34 H 0.132 0.868 35 H 0.380 0.620 36 H 0.280 0.720 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.436 0.564 43 H 0.156 0.844 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.421 -5.164 2.115 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.161 4.161 5 C -0.104 4.104 6 N -0.079 5.079 7 N -0.346 5.346 8 C 0.357 3.643 9 O -0.502 6.502 10 C -0.601 4.601 11 H 0.110 0.890 12 C -0.188 4.188 13 N -0.428 5.428 14 Si 0.826 3.174 15 H -0.185 1.185 16 H -0.193 1.193 17 H -0.168 1.168 18 C -0.053 4.053 19 C -0.133 4.133 20 N -0.083 5.083 21 C 0.054 3.946 22 C -0.149 4.149 23 C -0.055 4.055 24 C -0.136 4.136 25 C 0.382 3.618 26 O -0.435 6.435 27 O -0.317 6.317 28 C -0.056 4.056 29 C -0.138 4.138 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.190 0.810 34 H 0.150 0.850 35 H 0.217 0.783 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.184 0.816 42 H 0.298 0.702 43 H 0.174 0.826 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.721 -6.963 1.900 25.753 hybrid contribution 0.499 0.931 0.006 1.057 sum -24.222 -6.032 1.906 25.034 Atomic orbital electron populations 1.20447 0.85102 1.04215 1.03870 1.20866 0.94876 0.83856 1.09083 1.21946 0.88792 0.98938 1.09058 1.19253 0.91894 0.90343 1.14569 1.23812 0.89089 0.97913 0.99598 1.75105 0.94370 1.26125 1.12314 1.47279 1.02791 1.06896 1.77611 1.16939 0.81362 0.88223 0.77766 1.90662 1.86214 1.16349 1.56982 1.20168 0.90804 0.95946 1.53160 0.89009 1.27111 1.04279 0.96366 0.91029 1.70212 1.26748 1.12842 1.32951 0.84866 0.74535 0.78531 0.79482 1.18488 1.19350 1.16850 1.21192 0.83972 0.94407 1.05764 1.20259 0.94072 0.96687 1.02300 1.41134 1.04743 1.04058 1.58321 1.18207 0.97548 0.83513 0.95326 1.21359 1.01315 0.94423 0.97807 1.21510 0.92063 0.94178 0.97718 1.19280 1.05018 0.91479 0.97835 1.20709 0.75365 0.86325 0.79374 1.90905 1.39899 1.75968 1.36734 1.84519 1.74348 1.30422 1.42421 1.21270 0.95560 0.91631 0.97168 1.21255 0.98997 0.96091 0.97426 0.89558 0.88195 0.91634 0.80959 0.85050 0.78302 0.90939 0.91713 0.91532 0.91047 0.84433 0.81632 0.70165 0.82602 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.80 71.23 0.70 -0.29 16 2 C 0.02 0.39 6.75 40.87 0.28 0.67 16 3 C -0.16 -3.85 10.98 23.62 0.26 -3.59 16 4 C -0.15 -4.91 6.34 -18.73 -0.12 -5.02 16 5 C 0.10 3.84 11.05 86.92 0.96 4.80 16 6 N -0.27 -12.86 8.64 -52.40 -0.45 -13.32 16 7 N -0.60 -30.48 6.26 -180.83 -1.13 -31.61 16 8 C 0.55 33.69 7.63 84.70 0.65 34.34 16 9 O -0.62 -43.63 15.21 -5.52 -0.08 -43.72 16 10 C -0.56 -32.40 9.22 23.18 0.21 -32.18 16 11 H 0.09 4.64 7.86 -2.91 -0.02 4.62 16 12 C 0.03 1.71 5.49 85.33 0.47 2.18 16 13 N -0.80 -48.89 11.72 21.85 0.26 -48.63 16 14 Si 1.01 40.12 29.56 68.60 2.03 42.15 16 15 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 16 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 18 C 0.06 1.97 6.90 42.22 0.29 2.27 16 19 C -0.08 -2.74 9.26 71.24 0.66 -2.08 16 20 N -0.41 -10.08 2.74 -317.58 -0.87 -10.95 16 21 C 0.14 2.96 4.46 38.31 0.17 3.13 16 22 C -0.13 -2.42 9.59 22.35 0.21 -2.20 16 23 C -0.04 -0.54 9.61 22.51 0.22 -0.33 16 24 C -0.13 -2.16 5.88 -20.08 -0.12 -2.28 16 25 C 0.54 8.67 8.27 70.27 0.58 9.25 16 26 O -0.54 -11.83 17.12 19.85 0.34 -11.49 16 27 O -0.50 -5.06 12.67 -56.49 -0.72 -5.77 16 28 C -0.04 -0.59 9.58 22.51 0.22 -0.37 16 29 C -0.12 -1.99 9.59 22.35 0.21 -1.78 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 0.80 7.75 -2.39 -0.02 0.78 16 33 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.13 3.92 8.04 -2.91 -0.02 3.89 16 35 H 0.38 16.17 8.62 -213.32 -1.84 14.33 16 36 H 0.28 15.29 8.29 -92.70 -0.77 14.52 16 37 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.11 7.79 -2.38 -0.02 2.09 16 39 H 0.07 3.26 6.34 -2.39 -0.02 3.25 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.17 1.83 7.60 -2.91 -0.02 1.80 16 42 H 0.44 0.55 9.11 -74.06 -0.67 -0.12 16 43 H 0.16 2.12 7.64 -2.91 -0.02 2.09 16 44 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -88.57 393.26 3.79 -84.79 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -1.43 Total: 32.07 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.85 Total: 6.49 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -2.20 Total: -104.51 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.46 Total: -60.98 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -88.57 3.79 -84.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000571762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.222 kcal (2) G-P(sol) polarization free energy of solvation -88.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds