Wall clock time and date at job start Tue Mar 31 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38568 * 119.97464 * 2 1 4 4 N 1.33398 * 133.64952 * 359.96124 * 3 2 1 5 5 C 1.31760 * 109.96412 * 180.02562 * 4 3 2 6 6 N 1.37601 * 125.29836 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00405 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47438 * 180.02562 * 7 6 5 9 9 C 1.38233 * 119.99764 * 269.73052 * 8 7 6 10 10 C 1.38237 * 119.99745 * 179.76521 * 9 8 7 11 11 C 1.38237 * 120.00126 * 0.50218 * 10 9 8 12 12 C 1.38234 * 119.99468 * 359.74854 * 11 10 9 13 13 C 1.38228 * 120.00556 * 359.97438 * 12 11 10 14 14 N 1.35924 * 109.39927 * 359.97438 * 5 4 3 15 15 C 1.46503 * 126.63711 * 179.97438 * 14 5 4 16 16 C 1.50702 * 109.46893 * 90.02891 * 15 14 5 17 17 H 1.07994 * 119.99825 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99669 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00109 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46765 * 60.00052 * 20 18 16 22 22 H 1.48494 * 109.47197 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47256 * 300.00424 * 20 18 16 24 24 C 1.38857 * 106.73153 * 359.97438 * 14 5 4 25 25 C 1.40598 * 134.41743 * 179.97438 * 24 14 5 26 26 O 1.21875 * 120.35142 * 0.36317 * 25 24 14 27 27 N 1.34914 * 119.30084 * 180.09045 * 25 24 14 28 28 H 0.97005 * 119.49860 * 179.97438 * 27 25 24 29 29 C 1.34418 * 120.99304 * 359.97438 * 27 25 24 30 30 O 1.21601 * 119.18854 * 179.97438 * 29 27 25 31 31 H 1.09000 * 109.47667 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47082 * 299.97923 * 1 2 3 33 33 H 1.09004 * 109.47238 * 59.97445 * 1 2 3 34 34 H 0.97010 * 119.99599 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47030 * 299.99941 * 7 6 5 36 36 H 1.09006 * 109.47152 * 59.99732 * 7 6 5 37 37 H 1.07997 * 120.00310 * 359.97438 * 9 8 7 38 38 H 1.08007 * 119.99830 * 180.22775 * 10 9 8 39 39 H 1.08000 * 119.99927 * 179.72608 * 11 10 9 40 40 H 1.08003 * 119.99672 * 179.97438 * 12 11 10 41 41 H 1.07999 * 120.00329 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46966 * 210.02970 * 15 14 5 43 43 H 1.08998 * 109.46850 * 330.02657 * 15 14 5 44 44 H 0.97005 * 119.99402 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.2003 0.0000 4 7 1.7812 2.4802 -0.0007 5 6 2.8426 3.2610 -0.0008 6 7 2.8175 4.6368 -0.0020 7 6 1.5358 5.3461 -0.0026 8 6 1.7842 6.8325 -0.0044 9 6 1.8929 7.5166 1.1919 10 6 2.1256 8.8792 1.1902 11 6 2.2393 9.5595 -0.0078 12 6 2.1254 8.8762 -1.2041 13 6 1.8985 7.5127 -1.2024 14 7 3.9659 2.4958 0.0003 15 6 5.3503 2.9752 -0.0001 16 6 5.8249 3.1406 1.4207 17 1 5.1616 2.9119 2.2416 18 6 7.1060 3.5839 1.6722 19 7 7.9135 3.8628 0.6724 20 14 7.6941 3.7896 3.4333 21 1 7.6223 2.4828 4.1349 22 1 9.0973 4.2754 3.4330 23 1 6.8299 4.7746 4.1320 24 6 3.5477 1.1717 0.0018 25 6 4.2089 -0.0691 0.0029 26 8 5.4267 -0.1180 0.0093 27 7 3.4812 -1.2051 0.0024 28 1 3.9344 -2.0628 0.0029 29 6 2.1375 -1.1663 0.0014 30 8 1.5141 -2.2104 0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5135 0.8901 33 1 -0.3634 0.5142 -0.8898 34 1 3.6487 5.1369 -0.0024 35 1 0.9691 5.0718 -0.8923 36 1 0.9691 5.0732 0.8877 37 1 1.7993 6.9859 2.1278 38 1 2.2142 9.4131 2.1249 39 1 2.4167 10.6249 -0.0091 40 1 2.2139 9.4078 -2.1401 41 1 1.8091 6.9790 -2.1371 42 1 5.9849 2.2527 -0.5134 43 1 5.4023 3.9347 -0.5146 44 1 8.8150 4.1744 0.8496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002029675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:23 Heat of formation + Delta-G solvation = 48.887829 kcal Electronic energy + Delta-G solvation = -31226.062668 eV Core-core repulsion = 26952.192297 eV Total energy + Delta-G solvation = -4273.870372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35810 -40.51588 -39.38498 -38.46727 -36.34731 -35.30974 -34.40590 -33.86871 -32.08717 -31.54999 -31.00287 -28.97525 -27.45462 -26.84813 -25.67262 -23.95083 -23.09898 -22.67907 -22.47912 -21.38610 -20.11448 -19.06540 -18.39809 -17.28583 -17.00542 -16.91313 -16.50624 -16.29566 -15.50778 -15.46046 -15.42813 -15.02930 -14.91505 -14.69706 -14.34636 -14.29262 -14.20604 -13.55363 -13.20875 -13.08636 -12.98427 -12.85228 -12.61650 -12.38569 -12.26390 -11.85686 -11.28206 -11.16882 -11.15244 -10.97716 -10.84498 -10.66810 -10.38009 -10.07469 -9.98745 -9.96946 -9.54454 -9.21105 -9.01998 -8.97294 -8.67615 -8.62121 -6.99998 -6.30173 -4.38532 1.12187 1.30398 1.60958 2.17214 2.32351 2.75053 3.19437 3.24450 3.25952 3.31440 3.48084 3.68034 3.94119 3.99343 4.25461 4.57134 4.71705 4.76083 4.89895 4.96435 5.01821 5.05073 5.30121 5.37801 5.38347 5.47463 5.57992 5.63022 5.70467 5.80920 5.89531 5.93228 5.95151 6.16070 6.26817 6.32562 6.39639 6.50797 6.66784 6.83314 6.87036 7.00077 7.26285 7.31994 7.50394 7.61021 7.79607 7.83752 7.98497 8.28271 8.47843 8.64427 9.28231 10.77450 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.007325 B = 0.004115 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3821.486840 B = 6802.072276 C = 9844.504454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.508 5.508 3 C 0.317 3.683 4 N -0.547 5.547 5 C 0.541 3.459 6 N -0.698 5.698 7 C 0.190 3.810 8 C -0.107 4.107 9 C -0.094 4.094 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.125 4.125 13 C -0.097 4.097 14 N -0.409 5.409 15 C 0.238 3.762 16 C -0.538 4.538 17 H 0.062 0.938 18 C 0.071 3.929 19 N -0.886 5.886 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.275 1.275 24 C -0.154 4.154 25 C 0.587 3.413 26 O -0.500 6.500 27 N -0.657 5.657 28 H 0.432 0.568 29 C 0.714 3.286 30 O -0.561 6.561 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.419 0.581 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.642 6.495 -2.973 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.237 5.237 3 C 0.084 3.916 4 N -0.281 5.281 5 C 0.186 3.814 6 N -0.342 5.342 7 C 0.066 3.934 8 C -0.107 4.107 9 C -0.113 4.113 10 C -0.142 4.142 11 C -0.132 4.132 12 C -0.143 4.143 13 C -0.116 4.116 14 N -0.096 5.096 15 C 0.120 3.880 16 C -0.576 4.576 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.524 5.524 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.200 1.200 24 C -0.272 4.272 25 C 0.381 3.619 26 O -0.374 6.374 27 N -0.326 5.326 28 H 0.274 0.726 29 C 0.415 3.585 30 O -0.436 6.436 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.258 0.742 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.964 6.434 -3.029 16.568 hybrid contribution 1.864 -0.098 0.999 2.117 sum -13.100 6.336 -2.030 14.693 Atomic orbital electron populations 1.21855 0.75262 1.04579 1.03254 1.43571 1.08294 1.01183 1.70662 1.17645 0.87088 0.86616 1.00280 1.69479 1.26797 0.98035 1.33817 1.18765 0.81234 0.85382 0.95995 1.43214 1.09474 0.98580 1.82964 1.20026 0.84590 0.85867 1.02912 1.19905 1.02131 0.95116 0.93563 1.21170 0.97912 0.94372 0.97833 1.21173 1.00285 0.94532 0.98192 1.21203 0.99396 0.99925 0.92684 1.21148 1.00535 0.94478 0.98156 1.21129 0.98401 0.94395 0.97662 1.45365 1.08934 1.02090 1.53252 1.19909 0.72126 0.96335 0.99622 1.21115 0.98927 1.46806 0.90740 0.91934 1.24876 0.95937 0.94508 0.98022 1.69903 1.07642 1.43747 1.31070 0.86439 0.77800 0.78794 0.83815 1.19902 1.20884 1.20005 1.18244 0.92131 0.86955 1.29853 1.15431 0.86838 0.82614 0.76996 1.91013 1.12168 1.86712 1.47460 1.44097 1.06057 1.11811 1.70643 0.72593 1.15422 0.81690 0.83261 0.78133 1.91000 1.66210 1.29537 1.56895 0.88565 0.90796 0.90794 0.74175 0.90879 0.90833 0.85638 0.85974 0.86170 0.86017 0.85764 0.91664 0.93607 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 10.63 59.85 0.64 1.72 16 2 N -0.51 -8.03 3.06 -128.30 -0.39 -8.42 16 3 C 0.32 5.76 7.68 -154.61 -1.19 4.58 16 4 N -0.55 -9.66 10.77 -12.76 -0.14 -9.80 16 5 C 0.54 9.99 8.45 -320.33 -2.71 7.29 16 6 N -0.70 -10.74 5.66 -63.02 -0.36 -11.09 16 7 C 0.19 2.27 6.07 -5.20 -0.03 2.24 16 8 C -0.11 -1.18 5.25 -104.62 -0.55 -1.73 16 9 C -0.09 -1.03 9.70 -39.58 -0.38 -1.41 16 10 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 11 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 12 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 13 C -0.10 -1.00 9.70 -39.59 -0.38 -1.39 16 14 N -0.41 -8.78 2.82 -116.16 -0.33 -9.10 16 15 C 0.24 5.79 5.49 -5.19 -0.03 5.77 16 16 C -0.54 -14.28 9.39 -34.44 -0.32 -14.60 16 17 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 19 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.15 -3.21 6.91 -83.48 -0.58 -3.79 16 25 C 0.59 12.02 7.71 -15.31 -0.12 11.90 16 26 O -0.50 -11.98 16.83 5.03 0.08 -11.89 16 27 N -0.66 -10.89 5.20 -18.75 -0.10 -10.98 16 28 H 0.43 6.06 8.86 -40.82 -0.36 5.69 16 29 C 0.71 11.72 8.37 -87.37 -0.73 10.99 16 30 O -0.56 -9.62 16.39 5.28 0.09 -9.54 16 31 H 0.10 1.07 6.85 -51.93 -0.36 0.71 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.42 6.76 7.65 -40.82 -0.31 6.45 16 35 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.07 1.78 7.28 -51.93 -0.38 1.41 16 43 H 0.05 1.09 7.47 -51.93 -0.39 0.71 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -32.03 382.79 -12.47 -44.51 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.14 Total: 9.81 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: -7.68 Total: 18.68 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -0.57 Total: -73.27 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.17 Total: -21.43 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.03 -12.47 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002029675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.395 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds