Wall clock time and date at job start Tue Mar 31 2020 05:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35949 * 117.00183 * 2 1 4 4 C 1.38576 * 120.07948 * 359.97438 * 3 2 1 5 5 C 1.38232 * 120.00809 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.18257 * 0.02562 * 5 4 3 7 7 C 1.38168 * 120.16934 * 359.97438 * 6 5 4 8 8 C 1.38745 * 119.98663 * 0.02562 * 7 6 5 9 9 N 1.40184 * 120.08949 * 179.97438 * 8 7 6 10 10 C 1.36822 * 119.79442 * 269.72204 * 9 8 7 11 11 S 1.76199 * 118.47243 * 359.97438 * 10 9 8 12 12 C 1.76205 * 100.00107 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99755 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00329 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99885 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47281 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46691 * 120.00391 * 16 14 12 19 19 H 1.48496 * 109.46714 * 240.00081 * 16 14 12 20 20 N 1.30964 * 123.04956 * 179.73230 * 10 9 8 21 21 C 1.34753 * 121.64798 * 0.55239 * 20 10 9 22 22 C 1.39840 * 121.53720 * 179.75177 * 21 20 10 23 23 C 1.36601 * 119.80664 * 179.97438 * 22 21 20 24 24 C 1.38926 * 120.98573 * 0.02562 * 23 22 21 25 25 C 1.37774 * 120.58638 * 359.95367 * 24 23 22 26 26 C 1.39409 * 119.41240 * 0.04461 * 25 24 23 27 27 C 1.35343 * 119.79910 * 89.99351 * 9 8 7 28 28 O 1.21737 * 121.25206 * 0.02562 * 27 9 8 29 29 H 1.09007 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47354 * 299.99894 * 1 2 3 31 31 H 1.09000 * 109.46681 * 60.00597 * 1 2 3 32 32 H 1.07997 * 119.99606 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.90381 * 180.27215 * 5 4 3 34 34 H 1.08002 * 119.91270 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.00599 * 180.02562 * 7 6 5 36 36 H 0.97002 * 119.99970 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.09886 * 359.95687 * 22 21 20 38 38 H 1.08004 * 119.50923 * 179.97438 * 23 22 21 39 39 H 1.07996 * 119.70549 * 179.97438 * 24 23 22 40 40 H 1.08004 * 120.29422 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2932 2.3746 -0.0005 5 6 1.9223 3.6054 -0.0011 6 6 3.3032 3.6804 -0.0016 7 6 4.0614 2.5253 -0.0011 8 6 3.4372 1.2862 -0.0005 9 7 4.2043 0.1129 -0.0005 10 6 4.5710 -0.4596 -1.1879 11 16 4.0567 0.3113 -2.6864 12 6 4.7706 -0.7929 -3.8594 13 1 5.3331 -1.6505 -3.5208 14 6 4.6091 -0.5613 -5.2184 15 7 3.9237 0.4828 -5.6307 16 14 5.3666 -1.7317 -6.4618 17 1 6.0826 -2.8183 -5.7465 18 1 4.2951 -2.3178 -7.3065 19 1 6.3238 -0.9894 -7.3209 20 7 5.2905 -1.5514 -1.2623 21 6 5.7128 -2.1965 -0.1572 22 6 6.4767 -3.3650 -0.2393 23 6 6.8865 -3.9901 0.9040 24 6 6.5557 -3.4829 2.1544 25 6 5.8049 -2.3334 2.2684 26 6 5.3757 -1.6788 1.1148 27 6 4.5729 -0.4498 1.1739 28 8 4.2506 0.0435 2.2392 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2146 2.3195 -0.0005 33 1 1.3337 4.5110 0.0030 34 1 3.7902 4.6444 -0.0016 35 1 5.1396 2.5870 -0.0011 36 1 3.8106 0.6444 -6.5804 37 1 6.7415 -3.7723 -1.2039 38 1 7.4759 -4.8925 0.8350 39 1 6.8904 -3.9941 3.0449 40 1 5.5500 -1.9435 3.2428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002216352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:00 Heat of formation + Delta-G solvation = 12.954314 kcal Electronic energy + Delta-G solvation = -28690.523605 eV Core-core repulsion = 24755.147976 eV Total energy + Delta-G solvation = -3935.375629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27511 -39.76585 -38.03020 -37.20687 -36.64493 -33.89102 -32.83808 -31.01332 -30.20610 -29.63806 -29.26954 -27.18980 -25.84113 -24.43923 -24.25090 -22.15845 -21.97692 -21.39240 -19.02014 -18.75085 -18.07394 -17.53830 -17.00841 -16.39658 -15.60432 -15.45749 -15.14897 -15.09382 -15.00909 -14.67487 -14.42790 -14.10684 -13.90366 -13.59173 -13.43471 -13.13041 -12.77513 -12.57970 -12.17483 -12.05039 -11.71151 -11.56557 -11.45505 -11.26714 -11.23781 -11.18304 -11.07538 -11.03957 -10.36120 -9.69245 -9.63280 -9.47315 -9.32980 -8.98777 -8.75350 -8.73029 -8.08491 -8.00581 -6.87182 -6.64503 -4.37864 1.04839 1.26044 1.31265 1.52055 2.35207 2.77562 3.06622 3.08331 3.14612 3.21278 3.24081 3.37172 3.75986 3.88238 4.51022 4.76155 4.82691 4.84338 4.86880 4.96309 5.13464 5.15369 5.20162 5.22546 5.27162 5.34806 5.43819 5.53318 5.58106 5.64147 5.74893 5.82480 6.00668 6.24713 6.32585 6.39373 6.50743 6.51771 6.60896 6.77108 6.80242 6.86346 7.09669 7.26300 7.43573 7.45608 8.25046 8.31235 8.61976 8.88908 10.42451 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.007094 B = 0.006049 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3946.160516 B = 4627.907173 C = 7492.313568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.157 3.843 4 C -0.206 4.206 5 C -0.067 4.067 6 C -0.150 4.150 7 C -0.053 4.053 8 C 0.083 3.917 9 N -0.484 5.484 10 C 0.335 3.665 11 S 0.189 5.811 12 C -0.539 4.539 13 H 0.119 0.881 14 C 0.077 3.923 15 N -0.869 5.869 16 Si 0.933 3.067 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 N -0.542 5.542 21 C 0.205 3.795 22 C -0.136 4.136 23 C -0.068 4.068 24 C -0.180 4.180 25 C -0.028 4.028 26 C -0.234 4.234 27 C 0.561 3.439 28 O -0.526 6.526 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.277 0.723 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 1.482 9.416 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.110 3.890 4 C -0.225 4.225 5 C -0.085 4.085 6 C -0.169 4.169 7 C -0.072 4.072 8 C -0.008 4.008 9 N -0.206 5.206 10 C -0.028 4.028 11 S 0.434 5.566 12 C -0.687 4.687 13 H 0.136 0.864 14 C -0.133 4.133 15 N -0.503 5.503 16 Si 0.758 3.242 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.202 1.202 20 N -0.270 5.270 21 C 0.084 3.916 22 C -0.158 4.158 23 C -0.088 4.088 24 C -0.201 4.201 25 C -0.048 4.048 26 C -0.244 4.244 27 C 0.355 3.645 28 O -0.402 6.402 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.783 2.393 8.835 9.905 hybrid contribution 0.647 -1.377 0.141 1.528 sum -3.136 1.016 8.977 9.563 Atomic orbital electron populations 1.23093 0.78278 1.04109 1.01269 1.86186 1.21469 1.26243 1.87844 1.19063 0.90798 0.85110 0.94080 1.21098 1.00041 0.91764 1.09619 1.20995 0.94622 0.96910 0.95956 1.20879 0.93738 0.97851 1.04454 1.21052 1.00496 0.90294 0.95361 1.16879 0.87016 0.86064 1.10822 1.43783 1.47252 1.23104 1.06487 1.26433 0.91909 0.92300 0.92156 1.83824 1.56846 1.28951 0.86939 1.23721 1.39203 1.14608 0.91180 0.86358 1.25205 0.94231 0.95959 0.97952 1.69920 1.37001 1.26311 1.17029 0.85856 0.78923 0.80093 0.79326 1.18624 1.20261 1.20218 1.69112 1.21277 1.09482 1.27150 1.18927 0.91841 0.93262 0.87547 1.20517 1.00834 0.95275 0.99128 1.20850 0.97147 0.98546 0.92225 1.20859 1.03685 0.98143 0.97421 1.20850 0.93524 0.93413 0.97007 1.20416 1.09059 0.99201 0.95698 1.18442 0.79326 0.84128 0.82590 1.90769 1.56583 1.64723 1.28144 0.88254 0.92752 0.92148 0.84831 0.85303 0.85071 0.84980 0.91346 0.85053 0.85998 0.86138 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.52 10.24 -19.58 -0.20 -5.72 16 3 C 0.16 2.80 6.70 -39.06 -0.26 2.54 16 4 C -0.21 -2.90 9.04 -39.46 -0.36 -3.25 16 5 C -0.07 -0.84 10.04 -39.56 -0.40 -1.23 16 6 C -0.15 -2.03 10.04 -39.59 -0.40 -2.43 16 7 C -0.05 -0.88 9.96 -39.42 -0.39 -1.28 16 8 C 0.08 1.62 3.14 -83.46 -0.26 1.36 16 9 N -0.48 -10.44 2.43 -61.15 -0.15 -10.59 16 10 C 0.34 7.76 7.75 -88.34 -0.68 7.08 16 11 S 0.19 4.57 20.32 -107.50 -2.18 2.38 16 12 C -0.54 -14.20 9.23 30.94 0.29 -13.92 16 13 H 0.12 3.18 6.48 -52.49 -0.34 2.84 16 14 C 0.08 1.98 5.49 -17.47 -0.10 1.88 16 15 N -0.87 -22.99 13.22 55.49 0.73 -22.26 16 16 Si 0.93 20.06 29.55 -169.99 -5.02 15.03 16 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 N -0.54 -12.70 8.28 -10.85 -0.09 -12.78 16 21 C 0.20 4.30 6.62 -84.78 -0.56 3.74 16 22 C -0.14 -2.40 9.98 -39.57 -0.40 -2.79 16 23 C -0.07 -0.98 9.95 -39.92 -0.40 -1.38 16 24 C -0.18 -2.60 10.02 -39.50 -0.40 -2.99 16 25 C -0.03 -0.49 9.68 -39.32 -0.38 -0.87 16 26 C -0.23 -4.78 5.90 -104.74 -0.62 -5.40 16 27 C 0.56 12.27 7.63 -12.49 -0.10 12.17 16 28 O -0.53 -11.95 16.69 5.16 0.09 -11.87 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 31 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 32 H 0.13 1.47 6.30 -52.49 -0.33 1.14 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.13 2.01 7.82 -52.48 -0.41 1.60 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -32.05 363.73 -9.73 -41.78 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.97 Total: 3.96 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -4.41 Total: -5.43 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.50 Total: -45.63 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.11 Total: -17.59 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -2.18 Total: 2.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.05 -9.73 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002216352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.739 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds