Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35944 * 116.99771 * 2 1 4 4 C 1.38743 * 119.98504 * 180.02562 * 3 2 1 5 5 C 1.38071 * 120.01591 * 180.02562 * 4 3 2 6 6 C 1.38852 * 119.98573 * 359.97438 * 5 4 3 7 7 N 1.40182 * 120.01429 * 179.97438 * 6 5 4 8 8 C 1.36823 * 119.79480 * 90.15562 * 7 6 5 9 9 S 1.76195 * 118.47600 * 359.95816 * 8 7 6 10 10 C 1.76198 * 100.00106 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38811 * 120.00073 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99826 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99904 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46845 * 90.00539 * 14 12 10 16 16 H 1.48501 * 109.46762 * 210.00127 * 14 12 10 17 17 H 1.48497 * 109.47273 * 329.99876 * 14 12 10 18 18 N 1.30967 * 123.04501 * 179.97438 * 8 7 6 19 19 C 1.34752 * 121.65025 * 0.02562 * 18 8 7 20 20 C 1.39846 * 121.53541 * 179.97438 * 19 18 8 21 21 C 1.36600 * 119.80755 * 180.02562 * 20 19 18 22 22 C 1.38927 * 120.97982 * 359.97438 * 21 20 19 23 23 C 1.37767 * 120.59032 * 359.97438 * 22 21 20 24 24 C 1.39407 * 119.41323 * 0.02562 * 23 22 21 25 25 C 1.35343 * 119.79799 * 270.13533 * 7 6 5 26 26 O 1.21747 * 121.25289 * 0.04293 * 25 7 6 27 27 C 1.38863 * 119.97039 * 0.25418 * 6 5 4 28 28 C 1.38069 * 119.98434 * 359.51591 * 27 6 5 29 29 H 1.09002 * 109.47081 * 59.99890 * 1 2 3 30 30 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47693 * 299.99960 * 1 2 3 32 32 H 1.08007 * 119.99145 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00612 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99769 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.09896 * 0.04134 * 20 19 18 36 36 H 1.08001 * 119.51216 * 180.27519 * 21 20 19 37 37 H 1.08003 * 119.69955 * 180.02562 * 22 21 20 38 38 H 1.08010 * 120.29257 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.00272 * 179.73796 * 27 6 5 40 40 H 1.08006 * 119.98910 * 180.23392 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 3.4317 1.2836 -0.0005 5 6 4.0591 2.5135 0.0000 6 6 3.3032 3.6782 0.0005 7 7 3.9396 4.9272 0.0016 8 6 4.2458 5.5353 -1.1852 9 16 3.8230 4.7120 -2.6845 10 6 4.4165 5.8865 -3.8563 11 1 4.8822 6.7999 -3.5169 12 6 4.2855 5.6377 -5.2157 13 7 4.7281 6.5146 -6.0903 14 14 3.4807 4.0575 -5.8026 15 1 2.0192 4.2730 -5.9541 16 1 4.0610 3.6629 -7.1113 17 1 3.7220 2.9804 -4.8093 18 7 4.8388 6.7007 -1.2585 19 6 5.1911 7.3855 -0.1527 20 6 5.8247 8.6296 -0.2337 21 6 6.1668 9.2931 0.9102 22 6 5.8944 8.7511 2.1601 23 6 5.2704 7.5280 2.2729 24 6 4.9122 6.8331 1.1187 25 6 4.2470 5.5244 1.1766 26 8 3.9820 4.9971 2.2415 27 6 1.9165 3.6052 0.0059 28 6 1.2903 2.3747 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0196 0.3776 -0.0005 33 1 5.1376 2.5696 0.0000 34 1 4.6369 6.3405 -7.0402 35 1 6.0427 9.0646 -1.1979 36 1 6.6520 10.2556 0.8422 37 1 6.1736 9.2938 3.0511 38 1 5.0605 7.1113 3.2470 39 1 1.3280 4.5108 0.0106 40 1 0.2117 2.3178 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002361812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = 15.380472 kcal Electronic energy + Delta-G solvation = -28012.543186 eV Core-core repulsion = 24077.272762 eV Total energy + Delta-G solvation = -3935.270423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37133 -40.03617 -38.46086 -37.33340 -36.60503 -33.74648 -32.80974 -31.23247 -31.04492 -29.61311 -29.16905 -27.32838 -25.99921 -24.53939 -24.26771 -22.79808 -21.84615 -21.51252 -19.16431 -18.66077 -18.27952 -17.95688 -17.07040 -16.62593 -15.86794 -15.51904 -15.45445 -15.22098 -15.08705 -14.66088 -14.53579 -14.02487 -13.86224 -13.57622 -13.50961 -13.13919 -12.93883 -12.91333 -12.75843 -12.25795 -12.01805 -11.98558 -11.66346 -11.42013 -11.39397 -11.34151 -11.18261 -11.01636 -10.33928 -9.86889 -9.75191 -9.45964 -9.33634 -9.11486 -9.07098 -8.85477 -8.28027 -8.20017 -7.12593 -6.60667 -4.40441 0.88596 1.19805 1.20026 1.30316 1.99155 2.62812 2.82945 3.01011 3.07851 3.10189 3.12033 3.16171 3.61528 3.92966 4.20180 4.38595 4.68590 4.70563 4.78182 4.80500 4.93119 4.95361 4.97643 5.11180 5.19024 5.22456 5.27885 5.35392 5.47266 5.53869 5.70052 5.73275 5.91679 5.96753 6.19670 6.29371 6.39724 6.42212 6.42867 6.62995 6.71299 6.75794 6.94096 7.14868 7.24759 7.64585 8.07936 8.44060 8.57777 8.77001 10.46731 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.007110 B = 0.005461 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3937.446107 B = 5126.129932 C = 8692.752135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.138 3.862 4 C -0.142 4.142 5 C -0.050 4.050 6 C 0.079 3.921 7 N -0.493 5.493 8 C 0.353 3.647 9 S 0.098 5.902 10 C -0.530 4.530 11 H 0.134 0.866 12 C 0.103 3.897 13 N -0.848 5.848 14 Si 0.837 3.163 15 H -0.260 1.260 16 H -0.262 1.262 17 H -0.237 1.237 18 N -0.524 5.524 19 C 0.199 3.801 20 C -0.128 4.128 21 C -0.069 4.069 22 C -0.173 4.173 23 C -0.032 4.032 24 C -0.230 4.230 25 C 0.558 3.442 26 O -0.521 6.521 27 C -0.049 4.049 28 C -0.200 4.200 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.278 0.722 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -6.319 11.114 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.092 3.908 4 C -0.162 4.162 5 C -0.070 4.070 6 C -0.011 4.011 7 N -0.216 5.216 8 C -0.012 4.012 9 S 0.341 5.659 10 C -0.678 4.678 11 H 0.152 0.848 12 C -0.109 4.109 13 N -0.481 5.481 14 Si 0.660 3.340 15 H -0.185 1.185 16 H -0.186 1.186 17 H -0.162 1.162 18 N -0.251 5.251 19 C 0.079 3.921 20 C -0.149 4.149 21 C -0.088 4.088 22 C -0.193 4.193 23 C -0.051 4.051 24 C -0.239 4.239 25 C 0.352 3.648 26 O -0.397 6.397 27 C -0.069 4.069 28 C -0.219 4.219 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.268 -7.478 10.502 13.927 hybrid contribution -0.100 0.570 0.360 0.682 sum -5.368 -6.909 10.862 13.947 Atomic orbital electron populations 1.23085 0.78334 1.03926 1.01617 1.86076 1.21471 1.26788 1.88548 1.19052 0.92311 0.84110 0.95285 1.20220 0.91320 0.98025 1.06586 1.21002 1.00291 0.90411 0.95265 1.17474 0.91488 0.83976 1.08201 1.44010 1.53323 1.17838 1.06403 1.25614 0.92676 0.92147 0.90767 1.83294 1.66519 1.24978 0.91067 1.22962 1.45398 1.08388 0.91017 0.84838 1.24750 0.93998 0.96669 0.95465 1.69846 1.41630 1.34196 1.02441 0.87106 0.81261 0.84143 0.81466 1.18479 1.18610 1.16159 1.69100 1.22558 1.06176 1.27243 1.18911 0.92076 0.93772 0.87313 1.20606 1.01172 0.93716 0.99417 1.20903 0.96762 0.99039 0.92141 1.20927 1.04140 0.96701 0.97553 1.20865 0.93786 0.93452 0.97026 1.20445 1.11063 0.96702 0.95736 1.18470 0.78423 0.85340 0.82536 1.90801 1.54427 1.66497 1.28005 1.20967 0.92829 0.98029 0.95045 1.21038 1.00184 0.91453 1.09232 0.92358 0.88259 0.92541 0.84353 0.84772 0.91176 0.84643 0.85726 0.85926 0.85418 0.85218 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.73 10.50 -19.56 -0.21 -3.94 16 3 C 0.14 1.84 6.69 -39.21 -0.26 1.58 16 4 C -0.14 -1.95 9.98 -39.46 -0.39 -2.35 16 5 C -0.05 -0.79 9.96 -39.42 -0.39 -1.18 16 6 C 0.08 1.38 3.12 -83.58 -0.26 1.12 16 7 N -0.49 -9.68 2.67 -61.24 -0.16 -9.84 16 8 C 0.35 7.61 7.75 -88.34 -0.68 6.93 16 9 S 0.10 2.16 18.29 -107.50 -1.97 0.20 16 10 C -0.53 -13.91 9.77 30.94 0.30 -13.61 16 11 H 0.13 3.86 6.71 -52.49 -0.35 3.51 16 12 C 0.10 2.70 5.50 -17.47 -0.10 2.61 16 13 N -0.85 -23.26 13.96 55.49 0.77 -22.49 16 14 Si 0.84 18.36 27.74 -169.99 -4.71 13.64 16 15 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.24 -4.97 6.74 56.52 0.38 -4.59 16 18 N -0.52 -11.80 8.28 -10.85 -0.09 -11.89 16 19 C 0.20 3.98 6.62 -84.78 -0.56 3.42 16 20 C -0.13 -2.19 9.98 -39.57 -0.40 -2.58 16 21 C -0.07 -0.95 9.95 -39.92 -0.40 -1.35 16 22 C -0.17 -2.34 10.02 -39.50 -0.40 -2.73 16 23 C -0.03 -0.51 9.68 -39.32 -0.38 -0.89 16 24 C -0.23 -4.39 5.90 -104.75 -0.62 -5.01 16 25 C 0.56 11.22 7.63 -12.49 -0.10 11.12 16 26 O -0.52 -10.96 16.69 5.15 0.09 -10.88 16 27 C -0.05 -0.76 9.96 -39.41 -0.39 -1.16 16 28 C -0.20 -2.61 9.03 -39.46 -0.36 -2.97 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.13 1.89 7.82 -52.48 -0.41 1.47 16 39 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 40 H 0.14 1.36 6.29 -52.48 -0.33 1.03 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -30.77 361.35 -9.22 -40.00 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.00 Total: 5.62 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -4.39 Total: -5.87 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.52 Total: -44.23 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.12 Total: -14.81 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.71 Total: 13.64 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.97 Total: 0.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.77 -9.22 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002361812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.380 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds