Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38319 * 119.92501 * 2 1 4 4 C 1.38055 * 120.08597 * 179.97438 * 3 2 1 5 5 C 1.39002 * 119.91897 * 0.02562 * 4 3 2 6 6 S 1.76200 * 120.08145 * 180.02562 * 5 4 3 7 7 C 1.81395 * 102.99858 * 359.97438 * 6 5 4 8 8 C 1.50707 * 109.46757 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00209 * 354.34925 * 8 7 6 10 10 N 1.34776 * 119.99655 * 174.35176 * 8 7 6 11 11 C 1.46506 * 119.99979 * 184.45333 * 10 8 7 12 12 C 1.50698 * 109.46842 * 270.00231 * 11 10 8 13 13 H 1.07997 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99790 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99920 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00052 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46982 * 60.00432 * 16 14 12 18 18 H 1.48501 * 109.47129 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47238 * 300.00147 * 16 14 12 20 20 C 1.39931 * 120.00433 * 4.45182 * 10 8 7 21 21 C 1.38878 * 120.06633 * 66.78394 * 20 10 8 22 22 C 1.38109 * 119.92604 * 179.97438 * 21 20 10 23 23 C 1.38285 * 120.07015 * 0.02562 * 22 21 20 24 24 C 1.38284 * 120.14301 * 359.95859 * 23 22 21 25 25 C 1.38114 * 120.06687 * 0.04589 * 24 23 22 26 26 C 1.38950 * 119.83572 * 0.27610 * 5 4 3 27 27 C 1.50708 * 120.04047 * 179.72840 * 26 5 4 28 28 C 1.38112 * 119.92022 * 359.40199 * 26 5 4 29 29 H 1.08998 * 109.47570 * 89.99712 * 1 2 3 30 30 H 1.08999 * 109.47237 * 210.00109 * 1 2 3 31 31 H 1.09001 * 109.46771 * 329.99785 * 1 2 3 32 32 H 1.08007 * 119.95624 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.04597 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47267 * 60.00312 * 7 6 5 35 35 H 1.08998 * 109.47200 * 299.99784 * 7 6 5 36 36 H 1.09001 * 109.46662 * 29.99759 * 11 10 8 37 37 H 1.08996 * 109.47318 * 150.00295 * 11 10 8 38 38 H 0.97000 * 119.99740 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.03797 * 359.70503 * 21 20 10 40 40 H 1.08000 * 119.96763 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.92771 * 179.97438 * 23 22 21 42 42 H 1.07992 * 119.96545 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.02967 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47216 * 89.99774 * 27 26 5 45 45 H 1.08997 * 109.47047 * 209.99956 * 27 26 5 46 46 H 1.08996 * 109.46735 * 329.99450 * 27 26 5 47 47 H 1.07996 * 119.95785 * 180.31892 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5775 1.2027 0.0005 5 6 4.2742 -0.0002 0.0005 6 16 6.0362 -0.0002 0.0019 7 6 6.4443 1.7673 0.0022 8 6 7.9418 1.9370 0.0027 9 8 8.6620 0.9668 0.1063 10 7 8.4805 3.1671 -0.1118 11 6 9.9338 3.3241 -0.2096 12 6 10.5170 3.4725 1.1721 13 1 9.8699 3.4523 2.0364 14 6 11.8768 3.6340 1.3326 15 7 12.6649 3.6590 0.2800 16 14 12.5998 3.8186 3.0452 17 1 12.2848 2.6099 3.8484 18 1 14.0729 3.9776 2.9461 19 1 12.0163 5.0156 3.7024 20 6 7.6518 4.2943 -0.1375 21 6 6.9250 4.6494 0.9914 22 6 6.1084 5.7629 0.9630 23 6 6.0136 6.5235 -0.1880 24 6 6.7362 6.1727 -1.3136 25 6 7.5546 5.0603 -1.2916 26 6 3.5777 -1.2025 -0.0058 27 6 4.3284 -2.5093 -0.0120 28 6 2.1966 -1.1986 0.0004 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6550 2.1330 0.0004 33 1 4.1157 2.1390 0.0010 34 1 6.0247 2.2369 0.8919 35 1 6.0261 2.2369 -0.8881 36 1 10.3624 2.4459 -0.6925 37 1 10.1646 4.2117 -0.7986 38 1 13.6215 3.7730 0.3930 39 1 6.9950 4.0531 1.8891 40 1 5.5426 6.0394 1.8404 41 1 5.3740 7.3935 -0.2077 42 1 6.6603 6.7690 -2.2107 43 1 8.1183 4.7867 -2.1712 44 1 4.5090 -2.8294 1.0141 45 1 3.7380 -3.2650 -0.5299 46 1 5.2813 -2.3784 -0.5249 47 1 1.6547 -2.1327 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002627751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = 13.341827 kcal Electronic energy + Delta-G solvation = -28173.357336 eV Core-core repulsion = 24411.946037 eV Total energy + Delta-G solvation = -3761.411299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.99694 -39.47048 -38.18752 -34.98235 -33.67712 -32.82643 -32.38263 -30.86508 -30.00349 -29.39147 -27.53614 -27.02350 -26.65780 -23.16021 -22.62417 -22.33840 -22.09339 -20.98472 -19.23052 -17.82188 -16.85812 -16.62816 -16.30277 -15.95844 -15.54520 -15.28349 -15.22172 -14.62163 -14.52099 -14.30111 -14.21281 -14.05340 -13.48535 -13.40065 -13.24432 -13.16720 -12.95621 -12.81313 -12.57671 -12.38912 -12.15124 -12.13800 -11.86094 -11.56718 -11.55162 -11.27316 -11.14899 -11.09043 -10.90377 -10.66624 -10.22106 -9.99544 -9.82354 -9.54601 -9.51580 -8.88976 -8.78485 -8.71069 -8.48159 -7.79661 -7.26302 -6.10259 -4.14972 1.09116 1.23446 1.43044 1.45932 1.55457 2.47500 3.06254 3.30278 3.34119 3.37486 3.51100 3.65032 3.93052 4.40743 4.58763 4.67771 4.72494 4.74748 5.02102 5.08441 5.09265 5.12411 5.14441 5.24920 5.26953 5.28914 5.33907 5.35526 5.47587 5.53958 5.57931 5.59149 5.71875 5.72649 5.83635 5.93358 6.07460 6.14123 6.16726 6.33524 6.43858 6.50699 6.64187 6.69226 6.81053 6.85541 7.10391 7.25022 7.35412 7.84203 8.11631 8.15897 8.67919 8.88484 9.49579 10.98206 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.002994 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.107929 B = 9349.664470 C =10999.375489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.106 4.106 4 C -0.128 4.128 5 C -0.104 4.104 6 S -0.027 6.027 7 C -0.151 4.151 8 C 0.531 3.469 9 O -0.505 6.505 10 N -0.555 5.555 11 C 0.250 3.750 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.160 3.840 21 C -0.127 4.127 22 C -0.109 4.109 23 C -0.133 4.133 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.064 4.064 27 C -0.118 4.118 28 C -0.105 4.105 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 -1.904 -2.699 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.152 4.152 5 C -0.218 4.218 6 S 0.218 5.782 7 C -0.302 4.302 8 C 0.316 3.684 9 O -0.380 6.380 10 N -0.283 5.283 11 C 0.133 3.867 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.068 3.932 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.152 4.152 24 C -0.127 4.127 25 C -0.144 4.144 26 C -0.070 4.070 27 C -0.175 4.175 28 C -0.124 4.124 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.139 -3.321 -2.708 22.550 hybrid contribution -0.358 1.586 0.994 1.906 sum -22.496 -1.735 -1.713 22.628 Atomic orbital electron populations 1.20754 0.91229 1.02623 1.02163 1.19875 0.95962 0.93096 1.00993 1.20882 0.93572 0.97555 1.00559 1.21183 0.94873 0.96540 1.02592 1.22072 0.98673 0.95969 1.05043 1.86134 0.95235 1.05592 1.91195 1.23992 0.99616 0.99395 1.07245 1.19332 0.87597 0.83675 0.77778 1.90743 1.61774 1.37895 1.47571 1.45904 1.09269 1.02546 1.70615 1.19487 0.70638 0.98501 0.98109 1.21291 0.92427 1.50562 0.92306 0.92403 1.24902 0.96756 0.94956 0.97271 1.69912 1.04667 1.49618 1.29065 0.86535 0.77888 0.78735 0.84193 1.20031 1.21074 1.20200 1.17756 0.92553 0.89800 0.93060 1.21373 0.98114 0.97914 0.97272 1.20978 0.98791 0.94910 0.98094 1.21078 1.00569 0.99994 0.93514 1.20985 0.96688 0.96519 0.98490 1.21322 0.99353 0.96140 0.97562 1.19497 0.93419 0.93726 1.00364 1.20818 1.00289 0.93491 1.02912 1.20820 0.92869 0.97594 1.01162 0.91330 0.91673 0.91660 0.86002 0.85894 0.86936 0.87289 0.93348 0.94430 0.92534 0.85936 0.86053 0.86298 0.85982 0.85644 0.90619 0.91257 0.90660 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.10 -0.94 5.88 -104.58 -0.62 -1.56 16 3 C -0.11 -1.11 9.69 -39.62 -0.38 -1.49 16 4 C -0.13 -1.55 9.36 -39.37 -0.37 -1.91 16 5 C -0.10 -1.40 6.11 -39.03 -0.24 -1.64 16 6 S -0.03 -0.42 19.28 -107.50 -2.07 -2.49 16 7 C -0.15 -2.38 3.48 36.01 0.13 -2.25 16 8 C 0.53 11.01 7.55 -10.98 -0.08 10.93 16 9 O -0.51 -12.52 15.50 5.56 0.09 -12.43 16 10 N -0.55 -11.75 2.51 -114.73 -0.29 -12.04 16 11 C 0.25 6.47 5.07 -5.19 -0.03 6.44 16 12 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 16 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.16 2.82 4.42 -83.69 -0.37 2.45 16 21 C -0.13 -1.97 8.46 -39.39 -0.33 -2.30 16 22 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 23 C -0.13 -1.56 10.04 -39.55 -0.40 -1.95 16 24 C -0.11 -1.36 10.04 -39.61 -0.40 -1.76 16 25 C -0.12 -1.92 9.64 -39.40 -0.38 -2.30 16 26 C -0.06 -0.76 5.90 -104.40 -0.62 -1.38 16 27 C -0.12 -1.23 9.57 36.01 0.34 -0.89 16 28 C -0.10 -1.07 9.35 -39.61 -0.37 -1.44 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 1.39 5.88 -52.49 -0.31 1.08 16 34 H 0.11 1.60 6.60 -51.93 -0.34 1.25 16 35 H 0.11 1.52 7.62 -51.92 -0.40 1.13 16 36 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 37 H 0.04 0.99 7.83 -51.93 -0.41 0.58 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.12 1.92 7.90 -52.49 -0.41 1.51 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.07 0.88 6.79 -51.93 -0.35 0.53 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -32.76 406.02 -11.80 -44.57 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.80 Total: 1.72 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -4.57 Total: -16.72 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.45 Total: -37.69 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.07 Total: -2.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.76 -11.80 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002627751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.910 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds