Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47087 * 2 1 4 4 C 1.38286 * 119.94232 * 90.00136 * 3 2 1 5 5 C 1.38140 * 120.07259 * 180.30114 * 4 3 2 6 6 C 1.38729 * 119.95126 * 359.44300 * 5 4 3 7 7 O 1.35922 * 120.05599 * 180.27914 * 6 5 4 8 8 C 1.42901 * 117.00179 * 0.27543 * 7 6 5 9 9 C 1.50699 * 109.47017 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00211 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99701 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00307 * 359.97438 * 11 9 8 13 13 C 1.46499 * 119.99842 * 180.02562 * 11 9 8 14 14 C 1.50704 * 109.47297 * 89.99788 * 13 11 9 15 15 H 1.07999 * 119.99424 * 0.02562 * 14 13 11 16 16 C 1.37876 * 119.99699 * 180.02562 * 14 13 11 17 17 N 1.31514 * 119.99475 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00412 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47211 * 90.00112 * 18 16 14 20 20 H 1.48502 * 109.47246 * 210.00324 * 18 16 14 21 21 H 1.48504 * 109.47167 * 329.99918 * 18 16 14 22 22 C 1.38781 * 119.88115 * 0.55361 * 6 5 4 23 23 Br 1.89103 * 120.03595 * 179.70231 * 22 6 5 24 24 C 1.38240 * 119.93893 * 270.01903 * 3 2 1 25 25 H 1.08998 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46729 * 300.00044 * 1 2 3 27 27 H 1.08998 * 109.47034 * 60.00266 * 1 2 3 28 28 H 1.09005 * 109.47170 * 239.99800 * 2 1 3 29 29 H 1.08998 * 109.47034 * 119.99734 * 2 1 3 30 30 H 1.08002 * 119.96057 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.02730 * 179.70393 * 5 4 3 32 32 H 1.08997 * 109.47239 * 300.00135 * 8 7 6 33 33 H 1.09002 * 109.46852 * 59.99551 * 8 7 6 34 34 H 1.09003 * 109.46971 * 89.99964 * 12 11 9 35 35 H 1.09000 * 109.47565 * 210.00072 * 12 11 9 36 36 H 1.08997 * 109.46910 * 330.00447 * 12 11 9 37 37 H 1.09001 * 109.47149 * 209.99788 * 13 11 9 38 38 H 1.09006 * 109.47235 * 329.99895 * 13 11 9 39 39 H 0.96999 * 120.00045 * 179.97438 * 17 16 14 40 40 H 1.07994 * 119.97980 * 359.96024 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0715 1.1983 5 6 2.7170 3.3760 1.2014 6 6 2.9538 4.0298 0.0010 7 8 3.4065 5.3115 0.0017 8 6 3.6225 5.9226 1.2752 9 6 4.1207 7.3312 1.0784 10 8 4.2750 7.7689 -0.0421 11 7 4.3947 8.1046 2.1476 12 6 4.2078 7.5761 3.5012 13 6 4.8784 9.4741 1.9564 14 6 3.7046 10.4171 1.8917 15 1 2.6989 10.0344 1.9843 16 6 3.9147 11.7681 1.7143 17 7 2.8903 12.5909 1.6574 18 14 5.6542 12.4297 1.5535 19 1 6.0524 12.4326 0.1229 20 1 5.7080 13.8153 2.0851 21 1 6.5851 11.5673 2.3247 22 6 2.7223 3.3749 -1.2004 23 35 3.0356 4.2649 -2.8393 24 6 2.2620 2.0714 -1.1979 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0823 1.5608 2.1327 31 1 2.8919 3.8851 2.1377 32 1 2.6859 5.9425 1.8323 33 1 4.3642 5.3497 1.8319 34 1 5.1302 7.1020 3.8367 35 1 3.9516 8.3916 4.1775 36 1 3.4026 6.8415 3.4963 37 1 5.5221 9.7520 2.7909 38 1 5.4436 9.5333 1.0262 39 1 3.0381 13.5415 1.5330 40 1 2.0818 1.5609 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002862316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = -42.435116 kcal Electronic energy + Delta-G solvation = -22725.127202 eV Core-core repulsion = 19165.850733 eV Total energy + Delta-G solvation = -3559.276469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55339 -39.14486 -37.75194 -35.01332 -33.99298 -32.60721 -32.30740 -29.91205 -29.69159 -28.62403 -27.39882 -25.89911 -23.96525 -23.16110 -22.08476 -21.00005 -18.76483 -18.48185 -17.04216 -16.74667 -16.26572 -15.96685 -15.76661 -15.27035 -14.71022 -14.59653 -14.17501 -13.96000 -13.79960 -13.60440 -13.19715 -12.99509 -12.62403 -12.48336 -12.40011 -12.23015 -12.10386 -11.58675 -11.49086 -11.36806 -11.14537 -11.06764 -10.91149 -10.79873 -10.55599 -10.18075 -10.09958 -9.58034 -9.11761 -9.04595 -8.61273 -8.25111 -7.82445 -6.11025 -4.10577 0.87192 1.07992 1.66635 2.72579 3.15280 3.28167 3.33017 3.33893 3.36404 3.90751 4.37557 4.39947 4.46677 4.62707 4.75540 4.87428 4.93378 5.00297 5.05254 5.08030 5.20070 5.22503 5.29013 5.42025 5.45856 5.55989 5.65969 5.71895 5.80174 5.88981 5.93274 6.04204 6.23963 6.39628 6.60035 6.86942 7.09284 7.24356 7.56451 8.07509 8.42601 8.81000 8.92212 9.48399 11.02304 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002764 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.815621 B =10128.555484 C =11278.453473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.204 4.204 6 C 0.158 3.842 7 O -0.272 6.272 8 C 0.041 3.959 9 C 0.509 3.491 10 O -0.510 6.510 11 N -0.595 5.595 12 C 0.079 3.921 13 C 0.217 3.783 14 C -0.532 4.532 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.123 4.123 23 Br -0.031 7.031 24 C -0.050 4.050 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -27.499 -0.441 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.124 4.124 4 C -0.080 4.080 5 C -0.223 4.223 6 C 0.109 3.891 7 O -0.183 6.183 8 C -0.038 4.038 9 C 0.293 3.707 10 O -0.385 6.385 11 N -0.329 5.329 12 C -0.065 4.065 13 C 0.097 3.903 14 C -0.570 4.570 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.203 4.203 23 Br 0.054 6.946 24 C -0.070 4.070 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.174 -26.561 -1.850 26.651 hybrid contribution 0.623 0.336 0.693 0.991 sum -0.551 -26.224 -1.157 26.256 Atomic orbital electron populations 1.21781 0.94739 1.01683 1.02421 1.20456 0.96137 0.91992 1.02914 1.19761 1.03087 0.97120 0.92445 1.20923 0.95679 0.93472 0.97897 1.21271 1.07465 0.96850 0.96762 1.18733 0.92971 0.84476 0.92897 1.86320 1.79086 1.22756 1.30156 1.22722 1.02148 0.94125 0.84806 1.19652 0.79678 0.85735 0.85647 1.90743 1.50912 1.73613 1.23221 1.47748 1.65424 1.15070 1.04626 1.21735 0.99904 0.99975 0.84855 1.19718 0.95932 0.77147 0.97463 1.21307 0.93702 0.91216 1.50801 0.90718 1.24856 0.97017 0.96733 0.94365 1.69894 1.30183 1.03716 1.49622 0.86846 0.85105 0.78485 0.79230 1.19812 1.21013 1.19043 1.21080 1.12074 0.96372 0.90819 1.96765 1.95290 1.78339 1.24192 1.20816 0.96030 0.91451 0.98731 0.92413 0.92493 0.92444 0.90991 0.90950 0.85228 0.84504 0.89123 0.89391 0.93277 0.90027 0.92386 0.94862 0.94352 0.92488 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.08 -0.48 6.06 -27.88 -0.17 -0.65 16 3 C -0.12 -1.08 5.13 -104.60 -0.54 -1.62 16 4 C -0.06 -0.53 9.69 -39.60 -0.38 -0.92 16 5 C -0.20 -2.14 9.04 -39.44 -0.36 -2.50 16 6 C 0.16 2.17 6.68 -39.20 -0.26 1.91 16 7 O -0.27 -4.56 9.01 -39.41 -0.35 -4.92 16 8 C 0.04 0.60 3.77 36.01 0.14 0.73 16 9 C 0.51 10.43 7.75 -10.99 -0.09 10.34 16 10 O -0.51 -13.09 16.08 -14.35 -0.23 -13.32 16 11 N -0.59 -11.92 2.86 -182.95 -0.52 -12.44 16 12 C 0.08 1.11 10.24 59.85 0.61 1.72 16 13 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 14 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 15 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 18 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 22 C -0.12 -1.63 6.24 -39.38 -0.25 -1.87 16 23 Br -0.03 -0.45 33.16 -68.01 -2.26 -2.70 16 24 C -0.05 -0.52 9.44 -39.58 -0.37 -0.89 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.04 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 1.15 6.30 -52.49 -0.33 0.82 16 32 H 0.09 1.12 6.91 -51.93 -0.36 0.76 16 33 H 0.09 0.99 7.64 -51.93 -0.40 0.59 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 37 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 38 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -35.57 357.41 -9.16 -44.73 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -5.53 Total: -4.14 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.76 Total: -2.56 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.25 Total: -39.32 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.59 Total: -18.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.26 Total: -2.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.57 -9.16 -44.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002862316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.296 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds