Wall clock time and date at job start Tue Mar 31 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99730 * 2 1 4 4 H 1.48503 * 109.47068 * 269.99894 * 3 2 1 5 5 H 1.48504 * 109.46969 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.47265 * 149.99562 * 3 2 1 7 7 C 1.40045 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99913 * 0.02562 * 7 2 1 10 10 O 1.21679 * 119.99956 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99680 * 179.97438 * 9 7 2 12 12 N 1.40104 * 119.99564 * 179.97438 * 11 9 7 13 13 C 1.34660 * 118.77994 * 75.00940 * 12 11 9 14 14 O 1.21615 * 119.81495 * 359.96995 * 13 12 11 15 15 C 1.47022 * 120.36696 * 179.97438 * 13 12 11 16 16 C 1.38731 * 122.27648 * 179.97438 * 15 13 12 17 17 C 1.38970 * 120.14799 * 180.02562 * 16 15 13 18 18 C 1.36562 * 121.60381 * 0.25868 * 17 16 15 19 19 C 1.40557 * 120.03060 * 359.49562 * 18 17 16 20 20 C 1.40606 * 122.18148 * 180.22053 * 19 18 17 21 21 N 1.48016 * 119.98244 * 0.28867 * 20 19 18 22 22 O 1.21801 * 119.99958 * 217.52081 * 21 20 19 23 23 O 1.21794 * 120.00304 * 37.52685 * 21 20 19 24 24 C 1.36525 * 120.03043 * 180.27302 * 20 19 18 25 25 C 1.39012 * 121.60418 * 0.02562 * 24 20 19 26 26 C 1.38683 * 120.15734 * 0.02562 * 25 24 20 27 27 C 1.41047 * 118.91063 * 0.48925 * 19 18 17 28 28 C 1.34657 * 118.78620 * 254.97786 * 12 11 9 29 29 O 1.21611 * 119.81790 * 0.03211 * 28 12 11 30 30 H 0.96988 * 120.00553 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00294 * 0.02562 * 11 9 7 32 32 H 1.07997 * 119.92684 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.19669 * 179.97438 * 17 16 15 34 34 H 1.07996 * 119.97885 * 179.71740 * 18 17 16 35 35 H 1.08003 * 119.19264 * 180.02562 * 24 20 19 36 36 H 1.08000 * 119.92216 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4404 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0584 -2.4805 0.0005 11 7 1.9493 -3.6476 0.0005 12 7 1.2488 -4.8610 0.0011 13 6 0.6598 -5.2701 -1.1387 14 8 0.7433 -4.5869 -2.1414 15 6 -0.0836 -6.5379 -1.1776 16 6 -0.7057 -6.9968 -2.3295 17 6 -1.3975 -8.2020 -2.3163 18 6 -1.4913 -8.9610 -1.1849 19 6 -0.8708 -8.5342 0.0019 20 6 -0.9344 -9.2819 1.1910 21 7 -1.6677 -10.5673 1.2181 22 8 -2.3115 -10.8805 2.2035 23 8 -1.6273 -11.3120 0.2552 24 6 -0.3199 -8.8229 2.3204 25 6 0.3776 -7.6204 2.3328 26 6 0.4631 -6.8527 1.1811 27 6 -0.1656 -7.3127 0.0014 28 6 1.1900 -5.5752 1.1411 29 8 1.7396 -5.1605 2.1435 30 1 -0.4850 0.8399 -0.0004 31 1 2.9192 -3.6475 0.0009 32 1 -0.6523 -6.4162 -3.2386 33 1 -1.8765 -8.5445 -3.2217 34 1 -2.0394 -9.8913 -1.2031 35 1 -0.3770 -9.4083 3.2262 36 1 0.8540 -7.2833 3.2416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003045368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:00 Heat of formation + Delta-G solvation = -27.440887 kcal Electronic energy + Delta-G solvation = -30721.348358 eV Core-core repulsion = 26140.209185 eV Total energy + Delta-G solvation = -4581.139173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.073 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.70616 -43.09858 -41.16882 -40.37767 -39.07847 -38.04883 -37.60624 -36.72166 -35.27402 -34.71780 -32.78242 -31.93209 -31.46152 -28.76166 -28.14381 -26.33554 -24.97563 -24.73935 -24.35590 -22.70975 -21.12644 -20.51847 -20.08262 -19.93187 -19.41478 -19.10598 -18.72408 -18.46663 -17.88673 -17.42895 -17.12623 -16.79250 -16.21219 -16.00118 -15.96921 -15.46919 -15.45586 -15.10219 -14.79775 -14.69731 -14.65137 -14.39401 -13.58076 -13.39357 -12.95046 -12.87320 -12.82831 -12.79117 -12.66568 -12.52261 -12.31880 -12.08562 -11.95459 -11.85329 -11.78981 -11.46700 -11.04635 -10.34261 -10.29261 -10.14229 -9.79970 -8.46870 -7.07307 -2.09954 -0.76847 -0.66469 -0.12069 -0.01315 0.41912 0.49853 1.37690 1.38051 1.39188 1.56382 1.65292 2.19481 2.21460 2.41018 2.49762 2.77348 2.81894 2.99028 3.07317 3.19277 3.41946 3.44906 3.66516 3.78918 3.86185 4.06486 4.15564 4.18321 4.42290 4.59616 4.71533 4.85153 4.91511 5.12094 5.17758 5.29103 5.42057 5.43123 5.56281 5.97064 6.07963 6.33383 6.59073 6.67844 7.03151 8.18846 8.48279 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.002879 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.325737 B = 9722.481451 C =10499.064931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.028 3.972 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.545 3.455 10 O -0.613 6.613 11 N -0.548 5.548 12 N -0.361 5.361 13 C 0.559 3.441 14 O -0.506 6.506 15 C -0.161 4.161 16 C 0.007 3.993 17 C -0.091 4.091 18 C -0.064 4.064 19 C -0.039 4.039 20 C 0.009 3.991 21 N 0.025 4.975 22 O -0.148 6.148 23 O -0.142 6.142 24 C -0.034 4.034 25 C -0.002 4.002 26 C -0.111 4.111 27 C -0.001 4.001 28 C 0.558 3.442 29 O -0.499 6.499 30 H 0.280 0.720 31 H 0.418 0.582 32 H 0.160 0.840 33 H 0.195 0.805 34 H 0.176 0.824 35 H 0.200 0.800 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -21.557 -0.005 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.188 4.188 3 Si 0.829 3.171 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.167 1.167 7 C -0.591 4.591 8 H 0.118 0.882 9 C 0.352 3.648 10 O -0.496 6.496 11 N -0.302 5.302 12 N -0.189 5.189 13 C 0.352 3.648 14 O -0.379 6.379 15 C -0.166 4.166 16 C -0.012 4.012 17 C -0.108 4.108 18 C -0.081 4.081 19 C -0.040 4.040 20 C -0.073 4.073 21 N 0.549 4.451 22 O -0.366 6.366 23 O -0.361 6.361 24 C -0.053 4.053 25 C -0.021 4.021 26 C -0.115 4.115 27 C -0.003 4.003 28 C 0.349 3.651 29 O -0.372 6.372 30 H 0.090 0.910 31 H 0.260 0.740 32 H 0.178 0.822 33 H 0.212 0.788 34 H 0.193 0.807 35 H 0.217 0.783 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.006 -20.249 -0.015 20.274 hybrid contribution 0.624 0.883 0.003 1.081 sum -0.382 -19.365 -0.012 19.369 Atomic orbital electron populations 1.70163 1.09730 1.29677 1.34846 1.27120 0.95717 1.05117 0.90843 0.84821 0.78716 0.73880 0.79677 1.18332 1.19409 1.16745 1.21238 0.95222 0.87924 1.54703 0.88224 1.19222 0.87454 0.82271 0.75881 1.90568 1.15872 1.86118 1.57067 1.45963 1.07115 0.93373 1.83730 1.45571 1.47702 1.14456 1.11213 1.19046 0.77932 0.86027 0.81827 1.90809 1.57596 1.55677 1.33806 1.19444 1.06310 0.94050 0.96763 1.21903 0.87992 0.94875 0.96429 1.21472 0.97025 0.91665 1.00647 1.22006 0.95195 1.00611 0.90316 1.17198 0.99857 0.92977 0.93953 1.21043 1.02587 0.86677 0.96985 1.43509 0.99473 1.01806 1.00353 1.94610 1.38927 1.79007 1.24006 1.94522 1.66940 1.47896 1.26701 1.21107 0.91542 0.94914 0.97718 1.21577 0.92841 0.90153 0.97574 1.19887 1.01147 0.94008 0.96461 1.17721 0.96540 0.93733 0.92284 1.18924 0.79924 0.84392 0.81833 1.90808 1.43747 1.70202 1.32478 0.90989 0.74037 0.82214 0.78808 0.80723 0.78259 0.79326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.10 11.83 21.83 0.26 -49.84 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.01 40.62 29.56 68.60 2.03 42.65 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.24 -9.04 7.11 99.48 0.71 -8.33 16 7 C -0.55 -31.84 9.54 24.83 0.24 -31.60 16 8 H 0.10 5.04 7.85 -2.91 -0.02 5.02 16 9 C 0.54 33.14 7.42 86.36 0.64 33.79 16 10 O -0.61 -42.52 15.10 -4.28 -0.06 -42.59 16 11 N -0.55 -27.57 4.96 -176.63 -0.88 -28.44 16 12 N -0.36 -16.16 2.85 -433.60 -1.24 -17.40 16 13 C 0.56 23.65 7.33 86.56 0.63 24.28 16 14 O -0.51 -24.83 16.46 -4.08 -0.07 -24.90 16 15 C -0.16 -4.89 5.88 -20.10 -0.12 -5.01 16 16 C 0.01 0.15 9.65 22.56 0.22 0.36 16 17 C -0.09 -1.22 9.91 22.05 0.22 -1.00 16 18 C -0.06 -0.96 9.23 22.44 0.21 -0.75 16 19 C -0.04 -0.77 5.72 -21.45 -0.12 -0.89 16 20 C 0.01 0.16 6.50 36.55 0.24 0.40 16 21 N 0.03 0.46 4.30 -46.04 -0.20 0.26 16 22 O -0.15 -2.86 18.90 18.88 0.36 -2.50 16 23 O -0.14 -2.59 16.56 18.89 0.31 -2.27 16 24 C -0.03 -0.47 9.54 22.05 0.21 -0.26 16 25 C 0.00 -0.04 9.65 22.56 0.22 0.18 16 26 C -0.11 -3.07 5.88 -20.10 -0.12 -3.19 16 27 C 0.00 -0.03 5.76 -21.06 -0.12 -0.15 16 28 C 0.56 21.55 7.73 86.57 0.67 22.22 16 29 O -0.50 -21.02 16.75 -4.07 -0.07 -21.09 16 30 H 0.28 15.44 8.29 -92.72 -0.77 14.67 16 31 H 0.42 18.26 8.81 -213.32 -1.88 16.38 16 32 H 0.16 3.31 7.76 -2.91 -0.02 3.28 16 33 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.18 2.00 5.89 -2.91 -0.02 1.98 16 35 H 0.20 1.31 7.96 -2.91 -0.02 1.29 16 36 H 0.19 2.74 7.76 -2.91 -0.02 2.72 16 Total: -1.00 -89.92 336.22 3.26 -86.65 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -0.66 Total: 19.04 kcal Atomic # 6 Polarization: 36.96 SS G_CDS: 3.48 Total: 40.43 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -2.05 Total: -95.43 kcal Atomic # 8 Polarization: -93.82 SS G_CDS: 0.47 Total: -93.35 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -89.92 3.26 -86.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003045368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.212 kcal (2) G-P(sol) polarization free energy of solvation -89.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds