Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47075 * 2 1 4 4 C 1.34852 * 116.99889 * 179.97438 * 3 2 1 5 5 O 1.21602 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.46781 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.43199 * 119.99936 * 0.02562 * 6 4 3 8 8 N 5.00585 * 99.40063 * 359.97438 * 2 1 3 9 9 C 1.38189 * 119.99911 * 179.97438 * 6 4 3 10 10 C 1.41706 * 119.99877 * 172.99875 * 9 6 4 11 11 C 1.38704 * 126.90424 * 342.84057 * 10 9 6 12 12 N 1.34020 * 107.84329 * 180.02562 * 11 10 9 13 13 C 1.46498 * 125.06938 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47307 * 124.99891 * 13 12 11 15 15 H 1.07994 * 120.00028 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00035 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00054 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47170 * 60.00246 * 18 16 14 20 20 H 1.48499 * 109.47406 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47100 * 300.00328 * 18 16 14 22 22 N 1.39732 * 109.86123 * 359.76933 * 12 11 10 23 23 C 1.31547 * 109.22630 * 0.39773 * 22 12 11 24 24 C 1.47544 * 126.56350 * 179.87916 * 23 22 12 25 25 C 1.36102 * 125.94361 * 324.69274 * 24 23 22 26 26 C 1.40857 * 106.73121 * 179.97438 * 25 24 23 27 27 C 1.34785 * 107.05253 * 0.26312 * 26 25 24 28 28 C 1.50702 * 125.65930 * 179.70618 * 27 26 25 29 29 O 1.34303 * 108.69078 * 359.56894 * 27 26 25 30 30 H 1.08995 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47392 * 300.00671 * 1 2 3 32 32 H 1.09004 * 109.46857 * 60.00145 * 1 2 3 33 33 H 1.08998 * 109.47534 * 239.99859 * 2 1 3 34 34 H 1.09004 * 109.46857 * 119.99855 * 2 1 3 35 35 H 1.07996 * 120.00206 * 352.99302 * 9 6 4 36 36 H 1.08003 * 126.07363 * 0.06145 * 11 10 9 37 37 H 1.09004 * 109.47016 * 245.00044 * 13 12 11 38 38 H 1.08995 * 109.47225 * 4.99733 * 13 12 11 39 39 H 0.97003 * 120.00084 * 179.97438 * 17 16 14 40 40 H 1.07996 * 126.63372 * 0.03192 * 25 24 23 41 41 H 1.07998 * 126.47570 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.47326 * 89.98861 * 28 27 26 43 43 H 1.08999 * 109.47099 * 209.99719 * 28 27 26 44 44 H 1.09007 * 109.46256 * 329.99276 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3509 1.5457 0.0005 5 8 4.0917 0.5813 0.0015 6 6 3.9119 2.9021 0.0000 7 6 3.0396 4.0377 -0.0005 8 7 2.3476 4.9386 -0.0022 9 6 5.2819 3.0831 0.0011 10 6 5.8249 4.3834 -0.1490 11 6 5.1708 5.5089 -0.6277 12 7 6.0404 6.5285 -0.6083 13 6 5.7419 7.8976 -1.0360 14 6 6.0671 8.8551 0.0814 15 1 6.4574 8.4813 1.0163 16 6 5.8673 10.2084 -0.0904 17 7 5.3924 10.6637 -1.2292 18 14 6.2710 11.3954 1.2943 19 1 7.7121 11.2861 1.6356 20 1 5.9683 12.7831 0.8608 21 1 5.4529 11.0605 2.4876 22 7 7.2724 6.0924 -0.1139 23 6 7.1956 4.8105 0.1710 24 6 8.2757 3.9645 0.7136 25 6 9.5999 4.0722 0.4180 26 6 10.2627 3.0718 1.1556 27 6 9.3211 2.4057 1.8532 28 6 9.5717 1.2436 2.7793 29 8 8.1228 2.9513 1.5883 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9388 2.2336 0.1164 36 1 4.1432 5.5554 -0.9570 37 1 6.3425 8.1437 -1.9118 38 1 4.6842 7.9775 -1.2867 39 1 5.2515 11.6158 -1.3500 40 1 10.0545 4.7870 -0.2517 41 1 11.3241 2.8728 1.1579 42 1 9.7530 1.6152 3.7878 43 1 8.7005 0.5887 2.7845 44 1 10.4432 0.6864 2.4353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003219178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = 46.113852 kcal Electronic energy + Delta-G solvation = -29956.683577 eV Core-core repulsion = 25650.400165 eV Total energy + Delta-G solvation = -4306.283411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55270 -40.90764 -40.27516 -37.06660 -36.49369 -34.54797 -33.57781 -33.19948 -32.72378 -31.89119 -31.22909 -29.58945 -28.12964 -26.45125 -24.91159 -23.56687 -22.91234 -22.04927 -21.61993 -21.08656 -20.29504 -19.78558 -18.63311 -17.10316 -16.84155 -16.63583 -16.54979 -16.24841 -15.85241 -15.30470 -14.82120 -14.72947 -14.32971 -14.28355 -14.01926 -13.84445 -13.39968 -13.29384 -13.21063 -13.14735 -12.93007 -12.87123 -12.72910 -12.49758 -12.42410 -12.09255 -12.07094 -11.99686 -11.73584 -11.68592 -11.19701 -10.98952 -10.70581 -10.63082 -10.56841 -10.42087 -10.21290 -10.10076 -9.86159 -9.35921 -8.77490 -8.23805 -7.72757 -6.42027 -4.49575 0.33255 1.35978 2.14990 2.35487 2.43431 2.53441 2.58677 2.95845 3.08837 3.17578 3.21169 3.22691 3.28782 3.74541 4.10285 4.17674 4.31729 4.57794 4.74478 4.75946 4.79237 4.85521 4.95317 4.99931 5.08631 5.12961 5.23607 5.28626 5.32542 5.39890 5.52177 5.53744 5.58553 5.72717 5.76743 5.89392 5.95687 5.98847 6.13561 6.32817 6.39336 6.47869 6.61662 6.74218 7.09234 7.20337 7.51819 7.60387 7.62802 7.83470 7.91116 8.55545 9.17693 10.67018 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.006697 B = 0.003464 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4180.068534 B = 8082.264862 C =11639.931762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.534 3.466 5 O -0.517 6.517 6 C -0.193 4.193 7 C 0.269 3.731 8 N -0.426 5.426 9 C 0.172 3.828 10 C -0.287 4.287 11 C 0.123 3.877 12 N -0.293 5.293 13 C 0.245 3.755 14 C -0.540 4.540 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.890 5.890 18 Si 0.911 3.089 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.273 1.273 22 N -0.236 5.236 23 C 0.166 3.834 24 C 0.057 3.943 25 C -0.158 4.158 26 C -0.212 4.212 27 C -0.003 4.003 28 C -0.074 4.074 29 O -0.163 6.163 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.188 0.812 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.271 0.729 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -21.538 2.849 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.272 6.272 4 C 0.381 3.619 5 O -0.407 6.407 6 C -0.200 4.200 7 C -0.044 4.044 8 N -0.103 5.103 9 C 0.147 3.853 10 C -0.298 4.298 11 C -0.034 4.034 12 N -0.066 5.066 13 C 0.129 3.871 14 C -0.578 4.578 15 H 0.090 0.910 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.738 3.262 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.198 1.198 22 N -0.056 5.056 23 C -0.002 4.002 24 C 0.005 3.995 25 C -0.179 4.179 26 C -0.231 4.231 27 C -0.054 4.054 28 C -0.130 4.130 29 O -0.059 6.059 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.204 0.796 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.314 -19.098 2.779 19.344 hybrid contribution -0.029 -0.254 0.521 0.580 sum 1.285 -19.351 3.300 19.673 Atomic orbital electron populations 1.21811 0.92800 1.02797 1.03668 1.23006 0.95214 0.80109 1.02648 1.86633 1.23861 1.32208 1.84498 1.20198 0.80516 0.88608 0.72619 1.90865 1.60259 1.41620 1.47999 1.16692 0.90391 0.85626 1.27264 1.25224 0.93003 0.92722 0.93459 1.81307 1.08514 1.10131 1.10369 1.21224 0.91827 0.95425 0.76789 1.19141 0.94238 0.94616 1.21832 1.23968 0.97049 0.87071 0.95278 1.49549 1.05423 1.11129 1.40454 1.20188 0.98637 0.70613 0.97642 1.21081 1.45924 0.90948 0.99835 0.91043 1.24924 0.94193 0.98033 0.96500 1.69893 1.43380 1.15372 1.24040 0.86320 0.79299 0.79173 0.81426 1.19698 1.20802 1.19832 1.77586 1.03438 1.08667 1.15927 1.20350 0.89941 0.90736 0.99175 1.18539 0.92037 0.92003 0.96881 1.21847 0.91615 1.01189 1.03220 1.21501 1.00393 0.99172 1.02039 1.22555 0.82073 0.99023 1.01792 1.20337 1.03326 0.92553 0.96812 1.84014 1.32709 1.39067 1.50085 0.90283 0.91479 0.91462 0.91112 0.91121 0.82624 0.79559 0.92360 0.91714 0.91901 0.82722 0.83096 0.90001 0.90270 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.35 -4.63 9.76 -40.91 -0.40 -5.03 16 4 C 0.53 7.43 7.87 34.18 0.27 7.70 16 5 O -0.52 -7.65 16.10 -19.34 -0.31 -7.96 16 6 C -0.19 -2.76 5.89 -104.54 -0.62 -3.38 16 7 C 0.27 4.36 11.68 -22.47 -0.26 4.10 16 8 N -0.43 -7.73 17.37 41.84 0.73 -7.01 16 9 C 0.17 2.41 9.48 -38.28 -0.36 2.05 16 10 C -0.29 -4.78 5.94 -104.81 -0.62 -5.40 16 11 C 0.12 2.27 9.91 -16.42 -0.16 2.11 16 12 N -0.29 -6.22 3.62 -61.86 -0.22 -6.45 16 13 C 0.25 5.84 6.20 -5.19 -0.03 5.81 16 14 C -0.54 -14.35 9.20 -34.44 -0.32 -14.66 16 15 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 18 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 N -0.24 -4.91 12.29 34.54 0.42 -4.49 16 23 C 0.17 2.97 7.30 -80.61 -0.59 2.38 16 24 C 0.06 0.89 7.09 -36.56 -0.26 0.63 16 25 C -0.16 -2.19 10.85 -39.36 -0.43 -2.62 16 26 C -0.21 -2.41 10.78 -39.82 -0.43 -2.84 16 27 C 0.00 -0.03 7.32 -35.53 -0.26 -0.29 16 28 C -0.07 -0.52 10.41 36.01 0.37 -0.14 16 29 O -0.16 -2.32 10.67 4.57 0.05 -2.27 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.16 1.94 7.61 -52.49 -0.40 1.54 16 36 H 0.19 3.29 4.99 -52.48 -0.26 3.03 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -30.62 401.96 -6.42 -37.03 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.27 Total: 0.65 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -3.18 Total: -2.76 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 1.66 Total: -41.55 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.66 Total: -15.26 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.62 -6.42 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.145 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds