Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47075 * 2 1 4 4 C 1.34852 * 116.99889 * 179.97438 * 3 2 1 5 5 O 1.21602 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.46781 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.43199 * 119.99936 * 0.02562 * 6 4 3 8 8 N 5.00585 * 99.40063 * 359.97438 * 2 1 3 9 9 C 1.38189 * 119.99911 * 179.97438 * 6 4 3 10 10 C 1.41706 * 119.99877 * 172.99875 * 9 6 4 11 11 C 1.38704 * 126.90424 * 342.84057 * 10 9 6 12 12 N 1.34020 * 107.84329 * 180.02562 * 11 10 9 13 13 C 1.46498 * 125.06938 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47307 * 124.99891 * 13 12 11 15 15 H 1.07994 * 120.00028 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00035 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00054 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47170 * 60.00246 * 18 16 14 20 20 H 1.48499 * 109.47406 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47100 * 300.00328 * 18 16 14 22 22 N 1.39732 * 109.86123 * 359.76933 * 12 11 10 23 23 C 1.31547 * 109.22630 * 0.39773 * 22 12 11 24 24 C 1.47544 * 126.56350 * 179.87916 * 23 22 12 25 25 C 1.36102 * 125.94361 * 324.69274 * 24 23 22 26 26 C 1.40857 * 106.73121 * 179.97438 * 25 24 23 27 27 C 1.34785 * 107.05253 * 0.26312 * 26 25 24 28 28 C 1.50702 * 125.65930 * 179.70618 * 27 26 25 29 29 O 1.34303 * 108.69078 * 359.56894 * 27 26 25 30 30 H 1.08995 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47392 * 300.00671 * 1 2 3 32 32 H 1.09004 * 109.46857 * 60.00145 * 1 2 3 33 33 H 1.08998 * 109.47534 * 239.99859 * 2 1 3 34 34 H 1.09004 * 109.46857 * 119.99855 * 2 1 3 35 35 H 1.07996 * 120.00206 * 352.99302 * 9 6 4 36 36 H 1.08003 * 126.07363 * 0.06145 * 11 10 9 37 37 H 1.09004 * 109.47016 * 245.00044 * 13 12 11 38 38 H 1.08995 * 109.47225 * 4.99733 * 13 12 11 39 39 H 0.97003 * 120.00084 * 179.97438 * 17 16 14 40 40 H 1.07996 * 126.63372 * 0.03192 * 25 24 23 41 41 H 1.07998 * 126.47570 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.47326 * 89.98861 * 28 27 26 43 43 H 1.08999 * 109.47099 * 209.99719 * 28 27 26 44 44 H 1.09007 * 109.46256 * 329.99276 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3509 1.5457 0.0005 5 8 4.0917 0.5813 0.0015 6 6 3.9119 2.9021 0.0000 7 6 3.0396 4.0377 -0.0005 8 7 2.3476 4.9386 -0.0022 9 6 5.2819 3.0831 0.0011 10 6 5.8249 4.3834 -0.1490 11 6 5.1708 5.5089 -0.6277 12 7 6.0404 6.5285 -0.6083 13 6 5.7419 7.8976 -1.0360 14 6 6.0671 8.8551 0.0814 15 1 6.4574 8.4813 1.0163 16 6 5.8673 10.2084 -0.0904 17 7 5.3924 10.6637 -1.2292 18 14 6.2710 11.3954 1.2943 19 1 7.7121 11.2861 1.6356 20 1 5.9683 12.7831 0.8608 21 1 5.4529 11.0605 2.4876 22 7 7.2724 6.0924 -0.1139 23 6 7.1956 4.8105 0.1710 24 6 8.2757 3.9645 0.7136 25 6 9.5999 4.0722 0.4180 26 6 10.2627 3.0718 1.1556 27 6 9.3211 2.4057 1.8532 28 6 9.5717 1.2436 2.7793 29 8 8.1228 2.9513 1.5883 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9388 2.2336 0.1164 36 1 4.1432 5.5554 -0.9570 37 1 6.3425 8.1437 -1.9118 38 1 4.6842 7.9775 -1.2867 39 1 5.2515 11.6158 -1.3500 40 1 10.0545 4.7870 -0.2517 41 1 11.3241 2.8728 1.1579 42 1 9.7530 1.6152 3.7878 43 1 8.7005 0.5887 2.7845 44 1 10.4432 0.6864 2.4353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003219178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = 30.665525 kcal Electronic energy + Delta-G solvation = -29957.353466 eV Core-core repulsion = 25650.400165 eV Total energy + Delta-G solvation = -4306.953301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.57166 -42.33359 -41.37517 -38.34029 -37.63194 -36.16774 -35.07952 -34.33394 -34.04322 -32.66526 -32.37606 -30.97849 -29.64081 -27.58156 -26.37328 -24.87001 -24.02270 -23.24173 -22.68523 -22.25964 -21.61241 -20.95311 -19.84885 -18.82004 -18.29665 -17.75743 -17.53879 -17.34539 -17.23988 -16.63024 -16.40788 -16.10497 -15.75685 -15.30644 -15.23497 -14.87703 -14.75168 -14.51913 -14.35311 -14.09809 -13.92879 -13.83581 -13.77229 -13.71864 -13.61677 -13.54149 -13.14185 -13.00539 -12.91074 -12.80447 -12.64624 -12.47053 -12.41256 -12.11969 -11.92539 -11.71803 -11.49937 -11.45290 -11.13248 -10.83287 -10.71359 -9.43725 -9.00656 -8.44652 -6.59905 -0.90633 0.17637 0.82878 1.08761 1.28475 1.33925 1.35218 1.40589 1.42208 1.44971 1.73392 1.83170 2.04797 2.27648 2.46849 2.82567 2.88702 3.09512 3.30225 3.67297 3.77178 3.91860 4.05210 4.06020 4.08523 4.11407 4.14033 4.42073 4.57349 4.60021 4.64723 4.68639 4.76304 4.82830 4.84275 4.89342 4.91269 4.95658 5.07580 5.14089 5.16791 5.26068 5.39623 5.43133 5.59895 5.62381 5.68520 6.07726 6.35244 6.38439 6.51016 6.69909 7.10647 8.63683 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.006697 B = 0.003464 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4180.068534 B = 8082.264862 C =11639.931762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.541 3.459 5 O -0.522 6.522 6 C -0.181 4.181 7 C 0.282 3.718 8 N -0.460 5.460 9 C 0.183 3.817 10 C -0.278 4.278 11 C 0.115 3.885 12 N -0.317 5.317 13 C 0.261 3.739 14 C -0.556 4.556 15 H 0.057 0.943 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.971 3.029 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.272 1.272 22 N -0.278 5.278 23 C 0.177 3.823 24 C 0.016 3.984 25 C -0.153 4.153 26 C -0.218 4.218 27 C 0.009 3.991 28 C -0.075 4.075 29 O -0.174 6.174 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.275 0.725 40 H 0.153 0.847 41 H 0.183 0.817 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -24.368 4.340 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.283 6.283 4 C 0.388 3.612 5 O -0.413 6.413 6 C -0.188 4.188 7 C -0.031 4.031 8 N -0.139 5.139 9 C 0.160 3.840 10 C -0.290 4.290 11 C -0.040 4.040 12 N -0.090 5.090 13 C 0.143 3.857 14 C -0.594 4.594 15 H 0.075 0.925 16 C -0.178 4.178 17 N -0.554 5.554 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.197 1.197 22 N -0.098 5.098 23 C 0.009 3.991 24 C -0.034 4.034 25 C -0.174 4.174 26 C -0.237 4.237 27 C -0.042 4.042 28 C -0.131 4.131 29 O -0.070 6.070 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.197 0.803 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.171 0.829 41 H 0.200 0.800 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.182 -21.956 4.264 22.472 hybrid contribution -0.284 0.354 0.107 0.466 sum 1.899 -21.602 4.371 22.121 Atomic orbital electron populations 1.21849 0.91115 1.04458 1.03242 1.23373 0.96571 0.78445 1.03452 1.86631 1.23064 1.34560 1.84065 1.19940 0.80956 0.87930 0.72423 1.90863 1.60557 1.41604 1.48308 1.16803 0.90175 0.85570 1.26242 1.25510 0.92469 0.92524 0.92552 1.81317 1.09809 1.11200 1.11526 1.21297 0.91872 0.94750 0.76127 1.19295 0.93812 0.95032 1.20832 1.24119 0.97025 0.87151 0.95702 1.49150 1.06400 1.10682 1.42744 1.19679 0.97563 0.72054 0.96374 1.21264 1.46076 0.92002 1.00027 0.92509 1.25713 0.93905 0.99457 0.98696 1.69970 1.44001 1.15893 1.25493 0.85410 0.79041 0.77524 0.78612 1.19379 1.19555 1.19690 1.77501 1.03648 1.10447 1.18250 1.20696 0.90858 0.90036 0.97496 1.18363 0.91893 0.93683 0.99503 1.22101 0.91369 1.01294 1.02653 1.21850 1.01982 0.98329 1.01516 1.23533 0.81005 0.98885 1.00826 1.20617 1.04819 0.91113 0.96507 1.84004 1.34288 1.38784 1.49928 0.87556 0.91902 0.91874 0.90326 0.90312 0.80309 0.79301 0.94060 0.92580 0.91541 0.82889 0.79976 0.88579 0.89565 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.29 71.98 0.74 -1.15 16 2 C 0.05 0.94 6.20 71.98 0.45 1.38 16 3 O -0.37 -9.01 9.76 -57.66 -0.56 -9.58 16 4 C 0.54 14.15 7.87 70.06 0.55 14.70 16 5 O -0.52 -14.26 16.10 19.50 0.31 -13.95 16 6 C -0.18 -5.01 5.89 -19.81 -0.12 -5.12 16 7 C 0.28 9.15 11.68 88.33 1.03 10.19 16 8 N -0.46 -17.04 17.37 19.00 0.33 -16.71 16 9 C 0.18 4.96 9.48 23.12 0.22 5.18 16 10 C -0.28 -9.39 5.94 -19.99 -0.12 -9.51 16 11 C 0.12 4.42 9.91 84.47 0.84 5.26 16 12 N -0.32 -14.21 3.62 -349.64 -1.26 -15.48 16 13 C 0.26 13.21 6.20 85.63 0.53 13.74 16 14 C -0.56 -30.81 9.20 25.60 0.24 -30.57 16 15 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 16 C 0.02 1.30 5.46 84.65 0.46 1.76 16 17 N -0.92 -51.37 13.29 21.45 0.28 -51.09 16 18 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 N -0.28 -12.14 12.29 -44.63 -0.55 -12.69 16 23 C 0.18 6.49 7.30 43.97 0.32 6.81 16 24 C 0.02 0.51 7.09 24.23 0.17 0.68 16 25 C -0.15 -4.14 10.85 22.41 0.24 -3.90 16 26 C -0.22 -4.39 10.78 22.12 0.24 -4.15 16 27 C 0.01 0.18 7.32 24.89 0.18 0.36 16 28 C -0.07 -0.74 10.41 71.24 0.74 0.00 16 29 O -0.17 -4.66 10.67 -6.58 -0.07 -4.73 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.18 4.08 7.61 -2.91 -0.02 4.06 16 36 H 0.19 7.00 4.99 -2.91 -0.01 6.98 16 37 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.06 2.87 8.04 -2.39 -0.02 2.86 16 39 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -68.28 401.96 8.28 -60.01 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.05 Total: 13.20 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.72 Total: 5.66 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -1.20 Total: -95.97 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.32 Total: -28.25 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.28 8.28 -60.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.671 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds