Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00314 * 2 1 4 4 H 1.48500 * 109.47051 * 240.00206 * 3 2 1 5 5 H 1.48504 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47552 * 119.99445 * 3 2 1 7 7 C 1.37875 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00307 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47481 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99993 * 270.00007 * 10 9 7 12 12 O 1.21281 * 119.99771 * 4.43709 * 11 10 9 13 13 C 1.50697 * 120.00004 * 184.43520 * 11 10 9 14 14 O 1.42904 * 109.47353 * 174.73120 * 13 11 10 15 15 C 1.34990 * 117.00425 * 180.02562 * 14 13 11 16 16 O 1.21718 * 119.99738 * 359.97438 * 15 14 13 17 17 C 1.41282 * 120.00370 * 179.97438 * 15 14 13 18 18 C 1.35753 * 120.00126 * 179.97438 * 17 15 14 19 19 C 1.41529 * 119.99934 * 180.02562 * 18 17 15 20 20 C 1.38005 * 126.10710 * 179.97438 * 19 18 17 21 21 C 1.40285 * 106.52461 * 180.02562 * 20 19 18 22 22 C 1.35175 * 107.21046 * 0.02562 * 21 20 19 23 23 O 1.34011 * 109.04412 * 359.73786 * 22 21 20 24 24 C 1.39926 * 119.99961 * 89.99804 * 10 9 7 25 25 C 1.38871 * 120.07198 * 246.72435 * 24 10 9 26 26 C 1.38108 * 119.92665 * 180.23358 * 25 24 10 27 27 C 1.38284 * 120.07359 * 359.47421 * 26 25 24 28 28 C 1.38281 * 120.13767 * 0.54547 * 27 26 25 29 29 C 1.38116 * 120.07107 * 359.71201 * 28 27 26 30 30 H 0.97010 * 119.99700 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46991 * 59.99374 * 9 7 2 32 32 H 1.09004 * 109.46859 * 300.00394 * 9 7 2 33 33 H 1.08997 * 109.47556 * 294.73128 * 13 11 10 34 34 H 1.08999 * 109.47263 * 54.73187 * 13 11 10 35 35 H 1.08000 * 119.99421 * 0.02562 * 17 15 14 36 36 H 1.08000 * 120.00453 * 0.02562 * 18 17 15 37 37 H 1.07999 * 126.73474 * 0.03341 * 20 19 18 38 38 H 1.07994 * 126.39067 * 179.97438 * 21 20 19 39 39 H 1.07999 * 125.47950 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03610 * 359.95665 * 25 24 10 41 41 H 1.08004 * 119.96051 * 179.72519 * 26 25 24 42 42 H 1.08002 * 119.92826 * 180.25968 * 27 26 25 43 43 H 1.08002 * 119.96276 * 179.72401 * 28 27 26 44 44 H 1.08001 * 120.03471 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6408 -4.1249 -1.1667 12 8 2.3103 -3.6132 -2.2154 13 6 3.5412 -5.3334 -1.1687 14 8 3.7672 -5.7569 -2.5147 15 6 4.5586 -6.8358 -2.6930 16 8 5.0435 -7.4007 -1.7301 17 6 4.8240 -7.3094 -3.9974 18 6 5.6203 -8.3941 -4.1767 19 6 5.8866 -8.8682 -5.4834 20 6 6.6741 -9.9534 -5.8101 21 6 6.6557 -10.0530 -7.2092 22 6 5.8773 -9.0492 -7.6715 23 8 5.4123 -8.3423 -6.6322 24 6 2.6576 -4.1444 1.2123 25 6 3.9901 -4.0041 1.5775 26 6 4.4366 -4.5344 2.7720 27 6 3.5562 -5.1949 3.6091 28 6 2.2289 -5.3366 3.2482 29 6 1.7771 -4.8133 2.0525 30 1 -0.4850 0.8402 -0.0004 31 1 0.6246 -2.5570 -0.8896 32 1 0.6240 -2.5566 0.8903 33 1 4.4932 -5.0780 -0.7034 34 1 3.0679 -6.1399 -0.6086 35 1 4.3940 -6.8079 -4.8518 36 1 6.0506 -8.8954 -3.3224 37 1 7.2009 -10.5993 -5.1233 38 1 7.1684 -10.7930 -7.8057 39 1 5.6608 -8.8515 -8.7109 40 1 4.6773 -3.4849 0.9260 41 1 5.4738 -4.4294 3.0544 42 1 3.9071 -5.6050 4.5446 43 1 1.5447 -5.8570 3.9021 44 1 0.7404 -4.9247 1.7710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003253725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -45.480873 kcal Electronic energy + Delta-G solvation = -29699.001868 eV Core-core repulsion = 25356.453860 eV Total energy + Delta-G solvation = -4342.548008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.97495 -40.75124 -39.78761 -38.15751 -36.65860 -34.87723 -34.58267 -33.48568 -32.73754 -30.77455 -30.04153 -29.44798 -28.77749 -26.71923 -24.85327 -23.00083 -22.52873 -22.32881 -22.07269 -21.32302 -19.85714 -19.19242 -18.27340 -17.59307 -17.26543 -16.77577 -16.51601 -16.39548 -16.23519 -15.92567 -15.37909 -15.12998 -14.96147 -14.39887 -14.27523 -14.00139 -13.47687 -13.42558 -13.25411 -13.17370 -12.95798 -12.86199 -12.68720 -12.37709 -12.22809 -12.16498 -11.50199 -11.24148 -11.11284 -11.07080 -10.87758 -10.74076 -10.64115 -10.59866 -10.35375 -10.19551 -9.79083 -9.40003 -8.71421 -8.63553 -8.45717 -8.43348 -7.74560 -6.07851 -4.12315 -0.05885 1.52014 1.62052 1.65490 2.20572 2.50082 2.57318 2.97323 3.11730 3.32171 3.35749 3.39544 3.77637 3.99743 4.34426 4.43013 4.47311 4.54358 4.77239 4.78244 4.95827 5.13803 5.15968 5.18964 5.26409 5.27669 5.30255 5.32309 5.33788 5.54735 5.60840 5.65181 5.79127 5.84342 5.98681 6.00444 6.23146 6.35119 6.57559 6.61064 6.70812 6.74396 6.91065 7.15754 7.28330 7.39190 7.68009 7.87052 8.14507 8.21068 8.73588 8.91526 9.51969 11.00572 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.002309 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.187088 B =12121.310987 C =14020.176502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.250 3.750 10 N -0.556 5.556 11 C 0.515 3.485 12 O -0.502 6.502 13 C 0.050 3.950 14 O -0.322 6.322 15 C 0.500 3.500 16 O -0.514 6.514 17 C -0.185 4.185 18 C 0.022 3.978 19 C -0.016 4.016 20 C -0.156 4.156 21 C -0.222 4.222 22 C -0.011 4.011 23 O -0.161 6.161 24 C 0.155 3.845 25 C -0.126 4.126 26 C -0.108 4.108 27 C -0.132 4.132 28 C -0.109 4.109 29 C -0.123 4.123 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.208 0.792 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.113 -21.212 -5.585 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.133 3.867 10 N -0.286 5.286 11 C 0.300 3.700 12 O -0.376 6.376 13 C -0.028 4.028 14 O -0.236 6.236 15 C 0.348 3.652 16 O -0.406 6.406 17 C -0.204 4.204 18 C 0.004 3.996 19 C -0.065 4.065 20 C -0.175 4.175 21 C -0.241 4.241 22 C -0.081 4.081 23 O -0.056 6.056 24 C 0.063 3.937 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.142 4.142 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.164 0.836 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.172 0.828 39 H 0.225 0.775 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.645 -20.638 -5.918 24.424 hybrid contribution 0.579 0.916 0.160 1.095 sum 12.223 -19.722 -5.758 23.906 Atomic orbital electron populations 1.69917 1.05971 1.27264 1.50136 1.24907 0.94915 0.99222 0.94910 0.86526 0.79532 0.82521 0.78696 1.20087 1.21108 1.20185 1.21306 0.93375 0.90357 1.51499 0.92368 1.19487 0.86874 0.81383 0.98926 1.45889 1.45921 1.34816 1.01931 1.19761 0.81538 0.84284 0.84396 1.90737 1.55912 1.60516 1.30402 1.22516 1.01309 0.97300 0.81642 1.86266 1.62625 1.44125 1.30623 1.19791 0.76393 0.78430 0.90560 1.90904 1.49456 1.57073 1.43213 1.21357 1.03532 0.99602 0.95895 1.20704 0.93047 0.93547 0.92338 1.19771 1.03022 0.97924 0.85756 1.22418 1.00813 0.98012 0.96225 1.21819 1.05037 1.02302 0.94967 1.24431 0.98243 0.93143 0.92259 1.84155 1.57988 1.49190 1.14299 1.17790 0.92619 0.95064 0.88264 1.21376 0.95607 1.00098 0.97522 1.20977 0.99610 0.98025 0.94003 1.21083 0.93716 1.00554 0.99663 1.20982 0.95807 0.99837 0.96099 1.21310 1.00083 0.97805 0.95041 0.92561 0.93343 0.94298 0.88556 0.88832 0.83608 0.81908 0.82399 0.82755 0.77502 0.85883 0.85999 0.86264 0.85961 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.25 6.56 5.07 -5.20 -0.03 6.53 16 10 N -0.56 -12.13 2.51 -114.74 -0.29 -12.42 16 11 C 0.51 11.18 7.61 -10.99 -0.08 11.10 16 12 O -0.50 -12.97 16.13 -14.30 -0.23 -13.20 16 13 C 0.05 0.87 4.52 36.00 0.16 1.04 16 14 O -0.32 -5.60 9.64 -48.04 -0.46 -6.06 16 15 C 0.50 7.38 7.68 31.89 0.24 7.62 16 16 O -0.51 -8.11 15.88 -19.43 -0.31 -8.42 16 17 C -0.18 -2.17 9.55 -39.32 -0.38 -2.54 16 18 C 0.02 0.21 9.39 -39.22 -0.37 -0.16 16 19 C -0.02 -0.14 6.84 -38.41 -0.26 -0.40 16 20 C -0.16 -1.12 10.90 -38.90 -0.42 -1.54 16 21 C -0.22 -1.37 10.87 -39.90 -0.43 -1.80 16 22 C -0.01 -0.07 12.06 29.64 0.36 0.29 16 23 O -0.16 -1.51 10.18 4.68 0.05 -1.46 16 24 C 0.15 2.84 4.43 -83.69 -0.37 2.47 16 25 C -0.13 -2.07 8.44 -39.39 -0.33 -2.41 16 26 C -0.11 -1.45 10.04 -39.61 -0.40 -1.85 16 27 C -0.13 -1.65 10.04 -39.55 -0.40 -2.05 16 28 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 29 C -0.12 -1.97 9.64 -39.39 -0.38 -2.35 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 32 H 0.04 1.03 7.83 -51.93 -0.41 0.62 16 33 H 0.10 1.55 6.96 -51.93 -0.36 1.19 16 34 H 0.09 1.48 8.01 -51.93 -0.42 1.06 16 35 H 0.15 1.64 7.72 -52.49 -0.41 1.24 16 36 H 0.16 1.34 7.46 -52.49 -0.39 0.95 16 37 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.12 2.01 7.90 -52.49 -0.41 1.60 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -35.49 396.36 -8.75 -44.24 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.29 Total: 1.63 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.90 Total: -1.54 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.45 Total: -38.18 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.95 Total: -29.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.49 -8.75 -44.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003253725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.246 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds