Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 119.99653 * 2 1 4 4 C 1.50697 * 109.46898 * 269.99857 * 3 2 1 5 5 H 1.08004 * 120.00303 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99813 * 179.97438 * 4 3 2 7 7 N 1.31503 * 119.99909 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99617 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47026 * 60.00271 * 8 6 4 10 10 H 1.48500 * 109.46662 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47298 * 299.99908 * 8 6 4 12 12 C 1.34773 * 120.00325 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00124 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99714 * 359.97438 * 12 2 1 15 15 O 1.45203 * 109.46857 * 180.02562 * 14 12 2 16 16 C 1.34724 * 116.99861 * 180.02562 * 15 14 12 17 17 O 1.21478 * 119.99999 * 0.02562 * 16 15 14 18 18 C 1.47659 * 119.99778 * 179.97438 * 16 15 14 19 19 C 1.39676 * 120.15923 * 0.02562 * 18 16 15 20 20 C 1.37895 * 119.85898 * 179.97438 * 19 18 16 21 21 C 1.38424 * 120.17803 * 0.02562 * 20 19 18 22 22 C 1.38295 * 120.32351 * 359.97438 * 21 20 19 23 23 C 1.38106 * 120.13633 * 0.02562 * 22 21 20 24 24 Br 1.89102 * 120.08822 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46822 * 269.99703 * 1 2 3 26 26 H 1.08991 * 109.47235 * 30.00340 * 1 2 3 27 27 H 1.09006 * 109.46714 * 150.00482 * 1 2 3 28 28 H 1.09007 * 109.47360 * 29.99655 * 3 2 1 29 29 H 1.08997 * 109.47425 * 150.00079 * 3 2 1 30 30 H 0.97003 * 119.99762 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47164 * 60.00135 * 14 12 2 32 32 H 1.09002 * 109.47439 * 299.99447 * 14 12 2 33 33 H 1.08000 * 120.07329 * 359.95484 * 19 18 16 34 34 H 1.07994 * 119.91149 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.84240 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.93212 * 179.72566 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1259 2.8781 -1.6728 7 7 3.5523 3.6187 -0.6732 8 14 3.4378 3.4168 -3.4340 9 1 2.1405 3.5935 -4.1347 10 1 4.1791 4.7036 -3.4340 11 1 4.2413 2.3821 -4.1333 12 6 2.1390 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4722 0.0017 15 8 2.3292 -3.5758 0.0027 16 6 1.8143 -4.8208 0.0033 17 8 0.6100 -4.9800 0.0025 18 6 2.7138 -5.9917 0.0037 19 6 4.0990 -5.8125 0.0041 20 6 4.9334 -6.9104 0.0050 21 6 4.4016 -8.1884 0.0051 22 6 3.0313 -8.3745 0.0047 23 6 2.1835 -7.2843 0.0038 24 35 0.3099 -7.5404 0.0025 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6084 2.0285 0.5138 29 1 3.1499 1.1386 0.5138 30 1 4.0284 4.4450 -0.8505 31 1 0.7586 -2.5306 -0.8880 32 1 0.7593 -2.5295 0.8920 33 1 4.5158 -4.8161 0.0033 34 1 6.0045 -6.7728 0.0057 35 1 5.0601 -9.0444 0.0062 36 1 2.6232 -9.3745 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003282213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = -68.579682 kcal Electronic energy + Delta-G solvation = -22426.229263 eV Core-core repulsion = 18729.985986 eV Total energy + Delta-G solvation = -3696.243277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74948 -39.31831 -38.61109 -36.34494 -34.86212 -32.68496 -32.64884 -31.95048 -29.64505 -29.20879 -27.29978 -25.73714 -24.47743 -22.96691 -22.51376 -21.06517 -18.88797 -18.28185 -17.11389 -16.76588 -16.39561 -16.37660 -15.88761 -15.50915 -15.16422 -14.76456 -14.71609 -14.18928 -13.89975 -13.68268 -13.09706 -12.95156 -12.42843 -12.25211 -12.12317 -12.09942 -11.88806 -11.62371 -11.40196 -11.23028 -11.14877 -10.95299 -10.64913 -10.60097 -10.19050 -9.69050 -9.50798 -9.40553 -9.11224 -9.02402 -8.46275 -7.75631 -6.07474 -4.12635 0.23608 0.76504 1.32456 2.33681 2.36259 3.22537 3.30810 3.31233 3.35260 3.39284 3.84172 4.29647 4.41826 4.50571 4.55895 4.81530 4.90922 4.94033 5.05369 5.19853 5.23781 5.27371 5.46039 5.59792 5.67986 5.76248 5.86493 5.94550 6.15632 6.26875 6.30828 6.95833 7.36582 7.43653 7.64350 7.88272 8.18123 8.26232 8.81858 8.96573 9.52435 11.00682 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002480 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.255502 B =11287.687940 C =12112.678775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.597 5.597 3 C 0.247 3.753 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.520 6.520 14 C 0.053 3.947 15 O -0.325 6.325 16 C 0.495 3.505 17 O -0.480 6.480 18 C -0.099 4.099 19 C -0.051 4.051 20 C -0.119 4.119 21 C -0.082 4.082 22 C -0.107 4.107 23 C -0.041 4.041 24 Br -0.011 7.011 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -26.370 3.149 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.396 6.396 14 C -0.024 4.024 15 O -0.240 6.240 16 C 0.339 3.661 17 O -0.368 6.368 18 C -0.102 4.102 19 C -0.070 4.070 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.122 4.122 24 Br 0.076 6.924 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.620 -26.267 3.199 26.862 hybrid contribution 0.336 0.532 -1.005 1.186 sum -4.284 -25.735 2.194 26.181 Atomic orbital electron populations 1.21742 0.81060 1.02972 1.00850 1.48099 1.06379 1.07213 1.71413 1.19351 0.92627 0.77476 0.97701 1.21392 1.36886 1.06428 0.92201 0.92420 1.24932 0.95244 0.96312 0.97533 1.69916 1.38229 1.14315 1.30849 0.86539 0.78406 0.77837 0.84536 1.20214 1.21134 1.20117 1.19701 0.88159 0.84255 0.78845 1.90706 1.13355 1.86740 1.48782 1.22938 0.91047 0.84053 1.04366 1.86576 1.39957 1.13911 1.83536 1.21041 0.87369 0.83624 0.74110 1.91007 1.15294 1.86096 1.44444 1.18897 0.93642 0.89980 1.07702 1.21726 0.91147 1.01176 0.92969 1.21371 1.00907 0.92031 0.99415 1.21474 0.94574 0.97938 0.96072 1.21095 0.93138 0.97861 1.00606 1.22032 0.92847 0.94135 1.03137 1.96810 1.02435 1.96376 1.96818 0.93267 0.90220 0.92425 0.94590 0.93627 0.92578 0.88469 0.88604 0.82866 0.84244 0.84430 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.24 59.85 0.61 1.81 16 2 N -0.60 -12.55 2.86 -182.95 -0.52 -13.07 16 3 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.51 10.62 7.75 -10.99 -0.09 10.54 16 13 O -0.52 -13.20 16.08 -14.10 -0.23 -13.43 16 14 C 0.05 0.86 4.51 36.00 0.16 1.02 16 15 O -0.32 -5.39 9.01 -47.24 -0.43 -5.82 16 16 C 0.50 7.38 7.89 34.58 0.27 7.65 16 17 O -0.48 -7.51 13.27 -19.25 -0.26 -7.77 16 18 C -0.10 -1.24 5.88 -104.96 -0.62 -1.86 16 19 C -0.05 -0.55 9.62 -39.17 -0.38 -0.93 16 20 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 21 C -0.08 -0.55 10.04 -39.49 -0.40 -0.94 16 22 C -0.11 -0.87 9.78 -39.61 -0.39 -1.25 16 23 C -0.04 -0.45 6.26 -39.08 -0.24 -0.70 16 24 Br -0.01 -0.13 30.40 -68.01 -2.07 -2.20 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.10 1.41 7.39 -51.93 -0.38 1.03 16 32 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -34.28 339.30 -8.57 -42.85 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -4.00 Total: -3.55 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.90 Total: 6.79 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.21 Total: -38.71 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.91 Total: -27.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -2.07 Total: -2.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.28 -8.57 -42.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003282213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.730 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds