Wall clock time and date at job start Tue Mar 31 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99656 * 2 1 4 4 H 1.48500 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47283 * 299.99822 * 3 2 1 6 6 H 1.48495 * 109.47319 * 59.99941 * 3 2 1 7 7 C 1.37881 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99858 * 269.99930 * 10 9 7 12 12 O 1.21285 * 120.00266 * 4.43081 * 11 10 9 13 13 C 1.50707 * 119.99689 * 184.43211 * 11 10 9 14 14 O 1.45200 * 109.46740 * 174.72993 * 13 11 10 15 15 C 1.34748 * 116.99807 * 180.02562 * 14 13 11 16 16 O 1.21514 * 119.99875 * 359.97438 * 15 14 13 17 17 C 1.47460 * 120.00115 * 180.02562 * 15 14 13 18 18 C 1.39795 * 120.09121 * 359.72427 * 17 15 14 19 19 C 1.37684 * 119.90328 * 179.76370 * 18 17 15 20 20 C 1.39011 * 120.09154 * 0.49046 * 19 18 17 21 21 O 1.35705 * 119.90388 * 179.74534 * 20 19 18 22 22 C 1.39011 * 120.19158 * 359.76134 * 20 19 18 23 23 C 1.37678 * 120.09187 * 0.02562 * 22 20 19 24 24 C 1.39930 * 119.99689 * 90.00078 * 10 9 7 25 25 C 1.38872 * 120.06914 * 246.70733 * 24 10 9 26 26 C 1.38109 * 119.92865 * 179.97438 * 25 24 10 27 27 C 1.38289 * 120.07137 * 359.97438 * 26 25 24 28 28 C 1.38281 * 120.13806 * 0.04960 * 27 26 25 29 29 C 1.38114 * 120.07160 * 359.94992 * 28 27 26 30 30 H 0.96991 * 120.00637 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46888 * 60.00160 * 9 7 2 32 32 H 1.09001 * 109.46851 * 299.99645 * 9 7 2 33 33 H 1.08998 * 109.47306 * 294.73002 * 13 11 10 34 34 H 1.08998 * 109.46760 * 54.73284 * 13 11 10 35 35 H 1.07999 * 120.05046 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.95153 * 180.20989 * 19 18 17 37 37 H 0.96704 * 113.99435 * 270.01895 * 21 20 19 38 38 H 1.07996 * 119.95572 * 179.97438 * 22 20 19 39 39 H 1.08001 * 120.05148 * 179.97438 * 23 22 20 40 40 H 1.08000 * 120.03395 * 359.70933 * 25 24 10 41 41 H 1.07998 * 119.96629 * 179.97438 * 26 25 24 42 42 H 1.07995 * 119.92735 * 180.02562 * 27 26 25 43 43 H 1.07997 * 119.95925 * 179.97438 * 28 27 26 44 44 H 1.08001 * 120.03326 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6411 -4.1248 -1.1677 12 8 2.3105 -3.6132 -2.2165 13 6 3.5417 -5.3332 -1.1696 14 8 3.7713 -5.7634 -2.5373 15 6 4.5615 -6.8403 -2.7153 16 8 5.0458 -7.4041 -1.7539 17 6 4.8394 -7.3339 -4.0767 18 6 4.2795 -6.6896 -5.1838 19 6 4.5455 -7.1508 -6.4535 20 6 5.3613 -8.2617 -6.6349 21 8 5.6168 -8.7161 -7.8878 22 6 5.9159 -8.9085 -5.5365 23 6 5.6586 -8.4512 -4.2636 24 6 2.6579 -4.1443 1.2113 25 6 3.9904 -4.0041 1.5764 26 6 4.4359 -4.5296 2.7734 27 6 3.5565 -5.1943 3.6083 28 6 2.2291 -5.3360 3.2475 29 6 1.7774 -4.8128 2.0518 30 1 -0.4850 0.8399 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 4.4937 -5.0776 -0.7045 34 1 3.0686 -6.1397 -0.6096 35 1 3.6419 -5.8292 -5.0435 36 1 4.1161 -6.6516 -7.3095 37 1 4.9833 -9.3748 -8.2040 38 1 6.5488 -9.7714 -5.6818 39 1 6.0894 -8.9545 -3.4107 40 1 4.6785 -3.4885 0.9229 41 1 5.4721 -4.4213 3.0577 42 1 3.9073 -5.6040 4.5440 43 1 1.5450 -5.8560 3.9016 44 1 0.7405 -4.9235 1.7707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003288406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:12 Heat of formation + Delta-G solvation = -95.759409 kcal Electronic energy + Delta-G solvation = -30155.855551 eV Core-core repulsion = 25811.127302 eV Total energy + Delta-G solvation = -4344.728249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83060 -40.03857 -39.51883 -38.16030 -37.03791 -36.28744 -34.91544 -32.77096 -31.49736 -30.88304 -30.70122 -29.52989 -28.93987 -26.68667 -24.28976 -23.17277 -22.94398 -22.53105 -22.10201 -21.09525 -19.27120 -18.86827 -18.29031 -17.49730 -16.81549 -16.59882 -16.44491 -16.03339 -15.82181 -15.75348 -15.32560 -15.00884 -14.81803 -14.31908 -14.30019 -14.06728 -13.87516 -13.39667 -13.20517 -13.06912 -12.87672 -12.63512 -12.45337 -12.35424 -12.26981 -12.16750 -11.53475 -11.26991 -11.11925 -10.89275 -10.87412 -10.73046 -10.70901 -10.68061 -10.22035 -9.78954 -9.45138 -9.44722 -9.12210 -8.74436 -8.67381 -8.49162 -7.78326 -6.10908 -4.15324 0.29034 0.96655 1.48683 1.59083 2.27070 2.33363 3.05571 3.27654 3.33912 3.35118 3.39445 3.67508 3.75333 3.96391 4.40284 4.45814 4.55253 4.60829 4.72705 4.92299 5.07523 5.10357 5.13417 5.18575 5.24513 5.24971 5.30749 5.34320 5.62185 5.62488 5.75978 5.76426 5.93128 5.95465 6.00871 6.20250 6.27503 6.29918 6.54564 6.68098 6.70841 6.87480 7.12556 7.17012 7.24375 7.35494 7.61187 7.84318 8.11209 8.16522 8.68591 8.88756 9.49312 10.97634 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.009894 B = 0.002691 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.426524 B =10403.389106 C =12484.043443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.555 5.555 11 C 0.515 3.485 12 O -0.502 6.502 13 C 0.052 3.948 14 O -0.325 6.325 15 C 0.509 3.491 16 O -0.507 6.507 17 C -0.133 4.133 18 C -0.039 4.039 19 C -0.159 4.159 20 C 0.140 3.860 21 O -0.498 6.498 22 C -0.161 4.161 23 C -0.037 4.037 24 C 0.153 3.847 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.108 4.108 29 C -0.122 4.122 30 H 0.264 0.736 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.396 0.604 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.807 -19.534 -4.578 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.133 3.867 10 N -0.285 5.285 11 C 0.300 3.700 12 O -0.376 6.376 13 C -0.025 4.025 14 O -0.240 6.240 15 C 0.353 3.647 16 O -0.396 6.396 17 C -0.135 4.135 18 C -0.057 4.057 19 C -0.178 4.178 20 C 0.096 3.904 21 O -0.310 6.310 22 C -0.180 4.180 23 C -0.055 4.055 24 C 0.061 3.939 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.142 4.142 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.254 0.746 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.022 -18.848 -4.876 21.457 hybrid contribution 0.087 0.759 0.256 0.806 sum 9.109 -18.089 -4.620 20.773 Atomic orbital electron populations 1.69926 1.05982 1.27094 1.50279 1.24908 0.94903 0.99250 0.94895 0.86410 0.80033 0.83194 0.77634 1.19737 1.20785 1.20903 1.21379 0.93452 0.90316 1.51305 0.92250 1.19505 0.86856 0.81393 0.98950 1.45887 1.45868 1.34796 1.01903 1.19720 0.81535 0.84244 0.84452 1.90733 1.55971 1.60546 1.30366 1.22935 1.01494 0.97378 0.80727 1.86579 1.62520 1.43939 1.30985 1.21108 0.75758 0.78022 0.89764 1.90845 1.49320 1.57135 1.42345 1.19148 1.04396 0.99599 0.90320 1.21564 0.95389 0.97966 0.90811 1.21477 0.99946 0.98269 0.98061 1.18824 0.93994 0.93389 0.84224 1.84751 1.55555 1.62375 1.28278 1.21352 1.03143 1.02014 0.91454 1.21150 0.93675 0.93095 0.97614 1.17792 0.92628 0.95162 0.88299 1.21377 0.95598 1.00135 0.97510 1.20984 0.99654 0.97965 0.93984 1.21092 0.93720 1.00460 0.99695 1.20986 0.95803 0.99827 0.96095 1.21308 1.00078 0.97800 0.95033 0.92646 0.93304 0.94286 0.88227 0.88494 0.83186 0.84283 0.74632 0.84390 0.83920 0.85873 0.85968 0.86236 0.85937 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.25 6.42 5.07 -5.19 -0.03 6.39 16 10 N -0.55 -11.79 2.51 -114.73 -0.29 -12.08 16 11 C 0.51 10.79 7.62 -10.98 -0.08 10.70 16 12 O -0.50 -12.45 16.14 -14.05 -0.23 -12.68 16 13 C 0.05 0.87 4.62 36.01 0.17 1.03 16 14 O -0.33 -5.39 9.00 -47.29 -0.43 -5.82 16 15 C 0.51 7.48 7.89 34.49 0.27 7.76 16 16 O -0.51 -8.11 16.13 -19.28 -0.31 -8.42 16 17 C -0.13 -1.60 5.87 -104.98 -0.62 -2.22 16 18 C -0.04 -0.43 9.61 -39.20 -0.38 -0.81 16 19 C -0.16 -1.45 9.97 -39.50 -0.39 -1.85 16 20 C 0.14 1.19 6.71 -39.01 -0.26 0.93 16 21 O -0.50 -3.50 13.49 -18.82 -0.25 -3.75 16 22 C -0.16 -1.33 9.97 -39.50 -0.39 -1.72 16 23 C -0.04 -0.37 9.59 -39.20 -0.38 -0.74 16 24 C 0.15 2.74 4.43 -83.69 -0.37 2.37 16 25 C -0.13 -2.03 8.45 -39.39 -0.33 -2.36 16 26 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 27 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 28 C -0.11 -1.41 10.04 -39.61 -0.40 -1.80 16 29 C -0.12 -1.92 9.64 -39.39 -0.38 -2.30 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.05 1.38 7.49 -51.93 -0.39 1.00 16 32 H 0.04 1.02 7.82 -51.93 -0.41 0.61 16 33 H 0.10 1.55 6.96 -51.93 -0.36 1.19 16 34 H 0.10 1.47 8.02 -51.93 -0.42 1.05 16 35 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.40 0.78 9.06 45.56 0.41 1.19 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.30 7.64 -52.49 -0.40 0.90 16 40 H 0.12 1.97 7.89 -52.49 -0.41 1.56 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -35.11 392.76 -9.11 -44.22 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.46 Total: 3.10 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -4.79 Total: -1.85 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.45 Total: -37.53 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.22 Total: -30.67 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.11 -9.11 -44.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003288406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.537 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds