Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37954 * 120.07363 * 2 1 4 4 C 1.38353 * 120.14791 * 180.27944 * 3 2 1 5 5 C 1.38401 * 120.31257 * 359.72029 * 4 3 2 6 6 S 1.76205 * 119.92004 * 180.02562 * 5 4 3 7 7 O 1.42098 * 106.40537 * 23.52409 * 6 5 4 8 8 O 1.42100 * 106.39622 * 156.43913 * 6 5 4 9 9 N 1.65595 * 107.21745 * 269.97740 * 6 5 4 10 10 C 1.47151 * 120.98496 * 269.71726 * 9 6 5 11 11 C 1.53711 * 108.15933 * 129.43535 * 10 9 6 12 12 O 1.42959 * 109.15098 * 52.54344 * 11 10 9 13 13 C 1.42972 * 114.16192 * 297.28982 * 12 11 10 14 14 C 1.47157 * 120.98154 * 90.00824 * 9 6 5 15 15 C 1.37900 * 120.15449 * 0.02562 * 5 4 3 16 16 C 1.39642 * 120.08047 * 179.72594 * 2 1 3 17 17 C 1.47665 * 120.15210 * 359.97438 * 16 2 1 18 18 O 1.21505 * 120.00369 * 353.53976 * 17 16 2 19 19 O 1.34740 * 119.99992 * 173.25593 * 17 16 2 20 20 C 1.34852 * 116.99665 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00326 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99213 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00495 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99524 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47049 * 60.00530 * 24 22 20 26 26 H 1.48498 * 109.46971 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47295 * 300.00392 * 24 22 20 28 28 H 1.09007 * 109.46973 * 263.65373 * 1 2 3 29 29 H 1.08995 * 109.47576 * 23.66340 * 1 2 3 30 30 H 1.09000 * 109.47037 * 143.66403 * 1 2 3 31 31 H 1.08002 * 119.92801 * 359.97438 * 3 2 1 32 32 H 1.08009 * 119.84299 * 179.73957 * 4 3 2 33 33 H 1.08997 * 109.68387 * 249.21688 * 10 9 6 34 34 H 1.08999 * 109.68022 * 9.76921 * 10 9 6 35 35 H 1.08998 * 109.65715 * 292.57339 * 11 10 9 36 36 H 1.09003 * 109.48419 * 172.40373 * 11 10 9 37 37 H 1.08997 * 109.50786 * 302.65085 * 13 12 11 38 38 H 1.08994 * 109.54880 * 182.52830 * 13 12 11 39 39 H 1.08996 * 109.67888 * 350.22792 * 14 9 6 40 40 H 1.08997 * 109.68295 * 110.74753 * 14 9 6 41 41 H 1.07997 * 120.08200 * 180.02562 * 15 5 4 42 42 H 0.96996 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2820 0.0017 -0.0059 6 16 6.0440 0.0161 -0.0127 7 8 6.4372 1.2704 0.5271 8 8 6.4573 -1.2289 0.5334 9 7 6.5280 0.0160 -1.5963 10 6 6.7658 -1.2455 -2.3157 11 6 5.9908 -1.1939 -3.6421 12 8 6.3321 0.0072 -4.3382 13 6 5.9709 1.2062 -3.6483 14 6 6.7394 1.2775 -2.3239 15 6 3.6038 -1.1990 -0.0006 16 6 2.2070 -1.2083 0.0058 17 6 1.4738 -2.4901 0.0125 18 8 0.2646 -2.4979 0.1314 19 8 2.1452 -3.6509 -0.1190 20 6 1.4157 -4.7850 -0.1053 21 1 0.3427 -4.7355 0.0071 22 6 2.0439 -6.0159 -0.2366 23 7 3.3494 -6.0760 -0.3739 24 14 1.0334 -7.5869 -0.2169 25 1 0.0568 -7.5614 -1.3354 26 1 1.9345 -8.7570 -0.3726 27 1 0.3057 -7.6913 1.0733 28 1 -0.3633 -0.1136 1.0214 29 1 -0.3634 0.9412 -0.4124 30 1 -0.3633 -0.8278 -0.6089 31 1 1.6584 2.1292 -0.0004 32 1 4.1181 2.1332 -0.0101 33 1 7.8314 -1.3598 -2.5140 34 1 6.4118 -2.0831 -1.7147 35 1 4.9195 -1.2066 -3.4417 36 1 6.2572 -2.0567 -4.2527 37 1 4.8995 1.2022 -3.4479 38 1 6.2231 2.0706 -4.2626 39 1 6.3678 2.1114 -1.7284 40 1 7.8025 1.4131 -2.5225 41 1 4.1513 -2.1299 -0.0002 42 1 3.7883 -6.9361 -0.4653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003340673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = -158.378676 kcal Electronic energy + Delta-G solvation = -30437.625296 eV Core-core repulsion = 26089.792529 eV Total energy + Delta-G solvation = -4347.832767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.101 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.89034 -39.33828 -38.31662 -37.31133 -35.87247 -35.42469 -34.97275 -32.72442 -32.29773 -31.56963 -31.18935 -27.40883 -27.22290 -25.60803 -24.40953 -23.61016 -22.05984 -21.58341 -20.68044 -19.02366 -18.15718 -17.87929 -17.56069 -16.64715 -16.41675 -15.93357 -15.54108 -15.37266 -15.24891 -15.17736 -14.85874 -14.72336 -14.53677 -14.29041 -14.19482 -13.79661 -13.37099 -12.81544 -12.71386 -12.33282 -12.23690 -12.13181 -12.12018 -12.04187 -12.02673 -11.80383 -11.68160 -11.58602 -11.51173 -11.28038 -10.90997 -10.66691 -10.55355 -10.52415 -10.38785 -9.96816 -9.15075 -8.98767 -8.93662 -8.93168 -8.68947 -6.55951 -4.19084 0.28051 0.77793 1.15293 2.72589 3.03309 3.11581 3.15747 3.22114 3.65721 3.69068 3.79188 4.01946 4.16216 4.37549 4.51090 4.59622 4.75269 4.89007 4.92874 4.98846 5.03564 5.04499 5.07281 5.17612 5.34183 5.37472 5.46828 5.56686 5.60465 5.73161 5.77758 5.80436 5.89195 5.98397 6.03016 6.18304 6.24512 6.28962 6.54301 6.77148 6.92003 6.93147 7.26687 7.80290 8.55764 8.91516 9.67873 10.60785 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.003935 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.326922 B = 7113.505434 C = 8299.352724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.020 3.980 3 C -0.155 4.155 4 C -0.010 4.010 5 C -0.698 4.698 6 S 2.693 3.307 7 O -0.959 6.959 8 O -0.943 6.943 9 N -1.002 6.002 10 C 0.085 3.915 11 C 0.046 3.954 12 O -0.378 6.378 13 C 0.046 3.954 14 C 0.088 3.912 15 C 0.029 3.971 16 C -0.109 4.109 17 C 0.427 3.573 18 O -0.546 6.546 19 O -0.201 6.201 20 C -0.376 4.376 21 H 0.099 0.901 22 C 0.043 3.957 23 N -0.852 5.852 24 Si 0.947 3.053 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.268 1.268 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.156 0.844 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 14.994 -5.811 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.019 3.981 3 C -0.173 4.173 4 C -0.029 4.029 5 C -0.786 4.786 6 S 2.785 3.215 7 O -0.949 6.949 8 O -0.934 6.934 9 N -0.840 5.840 10 C -0.040 4.040 11 C -0.032 4.032 12 O -0.296 6.296 13 C -0.032 4.032 14 C -0.038 4.038 15 C 0.009 3.991 16 C -0.111 4.111 17 C 0.276 3.724 18 O -0.446 6.446 19 O -0.108 6.108 20 C -0.452 4.452 21 H 0.116 0.884 22 C -0.163 4.163 23 N -0.488 5.488 24 Si 0.771 3.229 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.193 1.193 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.174 0.826 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.119 14.786 -5.260 16.845 hybrid contribution -1.280 -0.748 0.086 1.485 sum 4.839 14.039 -5.175 15.725 Atomic orbital electron populations 1.21217 0.89558 1.03227 1.04283 1.20374 0.97296 0.91424 0.88973 1.21047 0.93933 0.97575 1.04780 1.20918 0.94647 0.96136 0.91233 1.30808 1.26724 0.99435 1.21622 1.01993 0.73779 0.73618 0.72069 1.93551 1.81627 1.43867 1.75857 1.93633 1.80744 1.43800 1.75193 1.57906 1.82674 1.12191 1.31273 1.22288 1.01945 0.85290 0.94467 1.23095 0.99124 0.87928 0.93080 1.87947 1.82911 1.13700 1.45078 1.22961 0.98638 0.88532 0.93109 1.22118 1.02133 0.85326 0.94214 1.21333 0.93968 0.97118 0.86648 1.19395 0.93150 0.92115 1.06474 1.20535 0.86082 0.84944 0.80870 1.90576 1.14932 1.87414 1.51632 1.83880 1.39982 1.13137 1.73789 1.21276 0.92493 0.80390 1.51032 0.88356 1.25410 0.96202 0.98708 0.95935 1.69959 1.08150 1.26848 1.43816 0.85694 0.78802 0.78981 0.79454 1.19354 1.20190 1.19338 0.90064 0.92425 0.87740 0.84704 0.84452 0.89819 0.87456 0.92018 0.87285 0.92440 0.87781 0.88417 0.89956 0.82604 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.73 36.01 0.31 -1.62 16 2 C 0.02 0.33 5.92 -104.20 -0.62 -0.29 16 3 C -0.15 -2.03 9.66 -39.64 -0.38 -2.41 16 4 C -0.01 -0.13 9.52 -39.48 -0.38 -0.50 16 5 C -0.70 -10.63 5.97 -39.64 -0.24 -10.86 16 6 S 2.69 38.96 5.70 -107.50 -0.61 38.35 16 7 O -0.96 -14.55 16.07 -57.17 -0.92 -15.47 16 8 O -0.94 -16.90 16.07 -57.17 -0.92 -17.82 16 9 N -1.00 -11.71 3.34 -112.83 -0.38 -12.09 16 10 C 0.09 0.97 6.60 -3.32 -0.02 0.95 16 11 C 0.05 0.50 7.00 37.53 0.26 0.76 16 12 O -0.38 -4.21 10.74 -35.23 -0.38 -4.59 16 13 C 0.05 0.40 6.98 37.31 0.26 0.66 16 14 C 0.09 0.79 6.57 -3.53 -0.02 0.77 16 15 C 0.03 0.53 9.09 -39.16 -0.36 0.18 16 16 C -0.11 -2.17 5.87 -104.98 -0.62 -2.79 16 17 C 0.43 10.45 7.76 34.58 0.27 10.72 16 18 O -0.55 -13.83 12.60 -19.27 -0.24 -14.07 16 19 O -0.20 -5.59 9.01 -21.66 -0.20 -5.78 16 20 C -0.38 -10.70 9.65 30.95 0.30 -10.40 16 21 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 22 C 0.04 1.17 5.50 -17.52 -0.10 1.07 16 23 N -0.85 -23.91 13.67 55.49 0.76 -23.15 16 24 Si 0.95 20.50 29.55 -169.99 -5.02 15.47 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 30 H 0.10 1.88 5.87 -51.93 -0.30 1.57 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.38 7.61 -52.48 -0.40 0.98 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 1.34 7.24 -51.93 -0.38 0.96 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.76 7.25 -51.93 -0.38 0.38 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.16 3.10 7.18 -52.49 -0.38 2.72 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -34.93 366.28 -8.84 -43.76 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.13 Total: 3.63 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.32 Total: -13.76 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.38 Total: -35.24 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -2.65 Total: -57.74 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 38.96 SS G_CDS: -0.61 Total: 38.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.93 -8.84 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003340673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.616 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds