Wall clock time and date at job start Tue Mar 31 2020 05:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39757 * 120.09305 * 108.32275 * 3 2 1 5 5 C 1.37729 * 119.90524 * 180.02562 * 4 3 2 6 6 C 1.38968 * 120.09236 * 359.97438 * 5 4 3 7 7 O 1.35763 * 119.90148 * 180.02562 * 6 5 4 8 8 C 1.42897 * 116.99594 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46995 * 180.02562 * 8 7 6 10 10 O 1.21291 * 119.99949 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00099 * 180.02562 * 9 8 7 12 12 C 1.39938 * 120.00173 * 185.73862 * 11 9 8 13 13 C 1.38684 * 120.11224 * 24.75033 * 12 11 9 14 14 C 1.38220 * 120.01894 * 180.02562 * 13 12 11 15 15 C 1.38394 * 120.24875 * 359.96079 * 14 13 12 16 16 C 1.38081 * 120.23064 * 0.02562 * 15 14 13 17 17 C 1.38994 * 119.97779 * 0.03492 * 16 15 14 18 18 S 1.76195 * 120.12502 * 179.97438 * 17 16 15 19 19 C 1.76203 * 100.00020 * 5.61963 * 18 17 16 20 20 H 1.07993 * 119.99677 * 354.96047 * 19 18 17 21 21 C 1.38687 * 119.99706 * 174.96929 * 19 18 17 22 22 N 1.31646 * 120.00649 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99638 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47271 * 89.99797 * 23 21 19 25 25 H 1.48500 * 109.46800 * 209.99983 * 23 21 19 26 26 H 1.48500 * 109.47083 * 329.99454 * 23 21 19 27 27 C 1.38956 * 120.19090 * 0.27885 * 6 5 4 28 28 C 1.37742 * 120.09394 * 359.44318 * 27 6 5 29 29 H 1.08000 * 120.04588 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.95201 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47354 * 60.00132 * 8 7 6 32 32 H 1.08997 * 109.47424 * 300.00045 * 8 7 6 33 33 H 0.97001 * 119.99900 * 5.72904 * 11 9 8 34 34 H 1.07998 * 119.98998 * 0.02562 * 13 12 11 35 35 H 1.08000 * 119.87651 * 179.97438 * 14 13 12 36 36 H 1.08000 * 119.88668 * 179.74737 * 15 14 13 37 37 H 1.08001 * 120.01017 * 179.97438 * 16 15 14 38 38 H 0.96997 * 120.00445 * 180.02562 * 22 21 19 39 39 H 1.08004 * 119.95422 * 179.70116 * 27 6 5 40 40 H 1.08004 * 120.04612 * 180.25096 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.3811 -1.1479 5 6 4.6458 0.3798 -1.1438 6 6 5.3388 0.0014 -0.0002 7 8 6.6965 0.0020 -0.0003 8 6 7.3454 -0.3985 1.2082 9 6 8.8393 -0.3351 1.0210 10 8 9.3028 0.0179 -0.0428 11 7 9.6605 -0.6716 2.0354 12 6 11.0429 -0.4988 1.9033 13 6 11.5449 0.4433 1.0180 14 6 12.9107 0.6119 0.8887 15 6 13.7823 -0.1562 1.6408 16 6 13.2937 -1.0970 2.5255 17 6 11.9220 -1.2754 2.6622 18 16 11.2943 -2.4753 3.7894 19 6 12.7956 -2.9927 4.5529 20 1 13.7416 -2.6136 4.1957 21 6 12.7624 -3.8870 5.6125 22 7 11.6092 -4.3488 6.0482 23 14 14.3541 -4.4361 6.4215 24 1 14.6876 -3.5124 7.5354 25 1 14.1900 -5.8131 6.9525 26 1 15.4500 -4.4193 5.4195 27 6 4.6462 -0.3826 1.1416 28 6 3.2689 -0.3787 1.1480 29 1 2.7307 0.6749 -2.0371 30 1 5.1880 0.6732 -2.0305 31 1 7.0530 -1.4187 1.4568 32 1 7.0522 0.2707 2.0171 33 1 9.2933 -1.0333 2.8571 34 1 10.8685 1.0454 0.4296 35 1 13.2991 1.3460 0.1983 36 1 14.8484 -0.0224 1.5321 37 1 13.9771 -1.6948 3.1103 38 1 11.5859 -4.9740 6.7895 39 1 5.1887 -0.6806 2.0267 40 1 2.7313 -0.6735 2.0372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003363139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:39 Heat of formation + Delta-G solvation = 18.173093 kcal Electronic energy + Delta-G solvation = -25973.475334 eV Core-core repulsion = 22038.326008 eV Total energy + Delta-G solvation = -3935.149326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91970 -40.05931 -38.41730 -37.60451 -36.40283 -34.57217 -32.83724 -31.81245 -31.10481 -30.42397 -29.91389 -27.84443 -25.96527 -23.84067 -23.52064 -22.54442 -22.01398 -20.26476 -19.33558 -18.73710 -18.45779 -17.39740 -16.74482 -16.63823 -16.27611 -15.97487 -15.19578 -15.09809 -14.85692 -14.62281 -14.29425 -14.23877 -14.09499 -14.00034 -13.73826 -13.35856 -13.05533 -13.01048 -12.81809 -12.78533 -12.49004 -12.38056 -11.77329 -11.52088 -11.40677 -11.32036 -11.28571 -11.13321 -10.47359 -10.27641 -9.96992 -9.66583 -9.60720 -9.51041 -8.88218 -8.75915 -8.70071 -7.78367 -6.62734 -6.60869 -4.32781 0.40858 0.81935 1.70558 1.99045 2.23927 2.34764 2.56269 2.64986 2.97063 3.04875 3.11944 3.23698 3.45184 3.45770 3.57987 3.90291 4.20555 4.33548 4.36145 4.47917 4.61355 4.70667 4.73868 4.82863 4.94314 4.99545 5.06230 5.45854 5.53796 5.55122 5.58976 5.75610 5.79477 5.85151 6.01515 6.08537 6.12241 6.45478 6.69664 6.78088 6.84242 7.00888 7.13772 7.16846 7.37180 7.56035 7.58250 8.05492 8.13197 8.88135 10.46312 Molecular weight = 354.08amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.002051 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.045479 B =13648.384621 C =15609.882145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.261 3.739 3 C -0.077 4.077 4 C -0.029 4.029 5 C -0.150 4.150 6 C 0.166 3.834 7 O -0.281 6.281 8 C 0.038 3.962 9 C 0.512 3.488 10 O -0.504 6.504 11 N -0.650 5.650 12 C 0.123 3.877 13 C -0.110 4.110 14 C -0.145 4.145 15 C -0.115 4.115 16 C -0.128 4.128 17 C -0.104 4.104 18 S 0.031 5.969 19 C -0.545 4.545 20 H 0.096 0.904 21 C 0.078 3.922 22 N -0.865 5.865 23 Si 0.925 3.075 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.214 4.214 28 C -0.024 4.024 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.414 0.586 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.274 0.726 39 H 0.143 0.857 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 8.510 -8.279 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.054 4.054 3 C -0.080 4.080 4 C -0.049 4.049 5 C -0.169 4.169 6 C 0.118 3.882 7 O -0.192 6.192 8 C -0.040 4.040 9 C 0.298 3.702 10 O -0.378 6.378 11 N -0.296 5.296 12 C 0.022 3.978 13 C -0.132 4.132 14 C -0.169 4.169 15 C -0.136 4.136 16 C -0.154 4.154 17 C -0.222 4.222 18 S 0.285 5.715 19 C -0.692 4.692 20 H 0.113 0.887 21 C -0.132 4.132 22 N -0.499 5.499 23 Si 0.750 3.250 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 C -0.233 4.233 28 C -0.045 4.045 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.251 0.749 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.938 8.109 -8.651 17.550 hybrid contribution 2.435 -0.294 1.043 2.665 sum -10.503 7.814 -7.609 15.142 Atomic orbital electron populations 1.81269 1.12120 1.09431 1.07443 1.25652 0.92560 0.93433 0.93789 1.15921 0.84412 1.11055 0.96652 1.20968 0.92984 0.94296 0.96651 1.20387 0.93075 1.05522 0.97885 1.19370 0.82322 0.92397 0.94110 1.86152 1.15882 1.81528 1.35624 1.22581 0.91199 1.02989 0.87278 1.19909 0.87550 0.78619 0.84155 1.90715 1.76670 1.44934 1.25481 1.43172 1.05294 1.63118 1.17973 1.17114 0.80811 0.98326 1.01582 1.21078 0.95835 0.97350 0.98937 1.20773 0.92827 1.01647 1.01654 1.20995 0.98923 0.96778 0.96856 1.21301 0.94220 0.99806 1.00026 1.22441 0.96173 1.00740 1.02816 1.83005 1.14984 1.37361 1.36129 1.23256 0.93118 1.32355 1.20488 0.88668 1.25089 0.98039 0.94729 0.95393 1.69978 1.24798 1.29484 1.25621 0.86042 0.81332 0.78148 0.79465 1.19854 1.20486 1.19179 1.21279 0.94920 1.08137 0.98929 1.20968 0.93334 0.93621 0.96581 0.84219 0.83732 0.87952 0.88052 0.74920 0.84587 0.86850 0.86983 0.84295 0.91619 0.83971 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.87 18.54 41.83 0.78 -4.09 16 2 C 0.26 2.31 15.33 -22.47 -0.34 1.97 16 3 C -0.08 -0.53 5.74 -106.84 -0.61 -1.14 16 4 C -0.03 -0.17 9.75 -39.20 -0.38 -0.55 16 5 C -0.15 -1.06 9.97 -39.50 -0.39 -1.46 16 6 C 0.17 1.36 6.69 -39.04 -0.26 1.10 16 7 O -0.28 -2.96 9.66 -38.91 -0.38 -3.33 16 8 C 0.04 0.34 5.22 36.01 0.19 0.53 16 9 C 0.51 7.08 7.71 -10.99 -0.08 6.99 16 10 O -0.50 -8.73 13.67 -14.36 -0.20 -8.93 16 11 N -0.65 -9.73 5.17 -9.70 -0.05 -9.78 16 12 C 0.12 2.26 6.44 -83.44 -0.54 1.72 16 13 C -0.11 -1.94 8.71 -39.42 -0.34 -2.28 16 14 C -0.15 -2.38 10.04 -39.53 -0.40 -2.77 16 15 C -0.11 -1.95 10.03 -39.58 -0.40 -2.35 16 16 C -0.13 -2.53 9.26 -39.36 -0.36 -2.89 16 17 C -0.10 -2.14 6.12 -38.75 -0.24 -2.38 16 18 S 0.03 0.71 20.37 -107.50 -2.19 -1.48 16 19 C -0.55 -13.77 9.08 30.90 0.28 -13.49 16 20 H 0.10 2.31 4.81 -52.49 -0.25 2.06 16 21 C 0.08 1.97 5.49 -17.47 -0.10 1.87 16 22 N -0.87 -22.84 13.22 55.48 0.73 -22.11 16 23 Si 0.92 19.47 29.55 -169.99 -5.02 14.45 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.21 -1.38 9.01 -39.50 -0.36 -1.74 16 28 C -0.02 -0.15 9.75 -39.20 -0.38 -0.53 16 29 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.10 0.70 7.64 -51.93 -0.40 0.30 16 32 H 0.10 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.41 5.52 7.65 -40.82 -0.31 5.21 16 34 H 0.14 2.34 5.79 -52.49 -0.30 2.04 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.14 2.85 4.93 -52.49 -0.26 2.59 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.14 0.66 6.28 -52.48 -0.33 0.33 16 40 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -31.68 369.20 -8.99 -40.67 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.50 Total: 6.44 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -4.72 Total: -17.40 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 1.46 Total: -35.98 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.57 Total: -12.26 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.19 Total: -1.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.68 -8.99 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003363139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.839 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds