Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31657 * 1 3 3 Si 1.86805 * 120.00358 * 2 1 4 4 H 1.48503 * 109.46827 * 240.27025 * 3 2 1 5 5 H 1.48498 * 109.47008 * 0.26825 * 3 2 1 6 6 H 1.48493 * 109.47340 * 120.27223 * 3 2 1 7 7 C 1.38628 * 119.99746 * 180.27100 * 2 1 3 8 8 H 1.08001 * 120.00283 * 179.72794 * 7 2 1 9 9 S 1.76199 * 119.99935 * 359.72540 * 7 2 1 10 10 C 1.76208 * 100.00107 * 180.02562 * 9 7 2 11 11 N 1.31554 * 126.38809 * 359.69185 * 10 9 7 12 12 N 1.28512 * 110.03472 * 179.88170 * 11 10 9 13 13 C 1.31520 * 109.95107 * 0.38568 * 12 11 10 14 14 C 1.47746 * 126.44496 * 179.76201 * 13 12 11 15 15 C 1.39609 * 120.15798 * 188.99654 * 14 13 12 16 16 C 1.37923 * 119.87156 * 179.77020 * 15 14 13 17 17 C 1.38405 * 120.20240 * 0.51287 * 16 15 14 18 18 C 1.38294 * 120.32902 * 359.74288 * 17 16 15 19 19 C 1.38220 * 120.12066 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.10377 * 179.97438 * 19 18 17 21 21 N 1.36774 * 126.39105 * 179.97438 * 10 9 7 22 22 C 1.46495 * 127.15801 * 359.94849 * 21 10 9 23 23 C 1.50704 * 109.47401 * 83.99320 * 22 21 10 24 24 C 1.38230 * 120.00166 * 276.80310 * 23 22 21 25 25 C 1.38243 * 119.99992 * 179.76229 * 24 23 22 26 26 C 1.38230 * 119.99605 * 0.50717 * 25 24 23 27 27 C 1.38243 * 120.00401 * 359.74752 * 26 25 24 28 28 C 1.38231 * 119.99828 * 359.97438 * 27 26 25 29 29 H 0.97001 * 119.99678 * 359.73547 * 1 2 3 30 30 H 1.08000 * 120.06674 * 0.02562 * 15 14 13 31 31 H 1.08000 * 119.89756 * 180.23314 * 16 15 14 32 32 H 1.08007 * 119.83723 * 179.76274 * 17 16 15 33 33 H 1.08001 * 119.93896 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47283 * 203.99480 * 22 21 10 35 35 H 1.09003 * 109.47425 * 323.99508 * 22 21 10 36 36 H 1.08000 * 120.00173 * 359.97438 * 24 23 22 37 37 H 1.08000 * 120.00086 * 180.22746 * 25 24 23 38 38 H 1.08006 * 120.00066 * 179.72477 * 26 25 24 39 39 H 1.07997 * 119.99938 * 179.97438 * 27 26 25 40 40 H 1.07994 * 120.00462 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 3.0995 1.6991 -1.2158 5 1 1.2858 2.7465 0.0066 6 1 3.1094 1.6935 1.2091 7 6 2.0097 -1.2006 -0.0057 8 1 3.0897 -1.2007 -0.0101 9 16 1.1286 -2.7265 -0.0056 10 6 2.4783 -3.8592 -0.0131 11 7 3.7569 -3.5497 -0.0229 12 7 4.4689 -4.6195 -0.0234 13 6 3.6884 -5.6780 -0.0222 14 6 4.1240 -7.0898 -0.0272 15 6 3.1907 -8.1112 -0.2141 16 6 3.6046 -9.4268 -0.2224 17 6 4.9403 -9.7377 -0.0357 18 6 5.8711 -8.7329 0.1554 19 6 5.4720 -7.4096 0.1605 20 9 6.3815 -6.4283 0.3477 21 7 2.3922 -5.2242 -0.0151 22 6 1.1712 -6.0337 -0.0106 23 6 0.6633 -6.1849 -1.4214 24 6 -0.1138 -5.1911 -1.9864 25 6 -0.5756 -5.3275 -3.2823 26 6 -0.2689 -6.4625 -4.0093 27 6 0.5039 -7.4588 -3.4424 28 6 0.9704 -7.3197 -2.1486 29 1 -0.4850 0.8401 0.0039 30 1 2.1473 -7.8714 -0.3559 31 1 2.8835 -10.2170 -0.3707 32 1 5.2573 -10.7702 -0.0395 33 1 6.9118 -8.9826 0.3001 34 1 1.3892 -7.0177 0.4045 35 1 0.4119 -5.5428 0.5982 36 1 -0.3573 -4.3065 -1.4167 37 1 -1.1796 -4.5494 -3.7250 38 1 -0.6334 -6.5712 -5.0202 39 1 0.7431 -8.3457 -4.0103 40 1 1.5737 -8.0981 -1.7055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003562935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = 100.556490 kcal Electronic energy + Delta-G solvation = -28249.095951 eV Core-core repulsion = 24264.465916 eV Total energy + Delta-G solvation = -3984.630035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.085 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.64176 -42.11632 -39.39466 -38.81662 -35.12073 -32.70967 -32.36265 -31.37227 -30.97396 -30.52788 -28.78997 -26.66506 -25.73463 -23.76164 -23.37101 -22.39211 -21.80112 -21.31797 -20.53619 -18.16161 -17.67561 -17.16300 -16.78429 -16.23418 -15.89818 -15.82041 -15.42826 -15.30135 -14.99657 -14.96040 -14.74382 -14.37490 -13.95471 -13.30713 -13.23176 -13.18890 -12.99350 -12.64075 -12.55149 -12.27055 -12.08114 -11.52392 -11.44948 -11.30204 -11.14404 -11.06631 -10.72779 -10.60603 -10.24769 -10.15834 -9.85858 -9.73430 -9.30327 -8.98482 -8.94225 -8.89618 -8.82330 -8.36808 -6.79084 -6.51569 -4.25805 0.70302 1.02424 1.20623 1.43730 2.38076 2.40213 3.18275 3.20907 3.21955 3.29101 3.33292 3.76511 3.85167 3.97730 4.18103 4.29581 4.46785 4.58915 4.60548 4.68663 4.85764 4.93061 4.95725 5.01199 5.02093 5.09465 5.22464 5.34156 5.50213 5.55215 5.63382 5.71200 5.86399 5.93937 5.99691 6.04867 6.14369 6.16578 6.35444 6.42852 6.54088 6.58176 6.64579 6.71485 6.99864 7.24673 7.53556 8.33590 9.01137 9.36942 10.56502 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.004080 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.973081 B = 6861.281614 C = 9136.557544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.105 0.895 9 S 0.144 5.856 10 C 0.179 3.821 11 N -0.301 5.301 12 N -0.253 5.253 13 C 0.162 3.838 14 C -0.018 4.018 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.152 4.152 19 C 0.130 3.870 20 F -0.115 7.115 21 N -0.467 5.467 22 C 0.136 3.864 23 C -0.118 4.118 24 C -0.085 4.085 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.126 4.126 28 C -0.117 4.117 29 H 0.275 0.725 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -20.916 -3.090 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.683 4.683 8 H 0.123 0.877 9 S 0.378 5.622 10 C -0.190 4.190 11 N -0.148 5.148 12 N -0.095 5.095 13 C -0.103 4.103 14 C -0.022 4.022 15 C -0.143 4.143 16 C -0.145 4.145 17 C -0.112 4.112 18 C -0.170 4.170 19 C 0.108 3.892 20 F -0.093 7.093 21 N -0.163 5.163 22 C 0.014 3.986 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.131 4.131 27 C -0.144 4.144 28 C -0.136 4.136 29 H 0.085 0.915 30 H 0.171 0.829 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.794 -19.950 -3.053 20.198 hybrid contribution 0.815 0.641 -0.059 1.039 sum 0.021 -19.310 -3.113 19.559 Atomic orbital electron populations 1.69934 1.06016 1.28626 1.46756 1.25046 0.95195 0.99590 0.93319 0.85973 0.79097 0.79559 0.79623 1.19388 1.20750 1.19371 1.23208 0.97275 0.89073 1.58781 0.87669 1.83174 0.97755 0.95536 1.85773 1.28439 1.02316 0.85368 1.02917 1.74819 0.98921 1.18471 1.22548 1.74398 1.26234 0.94193 1.14706 1.22267 0.81319 0.94541 1.12136 1.17554 0.92340 0.88433 1.03876 1.21965 1.00428 0.92193 0.99726 1.21051 0.96326 0.95797 1.01294 1.21058 0.92705 0.99097 0.98372 1.21107 1.01406 0.90547 1.03979 1.17615 0.85554 0.85607 1.00391 1.91606 1.65010 1.60958 1.91718 1.46279 1.05985 1.05690 1.58376 1.21007 0.85560 0.96877 0.95187 1.19947 1.00109 0.95988 0.95904 1.21504 0.95127 0.97956 0.95780 1.21234 1.00110 0.97752 0.94419 1.21228 0.98072 0.94083 0.99681 1.21058 0.98784 0.99344 0.95205 1.21367 0.99517 0.97628 0.95047 0.91527 0.82943 0.84963 0.84914 0.84316 0.87220 0.87345 0.84239 0.85521 0.86101 0.86058 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 13.22 55.48 0.73 -23.23 16 2 C 0.08 2.09 5.49 -17.48 -0.10 2.00 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.88 9.37 30.88 0.29 -14.59 16 8 H 0.11 3.06 6.92 -52.49 -0.36 2.69 16 9 S 0.14 3.48 19.69 -107.50 -2.12 1.36 16 10 C 0.18 4.19 8.06 -87.89 -0.71 3.49 16 11 N -0.30 -7.82 11.03 30.77 0.34 -7.48 16 12 N -0.25 -6.06 10.95 32.56 0.36 -5.70 16 13 C 0.16 3.25 7.75 -153.82 -1.19 2.06 16 14 C -0.02 -0.29 5.88 -104.91 -0.62 -0.90 16 15 C -0.12 -1.43 7.67 -39.19 -0.30 -1.73 16 16 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 17 C -0.09 -0.78 10.04 -39.50 -0.40 -1.18 16 18 C -0.15 -1.62 10.01 -39.57 -0.40 -2.02 16 19 C 0.13 1.94 7.29 -39.00 -0.28 1.66 16 20 F -0.11 -2.03 15.86 2.25 0.04 -2.00 16 21 N -0.47 -8.98 2.82 -115.31 -0.32 -9.31 16 22 C 0.14 1.96 5.53 -5.19 -0.03 1.93 16 23 C -0.12 -1.66 5.46 -104.62 -0.57 -2.23 16 24 C -0.08 -1.28 9.66 -39.58 -0.38 -1.67 16 25 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 26 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 28 C -0.12 -1.41 9.25 -39.58 -0.37 -1.77 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.15 1.61 1.65 -52.49 -0.09 1.52 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.11 1.24 4.89 -51.93 -0.25 0.98 16 35 H 0.11 1.48 8.03 -51.93 -0.42 1.07 16 36 H 0.14 2.33 6.17 -52.49 -0.32 2.00 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.28 4.64 -52.49 -0.24 1.04 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -33.56 355.00 -10.65 -44.21 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.36 Total: 2.44 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -6.64 Total: -21.89 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 1.10 Total: -45.72 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.12 Total: 1.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.56 -10.65 -44.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003562935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.763 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds