Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46758 * 195.53239 * 3 2 1 5 5 C 1.52999 * 109.46735 * 182.15495 * 4 3 2 6 6 C 1.53004 * 110.11471 * 177.82490 * 5 4 3 7 7 C 1.50703 * 109.46692 * 54.79768 * 6 5 4 8 8 H 1.07993 * 120.00330 * 355.57737 * 7 6 5 9 9 C 1.37882 * 119.99593 * 175.57071 * 7 6 5 10 10 N 1.31514 * 120.00129 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47108 * 90.00031 * 11 9 7 13 13 H 1.48491 * 109.46992 * 210.00148 * 11 9 7 14 14 H 1.48501 * 109.46703 * 330.00109 * 11 9 7 15 15 C 1.50891 * 110.13683 * 299.47820 * 5 4 3 16 16 C 1.37938 * 132.04719 * 299.16847 * 15 5 4 17 17 C 1.38352 * 120.04822 * 179.97438 * 16 15 5 18 18 C 1.38347 * 120.12487 * 0.02562 * 17 16 15 19 19 C 1.37910 * 120.24600 * 0.02562 * 18 17 16 20 20 C 1.39176 * 107.72023 * 119.15038 * 15 5 4 21 21 C 1.48536 * 109.62140 * 0.02562 * 20 15 5 22 22 N 1.32468 * 130.31343 * 180.02562 * 21 20 15 23 23 C 1.33740 * 121.49781 * 180.13885 * 22 21 20 24 24 C 1.40712 * 120.90820 * 179.97438 * 23 22 21 25 25 C 1.36059 * 119.77339 * 179.88270 * 24 23 22 26 26 C 1.39344 * 121.09011 * 0.03647 * 25 24 23 27 27 C 1.36189 * 120.84802 * 359.96790 * 26 25 24 28 28 C 1.40336 * 119.63016 * 0.02562 * 27 26 25 29 29 C 1.40893 * 121.36188 * 180.02562 * 28 27 26 30 30 C 1.36107 * 118.24278 * 179.97438 * 29 28 27 31 31 H 1.08996 * 109.47536 * 75.52938 * 3 2 1 32 32 H 1.09000 * 109.46850 * 315.52622 * 3 2 1 33 33 H 1.08994 * 109.47452 * 62.15552 * 4 3 2 34 34 H 1.09004 * 109.47030 * 302.15118 * 4 3 2 35 35 H 1.08990 * 109.47583 * 174.80186 * 6 5 4 36 36 H 1.09003 * 109.46877 * 294.80230 * 6 5 4 37 37 H 0.96997 * 119.99765 * 179.97438 * 10 9 7 38 38 H 1.08005 * 119.97400 * 0.02562 * 16 15 5 39 39 H 1.07997 * 119.93688 * 179.97438 * 17 16 15 40 40 H 1.08003 * 119.88102 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.03701 * 179.97438 * 19 18 17 42 42 H 1.08003 * 120.11151 * 359.88147 * 24 23 22 43 43 H 1.08003 * 119.45537 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.57936 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.18820 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.87453 * 359.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.3908 0.3863 5 6 4.6464 1.4063 0.3341 6 6 5.1700 2.8052 0.6656 7 6 4.6141 3.2477 1.9946 8 1 3.8980 2.6280 2.5138 9 6 5.0198 4.4437 2.5478 10 7 5.8915 5.1986 1.9155 11 14 4.3313 4.9919 4.1955 12 1 5.1955 4.4785 5.2886 13 1 4.2956 6.4755 4.2481 14 1 2.9556 4.4574 4.3596 15 6 5.2095 0.3974 1.3046 16 6 5.1068 0.2764 2.6748 17 6 5.7371 -0.7683 3.3272 18 6 6.4722 -1.6935 2.6079 19 6 6.5816 -1.5802 1.2378 20 6 5.9466 -0.5289 0.5726 21 6 5.8998 -0.1759 -0.8695 22 7 6.4517 -0.7718 -1.9160 23 6 6.2949 -0.2940 -3.1552 24 6 6.8872 -0.9366 -4.2580 25 6 6.7106 -0.4319 -5.5091 26 6 5.9505 0.7166 -5.7210 27 6 5.3617 1.3664 -4.6790 28 6 5.5222 0.8743 -3.3746 29 6 4.9290 1.5172 -2.2701 30 6 5.1257 0.9849 -1.0330 31 1 2.9716 -0.2560 -0.9950 32 1 2.9717 -0.7325 0.7200 33 1 2.7858 1.6315 1.3963 34 1 2.7225 2.1293 -0.3115 35 1 6.2585 2.7832 0.7162 36 1 4.8564 3.5038 -0.1101 37 1 6.1767 6.0401 2.3045 38 1 4.5331 0.9971 3.2386 39 1 5.6557 -0.8611 4.4001 40 1 6.9623 -2.5077 3.1211 41 1 7.1567 -2.3042 0.6797 42 1 7.4800 -1.8275 -4.1118 43 1 7.1672 -0.9295 -6.3519 44 1 5.8266 1.0964 -6.7245 45 1 4.7745 2.2555 -4.8554 46 1 4.3339 2.4088 -2.4018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003663259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = 104.122834 kcal Electronic energy + Delta-G solvation = -30626.436270 eV Core-core repulsion = 26831.236242 eV Total energy + Delta-G solvation = -3795.200028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.41869 -39.57143 -37.15391 -36.63472 -35.60388 -33.11679 -32.83522 -32.08640 -30.80607 -29.87197 -29.00788 -28.91170 -25.85487 -24.61539 -23.52521 -22.77007 -22.26443 -21.73357 -21.03874 -19.15797 -17.88056 -17.33406 -17.26125 -16.40919 -16.25869 -15.47291 -15.11468 -14.89183 -14.61301 -14.36531 -14.34204 -14.16463 -14.03290 -13.67131 -13.29705 -13.22715 -13.08210 -12.83332 -12.53207 -12.35914 -12.33093 -12.11739 -11.78246 -11.65981 -11.53321 -11.42881 -11.33450 -11.08330 -10.92410 -10.84724 -10.70058 -10.60235 -10.35327 -10.03394 -9.71892 -9.29537 -9.08067 -8.97203 -8.49248 -8.37937 -8.11696 -7.81327 -6.12879 -4.16058 0.34538 0.82942 1.67769 1.79035 2.20929 2.92388 2.94415 3.06825 3.23757 3.32043 3.32718 4.02181 4.02356 4.17121 4.33549 4.41226 4.47222 4.71125 4.81176 4.93048 5.01725 5.15947 5.21024 5.23141 5.26565 5.30957 5.35387 5.39440 5.41849 5.49357 5.60793 5.73989 5.84134 5.86923 5.94589 6.02464 6.10396 6.14888 6.19330 6.33195 6.37666 6.44023 6.50765 6.53257 6.61261 6.66353 6.75944 6.84203 6.95133 7.06318 7.26236 7.46039 7.53184 7.72095 7.82358 8.06585 8.19301 8.86566 9.48207 10.98027 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.003944 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.259469 B = 7097.835034 C = 7465.984350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.218 3.782 3 C -0.036 4.036 4 C -0.085 4.085 5 C 0.024 3.976 6 C 0.048 3.952 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.064 3.936 10 N -0.890 5.890 11 Si 0.884 3.116 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.272 1.272 15 C -0.023 4.023 16 C -0.086 4.086 17 C -0.105 4.105 18 C -0.137 4.137 19 C -0.078 4.078 20 C -0.077 4.077 21 C 0.203 3.797 22 N -0.475 5.475 23 C 0.132 3.868 24 C -0.093 4.093 25 C -0.108 4.108 26 C -0.126 4.126 27 C -0.090 4.090 28 C -0.099 4.099 29 C -0.045 4.045 30 C -0.115 4.115 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -11.572 -8.385 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.099 4.099 3 C -0.076 4.076 4 C -0.124 4.124 5 C 0.023 3.977 6 C 0.011 3.989 7 C -0.557 4.557 8 H 0.082 0.918 9 C -0.138 4.138 10 N -0.528 5.528 11 Si 0.712 3.288 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.025 4.025 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.155 4.155 19 C -0.097 4.097 20 C -0.078 4.078 21 C 0.053 3.947 22 N -0.183 5.183 23 C 0.009 3.991 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.144 4.144 27 C -0.109 4.109 28 C -0.101 4.101 29 C -0.070 4.070 30 C -0.117 4.117 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.147 0.853 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.434 -12.181 -8.414 14.811 hybrid contribution -0.017 1.229 0.723 1.426 sum 0.417 -10.952 -7.691 13.390 Atomic orbital electron populations 1.81169 1.13097 1.09212 1.09475 1.29310 0.95315 0.92665 0.92645 1.19566 0.81256 1.01925 1.04836 1.21504 0.93376 0.92954 1.04554 1.18875 0.94031 0.98463 0.86300 1.19104 0.97003 0.85561 0.97222 1.21134 1.25505 1.04680 1.04427 0.91786 1.24952 0.94912 0.96689 0.97281 1.69946 1.31552 1.12782 1.38514 0.86707 0.79545 0.78073 0.84454 1.20556 1.21275 1.19686 1.20138 0.95346 0.93248 0.93742 1.20745 0.99728 0.97213 0.92705 1.21238 0.96922 0.94451 0.99761 1.20918 1.00887 1.00076 0.93622 1.20815 0.98116 0.96738 0.94051 1.18913 1.01966 0.97616 0.89295 1.20515 0.91620 0.90898 0.91638 1.67624 1.21077 1.31950 0.97637 1.18780 0.96430 0.92832 0.91025 1.20751 0.99593 1.00070 0.90796 1.20806 0.98784 0.96416 0.96816 1.20850 0.98387 0.96118 0.99095 1.20966 0.99183 0.99555 0.91190 1.18753 0.99944 0.96842 0.94525 1.20689 0.97520 0.98741 0.90050 1.21067 0.98684 0.96069 0.95919 0.88319 0.87559 0.88699 0.90508 0.95484 0.95771 0.92845 0.84235 0.85921 0.86171 0.86103 0.85096 0.85719 0.85866 0.85311 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.60 18.54 42.16 0.78 -6.82 16 2 C 0.22 3.16 15.43 -20.76 -0.32 2.84 16 3 C -0.04 -0.46 5.18 -29.52 -0.15 -0.61 16 4 C -0.09 -1.29 3.95 -26.73 -0.11 -1.40 16 5 C 0.02 0.41 0.53 -156.63 -0.08 0.33 16 6 C 0.05 1.06 4.08 -27.88 -0.11 0.94 16 7 C -0.52 -12.22 7.30 -34.44 -0.25 -12.47 16 8 H 0.06 1.40 4.62 -52.49 -0.24 1.16 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -24.49 13.29 55.43 0.74 -23.76 16 11 Si 0.88 19.72 29.54 -169.99 -5.02 14.70 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 C -0.02 -0.39 3.64 -104.29 -0.38 -0.77 16 16 C -0.09 -1.37 9.28 -39.65 -0.37 -1.73 16 17 C -0.11 -1.42 10.05 -39.50 -0.40 -1.81 16 18 C -0.14 -1.75 10.02 -39.66 -0.40 -2.14 16 19 C -0.08 -1.12 10.10 -39.16 -0.40 -1.51 16 20 C -0.08 -1.25 6.19 -104.76 -0.65 -1.90 16 21 C 0.20 3.43 7.34 -82.50 -0.61 2.82 16 22 N -0.48 -7.94 10.39 -7.27 -0.08 -8.01 16 23 C 0.13 2.01 6.62 -84.75 -0.56 1.45 16 24 C -0.09 -1.16 9.98 -39.43 -0.39 -1.56 16 25 C -0.11 -1.11 9.94 -39.95 -0.40 -1.50 16 26 C -0.13 -1.28 9.96 -39.91 -0.40 -1.68 16 27 C -0.09 -1.05 9.77 -39.53 -0.39 -1.44 16 28 C -0.10 -1.42 5.75 -106.75 -0.61 -2.03 16 29 C -0.04 -0.67 9.88 -39.34 -0.39 -1.06 16 30 C -0.12 -1.89 3.41 -104.46 -0.36 -2.25 16 31 H 0.10 1.23 7.07 -51.93 -0.37 0.86 16 32 H 0.11 1.29 7.35 -51.93 -0.38 0.90 16 33 H 0.09 1.52 6.38 -51.93 -0.33 1.19 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.14 2.29 6.18 -52.48 -0.32 1.96 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 44 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -29.56 385.73 -11.01 -40.57 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.43 Total: 3.46 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -7.81 Total: -25.96 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 1.44 Total: -38.59 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.56 -11.01 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003663259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.694 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds