Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 117.00219 * 2 1 4 4 C 1.38814 * 120.01982 * 0.30749 * 3 2 1 5 5 C 1.38164 * 120.07894 * 180.25139 * 4 3 2 6 6 C 1.38169 * 120.12155 * 359.43883 * 5 4 3 7 7 C 1.38862 * 120.04354 * 0.28151 * 6 5 4 8 8 N 1.40120 * 120.04048 * 180.02562 * 7 6 5 9 9 C 1.36863 * 127.18023 * 244.68679 * 8 7 6 10 10 S 1.76200 * 126.39747 * 359.97438 * 9 8 7 11 11 C 1.76194 * 99.99984 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00074 * 359.97438 * 11 10 9 13 13 C 1.38686 * 120.00275 * 180.02562 * 11 10 9 14 14 N 1.31624 * 119.99771 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00199 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47316 * 59.99662 * 15 13 11 17 17 H 1.48507 * 109.46940 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47146 * 299.99380 * 15 13 11 19 19 N 1.31683 * 107.20318 * 179.83956 * 9 8 7 20 20 N 1.28510 * 110.07381 * 0.43943 * 19 9 8 21 21 C 1.31539 * 109.99153 * 359.72460 * 20 19 9 22 22 C 1.47668 * 126.45582 * 180.02562 * 21 20 19 23 23 C 1.39789 * 120.13510 * 359.69132 * 22 21 20 24 24 N 1.31912 * 119.83292 * 179.78219 * 23 22 21 25 25 C 1.32280 * 120.12612 * 0.47975 * 24 23 22 26 26 C 1.38432 * 120.27191 * 359.76905 * 25 24 23 27 27 N 1.32001 * 120.16332 * 359.97438 * 26 25 24 28 28 C 1.38583 * 120.02417 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47046 * 299.99825 * 1 2 3 30 30 H 1.08999 * 109.47186 * 59.99330 * 1 2 3 31 31 H 1.08993 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.96143 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.94164 * 179.72462 * 5 4 3 34 34 H 1.08006 * 119.97839 * 180.25947 * 6 5 4 35 35 H 0.96996 * 119.99935 * 180.02562 * 14 13 11 36 36 H 1.07996 * 120.08367 * 0.02562 * 23 22 21 37 37 H 1.07998 * 119.86142 * 179.75417 * 25 24 23 38 38 H 1.08003 * 119.91251 * 179.97438 * 26 25 24 39 39 H 1.08002 * 120.06271 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3753 0.0065 5 6 1.9165 3.6070 0.0012 6 6 3.2960 3.6837 0.0012 7 6 4.0569 2.5220 0.0006 8 7 5.4559 2.5998 0.0012 9 6 6.3080 2.1810 -0.9845 10 16 5.8513 1.4324 -2.5128 11 6 7.4457 1.1855 -3.2210 12 1 8.3296 1.4906 -2.6807 13 6 7.5655 0.6003 -4.4726 14 7 6.4881 0.2290 -5.1313 15 14 9.2558 0.3392 -5.2237 16 1 10.0605 -0.5401 -4.3381 17 1 9.1118 -0.2997 -6.5566 18 1 9.9386 1.6493 -5.3735 19 7 7.5326 2.4447 -0.5787 20 7 7.5043 2.9861 0.5864 21 6 6.2601 3.1078 0.9956 22 6 5.8109 3.6820 2.2798 23 6 6.7477 4.1572 3.2020 24 7 6.3397 4.6729 4.3455 25 6 5.0478 4.7319 4.6238 26 6 4.1161 4.2580 3.7162 27 7 4.5119 3.7443 2.5664 28 6 3.4299 1.2839 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2120 2.3185 0.0111 33 1 1.3264 4.5116 0.0018 34 1 3.7830 4.6477 0.0014 35 1 6.5719 -0.1806 -6.0066 36 1 7.8028 4.1059 2.9772 37 1 4.7187 5.1514 5.5629 38 1 3.0628 4.3086 3.9495 39 1 4.0195 0.3790 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004093405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = 124.996160 kcal Electronic energy + Delta-G solvation = -27991.994763 eV Core-core repulsion = 24028.344472 eV Total energy + Delta-G solvation = -3963.650290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.084 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37719 -40.87069 -40.05554 -37.64521 -34.61551 -34.01110 -32.73975 -32.56497 -30.74962 -29.45518 -29.21555 -27.35838 -25.88014 -24.96588 -24.64836 -23.37763 -22.57550 -21.56095 -20.81943 -18.98702 -17.84467 -17.37608 -17.11465 -16.72653 -16.51219 -16.12242 -15.82936 -15.77063 -15.39655 -15.11667 -14.99614 -14.61660 -14.25638 -13.78193 -13.57804 -13.11612 -12.99006 -12.70222 -12.47873 -11.97179 -11.73129 -11.58283 -11.45280 -11.24057 -11.18253 -11.15727 -11.10138 -10.83772 -10.36638 -10.26710 -10.21785 -10.08495 -9.41707 -9.27748 -8.96076 -8.81564 -8.64430 -8.17237 -6.87978 -6.54124 -4.29027 0.36361 0.95799 1.14490 1.45542 2.23135 2.26407 2.96000 3.18094 3.20434 3.26333 3.26958 3.33642 3.66760 3.72181 3.79635 3.95951 4.13624 4.32590 4.59451 4.71840 4.90304 4.91010 4.94239 4.97129 5.02675 5.04834 5.06904 5.18511 5.32668 5.36671 5.44623 5.46812 5.73914 5.87574 6.04094 6.18039 6.20320 6.33017 6.34649 6.47644 6.57380 7.12481 7.29257 7.40173 7.49911 7.63087 8.28909 8.96990 9.14019 10.53461 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.008706 B = 0.004159 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.341041 B = 6730.204594 C = 9464.241677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.138 3.862 4 C -0.199 4.199 5 C -0.072 4.072 6 C -0.109 4.109 7 C 0.182 3.818 8 N -0.425 5.425 9 C 0.185 3.815 10 S 0.174 5.826 11 C -0.543 4.543 12 H 0.107 0.893 13 C 0.079 3.921 14 N -0.874 5.874 15 Si 0.934 3.066 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.268 1.268 19 N -0.297 5.297 20 N -0.243 5.243 21 C 0.172 3.828 22 C 0.174 3.826 23 C 0.087 3.913 24 N -0.433 5.433 25 C 0.038 3.962 26 C 0.060 3.940 27 N -0.427 5.427 28 C -0.130 4.130 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.277 0.723 36 H 0.181 0.819 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 5.723 14.108 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.092 3.908 4 C -0.218 4.218 5 C -0.091 4.091 6 C -0.129 4.129 7 C 0.091 3.909 8 N -0.119 5.119 9 C -0.182 4.182 10 S 0.410 5.590 11 C -0.692 4.692 12 H 0.125 0.875 13 C -0.131 4.131 14 N -0.508 5.508 15 Si 0.759 3.241 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.193 1.193 19 N -0.144 5.144 20 N -0.087 5.087 21 C -0.094 4.094 22 C 0.033 3.967 23 C -0.076 4.076 24 N -0.147 5.147 25 C -0.122 4.122 26 C -0.102 4.102 27 N -0.144 5.144 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.198 0.802 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.839 5.196 13.342 19.913 hybrid contribution 0.430 0.170 0.030 0.464 sum -13.409 5.366 13.372 19.683 Atomic orbital electron populations 1.23053 0.78422 1.03939 1.01255 1.86105 1.21270 1.26582 1.88714 1.18537 0.91261 0.84388 0.96627 1.21234 0.99967 0.92170 1.08445 1.20642 0.93372 0.97124 0.97938 1.20793 0.93673 0.96915 1.01564 1.16935 0.79457 0.93394 1.01124 1.43513 1.05013 1.48743 1.14632 1.28795 0.88178 1.01876 0.99372 1.83767 1.12873 1.63972 0.98431 1.23275 0.92785 1.47300 1.05809 0.87486 1.25092 0.99165 0.93511 0.95364 1.69931 1.28734 1.38002 1.14151 0.85944 0.81172 0.79184 0.77771 1.19289 1.20712 1.19298 1.74903 1.16356 1.18540 1.04613 1.74218 1.14761 1.13192 1.06546 1.21881 0.87511 1.08518 0.91453 1.19134 0.90184 0.96122 0.91245 1.23747 1.01834 0.93402 0.88582 1.68520 1.17151 1.11362 1.17633 1.23812 0.89534 0.98061 1.00820 1.23689 1.01861 0.94962 0.89687 1.68561 1.15540 1.11734 1.18565 1.20246 0.92127 0.97595 1.05072 0.92776 0.92495 0.88274 0.85200 0.85217 0.86112 0.91358 0.80176 0.81340 0.81225 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.21 10.49 -19.43 -0.20 -4.42 16 3 C 0.14 1.97 6.68 -39.24 -0.26 1.71 16 4 C -0.20 -2.31 9.04 -39.40 -0.36 -2.66 16 5 C -0.07 -0.84 10.03 -39.63 -0.40 -1.24 16 6 C -0.11 -1.62 8.32 -39.38 -0.33 -1.95 16 7 C 0.18 3.20 4.66 -83.64 -0.39 2.81 16 8 N -0.42 -8.64 2.86 -58.14 -0.17 -8.80 16 9 C 0.18 4.36 7.99 -87.70 -0.70 3.66 16 10 S 0.17 4.38 21.54 -107.50 -2.32 2.06 16 11 C -0.54 -15.00 9.37 30.90 0.29 -14.71 16 12 H 0.11 3.02 6.92 -52.49 -0.36 2.66 16 13 C 0.08 2.11 5.49 -17.47 -0.10 2.02 16 14 N -0.87 -24.07 13.22 55.48 0.73 -23.34 16 15 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 N -0.30 -7.31 11.03 30.81 0.34 -6.97 16 20 N -0.24 -5.33 11.89 32.60 0.39 -4.94 16 21 C 0.17 3.36 7.77 -153.58 -1.19 2.17 16 22 C 0.17 2.77 6.75 -82.86 -0.56 2.21 16 23 C 0.09 1.23 10.89 -16.94 -0.18 1.05 16 24 N -0.43 -5.44 10.49 -12.70 -0.13 -5.57 16 25 C 0.04 0.37 11.22 -17.29 -0.19 0.17 16 26 C 0.06 0.59 11.22 -17.41 -0.20 0.40 16 27 N -0.43 -5.95 7.75 -9.67 -0.07 -6.03 16 28 C -0.13 -2.22 9.82 -39.25 -0.39 -2.60 16 29 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 30 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.18 2.44 7.87 -52.49 -0.41 2.03 16 37 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.14 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -32.93 362.35 -8.53 -41.46 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.57 Total: 0.88 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.96 Total: -5.73 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 1.09 Total: -55.66 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.32 Total: 2.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.93 -8.53 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004093405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.458 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds