Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38283 * 119.92782 * 2 1 4 4 C 1.38109 * 120.06925 * 179.97438 * 3 2 1 5 5 C 1.38877 * 119.93111 * 0.02562 * 4 3 2 6 6 N 1.39886 * 120.07361 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00182 * 45.24751 * 6 5 4 8 8 S 1.71207 * 119.99469 * 355.85126 * 7 6 5 9 9 N 1.34769 * 120.00375 * 175.85318 * 7 6 5 10 10 C 1.46504 * 120.00216 * 0.02562 * 9 7 6 11 11 C 1.50697 * 109.46798 * 269.99804 * 10 9 7 12 12 H 1.08000 * 119.99997 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99912 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99745 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99990 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46723 * 90.00505 * 15 13 11 17 17 H 1.48499 * 109.46728 * 210.00211 * 15 13 11 18 18 H 1.48500 * 109.47235 * 330.00102 * 15 13 11 19 19 C 1.46504 * 119.99905 * 179.97438 * 9 7 6 20 20 C 1.53001 * 109.46730 * 90.00569 * 19 9 7 21 21 C 1.50705 * 109.46944 * 180.02562 * 20 19 9 22 22 C 1.38224 * 119.62448 * 125.01817 * 21 20 19 23 23 C 1.38625 * 119.16339 * 179.70081 * 22 21 20 24 24 C 1.38668 * 118.41984 * 0.51300 * 23 22 21 25 25 C 1.38180 * 119.16453 * 359.50539 * 24 23 22 26 26 N 1.31853 * 119.61460 * 304.99313 * 21 20 19 27 27 C 1.38880 * 119.85651 * 0.27384 * 5 4 3 28 28 C 1.38109 * 119.92644 * 359.42643 * 27 5 4 29 29 H 1.09003 * 109.47222 * 89.99730 * 1 2 3 30 30 H 1.09000 * 109.47194 * 209.99555 * 1 2 3 31 31 H 1.08994 * 109.47352 * 329.99684 * 1 2 3 32 32 H 1.07997 * 119.96428 * 359.97438 * 3 2 1 33 33 H 1.08007 * 120.03759 * 179.97438 * 4 3 2 34 34 H 0.97003 * 120.00690 * 225.24594 * 6 5 4 35 35 H 1.09002 * 109.46915 * 29.99894 * 10 9 7 36 36 H 1.09001 * 109.47338 * 150.00033 * 10 9 7 37 37 H 0.97000 * 120.00000 * 180.02562 * 14 13 11 38 38 H 1.08991 * 109.47463 * 330.00153 * 19 9 7 39 39 H 1.09000 * 109.47323 * 209.99882 * 19 9 7 40 40 H 1.08990 * 109.47832 * 60.00012 * 20 19 9 41 41 H 1.08998 * 109.47022 * 299.99345 * 20 19 9 42 42 H 1.08005 * 120.41299 * 359.95203 * 22 21 20 43 43 H 1.08002 * 120.79055 * 180.27300 * 23 22 21 44 44 H 1.08001 * 120.41987 * 179.77974 * 24 23 22 45 45 H 1.08001 * 119.61934 * 180.24883 * 25 24 23 46 46 H 1.08001 * 120.03431 * 179.72543 * 27 5 4 47 47 H 1.07999 * 119.96553 * 180.27589 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2018 0.0005 5 6 4.2739 0.0000 0.0005 6 7 5.6727 0.0000 0.0005 7 6 6.3467 0.8217 0.8294 8 16 5.4939 1.9404 1.8054 9 7 7.6917 0.7629 0.8900 10 6 8.4215 -0.1940 0.0543 11 6 8.5827 -1.4926 0.8016 12 1 8.1820 -1.5948 1.7994 13 6 9.2417 -2.5503 0.2116 14 7 9.7299 -2.4256 -1.0031 15 14 9.4409 -4.1603 1.1377 16 1 8.2827 -5.0438 0.8492 17 1 10.6937 -4.8291 0.7037 18 1 9.5047 -3.8880 2.5961 19 6 8.4242 1.6566 1.7906 20 6 8.5889 0.9830 3.1544 21 6 9.3419 1.9025 4.0811 22 6 8.7900 2.2445 5.3014 23 6 9.4937 3.0859 6.1490 24 6 10.7269 3.5628 5.7311 25 6 11.2147 3.1779 4.4969 26 7 10.5198 2.3712 3.7186 27 6 3.5780 -1.2019 -0.0058 28 6 2.1969 -1.1984 0.0000 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6551 2.1327 -0.0004 33 1 4.1163 2.1382 0.0001 34 1 6.1578 -0.5914 -0.5960 35 1 7.8649 -0.3710 -0.8660 36 1 9.4043 0.2105 -0.1875 37 1 10.1932 -3.1698 -1.4184 38 1 7.8694 2.5871 1.9095 39 1 9.4068 1.8706 1.3701 40 1 9.1438 0.0525 3.0356 41 1 7.6064 0.7690 3.5750 42 1 7.8245 1.8576 5.5925 43 1 9.0893 3.3666 7.1103 44 1 11.3010 4.2232 6.3642 45 1 12.1762 3.5417 4.1659 46 1 4.1163 -2.1381 -0.0103 47 1 1.6551 -2.1327 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004307158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = 75.598304 kcal Electronic energy + Delta-G solvation = -28241.578436 eV Core-core repulsion = 24515.159532 eV Total energy + Delta-G solvation = -3726.418904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11350 -39.78710 -38.33511 -35.66322 -33.43385 -32.83711 -32.17672 -31.28516 -30.67181 -29.07922 -28.06413 -26.16144 -24.37640 -23.94251 -23.30840 -22.65320 -21.55594 -20.89584 -20.36998 -18.05163 -17.41856 -17.00669 -16.60882 -16.03493 -15.61960 -15.21330 -15.18075 -15.10333 -14.83578 -14.22121 -13.88704 -13.72337 -13.60821 -13.46499 -13.23519 -13.15402 -12.92349 -12.65852 -12.57351 -12.16284 -12.04227 -11.78130 -11.55254 -11.42059 -11.28747 -11.25432 -10.99563 -10.79058 -10.73390 -10.66808 -10.14592 -10.01470 -9.75117 -9.27917 -9.00306 -8.82636 -8.74740 -8.68167 -7.76311 -7.21276 -6.56783 -6.43332 -4.54323 1.22859 1.38327 1.40800 1.76679 2.15251 2.54775 3.09185 3.17682 3.18654 3.22476 3.85912 3.95466 4.07850 4.15273 4.48735 4.87316 4.90193 4.92942 5.05163 5.09882 5.16519 5.25571 5.31219 5.44396 5.51844 5.63583 5.65407 5.67414 5.69663 5.79185 5.84393 5.98065 6.04541 6.08294 6.12404 6.25185 6.26862 6.30184 6.44741 6.55961 6.59034 6.67997 6.72902 6.85313 6.86369 6.93631 7.11420 7.31166 7.47743 7.61513 7.66988 7.88378 8.16491 8.52380 9.15404 10.62654 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.007247 B = 0.003744 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3862.544336 B = 7476.563173 C =10398.234038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.065 4.065 5 C 0.134 3.866 6 N -0.632 5.632 7 C 0.573 3.427 8 S -0.696 6.696 9 N -0.535 5.535 10 C 0.222 3.778 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.071 3.929 14 N -0.885 5.885 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.129 3.871 20 C -0.083 4.083 21 C 0.150 3.850 22 C -0.164 4.164 23 C -0.076 4.076 24 C -0.188 4.188 25 C 0.100 3.900 26 N -0.480 5.480 27 C -0.121 4.121 28 C -0.121 4.121 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.417 0.583 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.269 0.731 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.152 0.848 46 H 0.124 0.876 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 6.488 5.012 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.088 4.088 5 C 0.040 3.960 6 N -0.260 5.260 7 C 0.211 3.789 8 S -0.564 6.564 9 N -0.237 5.237 10 C 0.100 3.900 11 C -0.584 4.584 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.522 5.522 15 Si 0.728 3.272 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.196 1.196 19 C 0.006 3.994 20 C -0.122 4.122 21 C 0.012 3.988 22 C -0.184 4.184 23 C -0.102 4.102 24 C -0.208 4.208 25 C -0.058 4.058 26 N -0.189 5.189 27 C -0.142 4.142 28 C -0.141 4.141 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.170 0.830 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.397 6.858 4.683 10.482 hybrid contribution 0.780 -1.702 0.642 1.979 sum -5.617 5.156 5.325 9.300 Atomic orbital electron populations 1.20737 0.91683 1.02410 1.01830 1.19871 0.95709 0.93317 1.00579 1.20790 0.93520 0.97215 1.02444 1.21562 0.93986 0.98481 0.94771 1.17458 0.80753 0.94256 1.03537 1.42300 1.05197 1.39970 1.38554 1.22012 0.85554 0.86756 0.84555 1.92957 1.68092 1.41891 1.53470 1.47610 1.02481 1.35154 1.38410 1.19843 0.93043 0.87420 0.89656 1.21322 1.38549 0.96096 1.02472 0.91488 1.24928 0.94451 0.99108 0.94888 1.69903 1.36174 1.32667 1.13454 0.86430 0.77892 0.82657 0.80253 1.20310 1.20822 1.19558 1.21669 0.96640 0.93022 0.88100 1.20905 1.00021 0.97740 0.93505 1.21237 0.90470 0.94211 0.92894 1.22045 1.01450 0.99611 0.95262 1.21545 0.94245 0.95158 0.99281 1.22059 0.97476 1.02735 0.98509 1.22733 0.98981 0.93423 0.90635 1.67531 1.06794 1.09780 1.34821 1.20965 0.94462 0.96685 1.02097 1.20650 0.93086 0.97394 1.02938 0.91588 0.91921 0.91787 0.86184 0.83426 0.74075 0.94738 0.92674 0.92091 0.88176 0.89222 0.88411 0.89440 0.84702 0.85180 0.85268 0.83038 0.85838 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.09 -1.22 5.88 -104.59 -0.62 -1.84 16 3 C -0.12 -1.70 9.69 -39.61 -0.38 -2.08 16 4 C -0.07 -1.08 7.87 -39.39 -0.31 -1.39 16 5 C 0.13 2.29 5.93 -83.71 -0.50 1.79 16 6 N -0.63 -11.55 5.19 -11.40 -0.06 -11.61 16 7 C 0.57 11.29 7.56 -86.92 -0.66 10.63 16 8 S -0.70 -14.45 24.20 -107.50 -2.60 -17.05 16 9 N -0.53 -10.46 2.46 -177.08 -0.43 -10.89 16 10 C 0.22 4.81 5.01 -5.19 -0.03 4.78 16 11 C -0.55 -13.00 8.93 -34.44 -0.31 -13.31 16 12 H 0.07 1.65 7.42 -52.49 -0.39 1.26 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -22.79 13.29 55.43 0.74 -22.05 16 15 Si 0.90 19.65 29.54 -169.99 -5.02 14.62 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.13 2.35 5.07 -4.04 -0.02 2.33 16 20 C -0.08 -1.45 5.94 -27.88 -0.17 -1.62 16 21 C 0.15 2.40 6.18 -82.59 -0.51 1.89 16 22 C -0.16 -2.27 9.71 -39.44 -0.38 -2.65 16 23 C -0.08 -0.88 10.18 -39.28 -0.40 -1.28 16 24 C -0.19 -2.06 10.11 -39.44 -0.40 -2.46 16 25 C 0.10 1.27 11.18 -17.55 -0.20 1.07 16 26 N -0.48 -7.65 9.88 -9.47 -0.09 -7.75 16 27 C -0.12 -1.86 9.97 -39.39 -0.39 -2.26 16 28 C -0.12 -1.63 9.69 -39.61 -0.38 -2.01 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.15 2.65 6.09 -44.15 -0.27 2.38 16 34 H 0.42 7.59 6.52 -40.82 -0.27 7.32 16 35 H 0.03 0.76 6.31 -51.93 -0.33 0.44 16 36 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 37 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.10 1.87 6.58 -51.93 -0.34 1.53 16 39 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 40 H 0.10 1.90 7.27 -51.93 -0.38 1.52 16 41 H 0.09 1.59 7.84 -51.93 -0.41 1.19 16 42 H 0.14 1.74 7.95 -52.48 -0.42 1.32 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 47 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -28.24 402.78 -13.33 -41.56 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -6.54 Total: 14.53 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -5.38 Total: -7.44 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.15 Total: -52.29 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: -14.45 SS G_CDS: -2.60 Total: -17.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.24 -13.33 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004307158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.162 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds