Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48498 * 109.47161 * 30.00045 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37874 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00812 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99753 * 275.00143 * 10 9 7 12 12 C 1.50698 * 109.47121 * 84.99977 * 11 10 9 13 13 C 1.34515 * 125.79375 * 89.71420 * 12 11 10 14 14 C 1.41375 * 106.84436 * 179.88998 * 13 12 11 15 15 C 1.34517 * 106.84134 * 0.36808 * 14 13 12 16 16 O 1.34303 * 125.78840 * 270.01804 * 12 11 10 17 17 S 1.65602 * 120.00006 * 94.99495 * 10 9 7 18 18 O 1.42097 * 106.40599 * 203.54158 * 17 10 9 19 19 O 1.42097 * 106.40158 * 336.46648 * 17 10 9 20 20 C 1.76208 * 107.21383 * 90.00215 * 17 10 9 21 21 C 1.38238 * 119.98720 * 269.72838 * 20 17 10 22 22 C 1.38214 * 120.00807 * 179.72835 * 21 20 17 23 23 C 1.38350 * 119.99026 * 0.54407 * 22 21 20 24 24 Cl 1.73599 * 120.01230 * 179.70328 * 23 22 21 25 25 C 1.38355 * 119.97151 * 359.72838 * 23 22 21 26 26 C 1.38208 * 119.98457 * 359.97438 * 25 23 22 27 27 H 0.97007 * 120.00011 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 29 29 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 30 30 H 1.09002 * 109.46665 * 204.99493 * 11 10 9 31 31 H 1.08998 * 109.47564 * 324.99734 * 11 10 9 32 32 H 1.08000 * 126.57648 * 0.02562 * 13 12 11 33 33 H 1.08001 * 126.58267 * 180.17193 * 14 13 12 34 34 H 1.07995 * 125.79274 * 179.75059 * 15 14 13 35 35 H 1.08004 * 119.99355 * 359.97438 * 21 20 17 36 36 H 1.08005 * 120.00466 * 180.26730 * 22 21 20 37 37 H 1.07992 * 120.00257 * 179.97438 * 25 23 22 38 38 H 1.08003 * 119.99277 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.1402 -3.3024 1.2630 12 6 2.8181 -3.9225 1.6353 13 6 2.3946 -5.1475 1.2756 14 6 1.1104 -5.3194 1.8413 15 6 0.8224 -4.1860 2.5060 16 8 1.8604 -3.3435 2.3778 17 16 4.3930 -3.3147 -1.4297 18 8 4.2867 -4.7130 -1.2005 19 8 3.6673 -2.6361 -2.4456 20 6 6.0978 -2.9886 -1.7337 21 6 6.4692 -1.8688 -2.4543 22 6 7.8065 -1.6096 -2.6882 23 6 8.7729 -2.4769 -2.2108 24 17 10.4524 -2.1560 -2.5109 25 6 8.4002 -3.6005 -1.4946 26 6 7.0629 -3.8553 -1.2560 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8745 -0.6800 -0.8912 30 1 4.8899 -4.0856 1.1502 31 1 4.4512 -2.6119 2.0469 32 1 2.9333 -5.8633 0.6725 33 1 0.4800 -6.1920 1.7536 34 1 -0.0890 -3.9871 3.0501 35 1 5.7145 -1.1943 -2.8310 36 1 8.0969 -0.7324 -3.2474 37 1 9.1541 -4.2780 -1.1220 38 1 6.7718 -4.7326 -0.6973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004364032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = -21.853490 kcal Electronic energy + Delta-G solvation = -27318.243067 eV Core-core repulsion = 23281.206547 eV Total energy + Delta-G solvation = -4037.036521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 355.048 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81891 -39.45195 -36.88051 -36.85090 -36.12747 -35.38101 -32.60060 -32.18107 -31.41486 -31.19394 -30.10373 -27.63516 -24.96808 -23.35599 -23.20650 -22.05958 -21.01192 -20.01440 -18.96272 -17.91063 -17.24901 -17.10720 -16.49174 -16.33140 -16.06614 -15.43744 -14.92435 -14.86473 -14.33916 -14.18114 -13.90520 -13.87232 -13.64300 -12.97618 -12.83033 -12.52982 -12.28421 -12.16796 -12.05887 -11.99800 -11.95692 -11.73719 -11.61962 -11.51111 -11.33688 -11.18601 -10.78700 -10.67633 -10.52485 -10.30193 -9.55394 -9.38623 -9.34879 -9.22859 -8.57610 -8.43074 -7.82667 -6.05355 -4.03775 0.35092 0.75410 0.96146 1.68589 2.38153 3.02197 3.22408 3.26281 3.30203 3.33830 3.58909 3.68590 4.17175 4.31699 4.38652 4.53513 4.67539 4.98507 5.03915 5.17801 5.24119 5.27113 5.30934 5.58493 5.62720 5.63147 5.73755 5.76232 5.80174 5.85572 6.02630 6.39370 6.40770 6.55545 6.60182 6.73545 6.90897 7.13185 7.15467 7.55422 7.86135 8.49746 9.02738 9.52944 11.08216 Molecular weight = 355.05amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.004146 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.655058 B = 6752.316310 C = 8442.107190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.865 3.135 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.223 3.777 10 N -0.972 5.972 11 C 0.212 3.788 12 C -0.017 4.017 13 C -0.203 4.203 14 C -0.229 4.229 15 C -0.030 4.030 16 O -0.148 6.148 17 S 2.684 3.316 18 O -0.960 6.960 19 O -0.932 6.932 20 C -0.674 4.674 21 C -0.005 4.005 22 C -0.133 4.133 23 C 0.011 3.989 24 Cl -0.065 7.065 25 C -0.135 4.135 26 C -0.010 4.010 27 H 0.263 0.737 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.194 0.806 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.461 -6.840 0.787 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.810 5.810 11 C 0.086 3.914 12 C -0.070 4.070 13 C -0.224 4.224 14 C -0.248 4.248 15 C -0.099 4.099 16 O -0.041 6.041 17 S 2.772 3.228 18 O -0.950 6.950 19 O -0.922 6.922 20 C -0.757 4.757 21 C -0.024 4.024 22 C -0.152 4.152 23 C -0.016 4.016 24 Cl -0.035 7.035 25 C -0.154 4.154 26 C -0.030 4.030 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.211 0.789 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.988 -6.821 0.340 17.386 hybrid contribution 0.933 1.129 -0.094 1.468 sum 16.921 -5.693 0.246 17.855 Atomic orbital electron populations 1.69887 1.06109 1.26736 1.50375 1.24803 0.94688 0.98525 0.94612 0.87040 0.80465 0.84530 0.78801 1.19874 1.21005 1.18972 1.21263 0.88696 0.95137 1.50952 0.90057 1.19609 0.96747 0.76036 0.97588 1.57439 1.78109 1.25869 1.19624 1.19422 0.89468 0.95510 0.86978 1.22638 0.93073 0.92620 0.98683 1.21691 0.97188 0.98207 1.05285 1.21704 0.98317 1.00211 1.04597 1.23918 0.92456 0.89336 1.04199 1.84116 1.23119 1.41047 1.55863 1.02451 0.73274 0.73533 0.73576 1.93526 1.85966 1.30033 1.85510 1.93626 1.67994 1.74782 1.55806 1.31710 1.27672 1.04825 1.11530 1.21043 0.96298 0.93796 0.91296 1.21222 0.92087 1.00131 1.01783 1.21259 0.85425 0.96407 0.98485 1.98389 1.15381 1.95261 1.94518 1.21170 0.96987 0.97010 1.00258 1.20934 0.91426 0.96753 0.93849 0.92653 0.94449 0.95028 0.88213 0.88829 0.83193 0.84271 0.78922 0.82978 0.83968 0.84061 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.86 20.45 27.47 -169.99 -4.67 15.78 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.52 -14.26 9.45 -34.44 -0.33 -14.58 16 8 H 0.08 2.49 7.51 -52.49 -0.39 2.10 16 9 C 0.22 4.92 4.19 -5.19 -0.02 4.90 16 10 N -0.97 -18.18 2.79 -116.94 -0.33 -18.51 16 11 C 0.21 3.38 5.90 -5.20 -0.03 3.35 16 12 C -0.02 -0.32 6.00 -35.63 -0.21 -0.54 16 13 C -0.20 -3.70 10.52 -39.71 -0.42 -4.11 16 14 C -0.23 -3.93 10.91 -39.70 -0.43 -4.37 16 15 C -0.03 -0.53 12.09 29.42 0.36 -0.17 16 16 O -0.15 -3.02 10.51 5.70 0.06 -2.96 16 17 S 2.68 48.25 5.60 -107.50 -0.60 47.64 16 18 O -0.96 -17.40 15.42 -57.17 -0.88 -18.28 16 19 O -0.93 -20.46 16.25 -57.17 -0.93 -21.39 16 20 C -0.67 -9.49 5.97 -39.58 -0.24 -9.73 16 21 C -0.01 -0.07 9.52 -39.59 -0.38 -0.44 16 22 C -0.13 -1.49 9.83 -39.55 -0.39 -1.88 16 23 C 0.01 0.12 6.32 -39.50 -0.25 -0.13 16 24 Cl -0.06 -0.61 28.96 -51.86 -1.50 -2.11 16 25 C -0.13 -1.38 9.83 -39.55 -0.39 -1.76 16 26 C -0.01 -0.12 9.52 -39.59 -0.38 -0.50 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.04 0.78 7.06 -51.93 -0.37 0.42 16 29 H 0.03 0.68 7.04 -51.93 -0.37 0.32 16 30 H 0.10 1.20 7.61 -51.93 -0.40 0.81 16 31 H 0.09 1.31 8.00 -51.93 -0.42 0.89 16 32 H 0.15 2.57 7.51 -52.49 -0.39 2.17 16 33 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.19 2.75 8.06 -52.49 -0.42 2.32 16 35 H 0.15 1.99 7.61 -52.48 -0.40 1.59 16 36 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.43 7.62 -52.48 -0.40 1.03 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -34.49 357.72 -9.87 -44.36 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.99 Total: 4.11 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -3.20 Total: -27.91 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.45 Total: -44.64 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.75 Total: -42.63 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 48.25 SS G_CDS: -0.60 Total: 47.64 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.49 -9.87 -44.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004364032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.507 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds