Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 116.99991 * 2 1 4 4 C 1.38736 * 119.98685 * 359.73076 * 3 2 1 5 5 C 1.38073 * 120.01285 * 180.27093 * 4 3 2 6 6 C 1.38846 * 119.98506 * 0.02562 * 5 4 3 7 7 N 1.40243 * 120.01403 * 180.02562 * 6 5 4 8 8 C 1.36831 * 127.17885 * 114.66029 * 7 6 5 9 9 S 1.76201 * 126.39498 * 359.97438 * 8 7 6 10 10 C 1.76199 * 100.00294 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99625 * 0.02562 * 10 9 8 12 12 C 1.38679 * 120.00172 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00096 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46902 * 90.00080 * 14 12 10 16 16 H 1.48497 * 109.47053 * 210.00023 * 14 12 10 17 17 H 1.48498 * 109.46878 * 329.99929 * 14 12 10 18 18 N 1.31684 * 107.21293 * 179.84003 * 8 7 6 19 19 N 1.28509 * 110.05626 * 0.44254 * 18 8 7 20 20 C 1.31545 * 109.98267 * 359.72092 * 19 18 8 21 21 C 1.47716 * 126.45468 * 180.02562 * 20 19 18 22 22 C 1.40062 * 120.93605 * 164.72015 * 21 20 19 23 23 C 1.37898 * 118.98344 * 179.70635 * 22 21 20 24 24 N 1.31963 * 120.90991 * 0.58031 * 23 22 21 25 25 C 1.31963 * 122.07726 * 359.71526 * 24 23 22 26 26 C 1.37892 * 120.90506 * 359.97342 * 25 24 23 27 27 C 1.38848 * 119.97457 * 359.97438 * 6 5 4 28 28 C 1.38061 * 119.98996 * 0.02562 * 27 6 5 29 29 H 1.08999 * 109.47030 * 299.99879 * 1 2 3 30 30 H 1.09004 * 109.47086 * 59.99374 * 1 2 3 31 31 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.99647 * 0.26643 * 4 3 2 33 33 H 1.07991 * 120.00942 * 180.02562 * 5 4 3 34 34 H 0.96998 * 120.00127 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.50657 * 359.97328 * 22 21 20 36 36 H 1.08007 * 119.54430 * 180.31321 * 23 22 21 37 37 H 1.07999 * 119.55040 * 180.02562 * 25 24 23 38 38 H 1.08004 * 120.50394 * 180.02562 * 26 25 24 39 39 H 1.08002 * 120.00038 * 179.97438 * 27 6 5 40 40 H 1.07995 * 119.99744 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2903 2.3747 -0.0056 5 6 1.9166 3.6052 -0.0113 6 6 3.3031 3.6781 -0.0119 7 7 3.9399 4.9276 -0.0171 8 6 4.7208 5.4618 0.9714 9 16 5.1227 4.7042 2.5106 10 6 6.1317 5.9639 3.2176 11 1 6.3184 6.8764 2.6709 12 6 6.6860 5.7836 4.4759 13 7 6.4581 4.6717 5.1424 14 14 7.7564 7.1188 5.2250 15 1 6.9072 8.0539 6.0058 16 1 8.7649 6.4996 6.1220 17 1 8.4478 7.8643 4.1427 18 7 5.1184 6.6466 0.5564 19 7 4.6356 6.8902 -0.6094 20 6 3.9046 5.8742 -1.0144 21 6 3.1824 5.7694 -2.2987 22 6 2.7041 4.5354 -2.7571 23 6 2.0299 4.4848 -3.9590 24 7 1.8438 5.5754 -4.6783 25 6 2.2829 6.7565 -4.2867 26 6 2.9618 6.9003 -3.0951 27 6 4.0591 2.5134 -0.0062 28 6 3.4317 1.2836 -0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2118 2.3178 -0.0057 33 1 1.3282 4.5107 -0.0153 34 1 6.8455 4.5458 6.0226 35 1 2.8571 3.6379 -2.1761 36 1 1.6526 3.5388 -4.3186 37 1 2.1075 7.6227 -4.9075 38 1 3.3180 7.8703 -2.7807 39 1 5.1376 2.5697 -0.0071 40 1 4.0196 0.3776 0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004500830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = 109.110624 kcal Electronic energy + Delta-G solvation = -27788.877126 eV Core-core repulsion = 23889.963899 eV Total energy + Delta-G solvation = -3898.913228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 354.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39210 -40.31488 -39.89761 -37.91903 -34.20819 -33.24368 -32.75467 -31.48103 -31.21074 -29.37380 -29.32866 -27.43743 -25.83595 -24.35415 -23.74112 -23.11782 -22.81592 -21.44901 -20.72176 -18.77071 -18.31738 -17.65143 -16.72346 -16.49621 -16.16225 -16.04766 -15.76727 -15.31887 -15.21258 -15.01749 -14.76508 -14.06348 -13.93437 -13.78444 -13.71656 -13.65368 -13.18052 -13.07927 -12.86078 -12.24594 -11.82493 -11.58940 -11.40010 -11.23363 -11.21356 -11.13795 -10.84784 -10.63192 -10.30744 -10.16533 -10.05181 -9.60653 -9.47912 -9.32928 -9.20055 -8.96465 -8.73626 -8.27808 -6.89029 -6.56306 -4.31347 0.70527 1.01094 1.03413 1.13012 2.23780 2.36485 2.95633 3.10170 3.14654 3.19087 3.27723 3.35574 3.42265 3.86973 3.93761 4.24122 4.36788 4.51174 4.61302 4.70576 4.81367 4.87217 4.88283 4.92808 4.97174 4.99075 5.07720 5.17319 5.21055 5.35038 5.50941 5.57115 5.67986 5.74037 5.78478 5.89614 5.97685 6.01684 6.23907 6.34580 6.40316 6.48563 6.57790 7.04754 7.34095 7.48155 7.87463 8.27681 8.95503 9.18535 10.51475 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.003939 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.986687 B = 7107.028149 C = 9882.888809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.138 3.862 4 C -0.197 4.197 5 C -0.061 4.061 6 C 0.087 3.913 7 N -0.428 5.428 8 C 0.183 3.817 9 S 0.164 5.836 10 C -0.541 4.541 11 H 0.107 0.893 12 C 0.078 3.922 13 N -0.875 5.875 14 Si 0.933 3.067 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 N -0.301 5.301 19 N -0.251 5.251 20 C 0.161 3.839 21 C 0.057 3.943 22 C -0.170 4.170 23 C 0.103 3.897 24 N -0.490 5.490 25 C 0.100 3.900 26 C -0.141 4.141 27 C -0.058 4.058 28 C -0.135 4.135 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.276 0.724 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.492 -8.298 -12.714 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.092 3.908 4 C -0.216 4.216 5 C -0.081 4.081 6 C -0.004 4.004 7 N -0.122 5.122 8 C -0.184 4.184 9 S 0.398 5.602 10 C -0.689 4.689 11 H 0.125 0.875 12 C -0.132 4.132 13 N -0.509 5.509 14 Si 0.758 3.242 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.189 1.189 18 N -0.148 5.148 19 N -0.093 5.093 20 C -0.103 4.103 21 C 0.046 3.954 22 C -0.192 4.192 23 C -0.054 4.054 24 N -0.200 5.200 25 C -0.056 4.056 26 C -0.164 4.164 27 C -0.077 4.077 28 C -0.154 4.154 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.351 -8.347 -12.747 19.613 hybrid contribution 0.585 0.934 1.009 1.495 sum -11.765 -7.412 -11.738 18.197 Atomic orbital electron populations 1.23108 0.78174 1.04121 1.01608 1.86102 1.21564 1.26573 1.88367 1.19084 0.92294 0.84216 0.95199 1.21058 1.00352 0.91252 1.08950 1.20932 0.92486 0.98228 0.96419 1.17384 0.91288 0.83139 1.08638 1.43529 1.40455 1.13793 1.14473 1.28750 0.95098 0.95315 0.99263 1.83660 1.57067 1.21787 0.97662 1.23288 1.34624 1.05823 1.05188 0.87535 1.25083 0.95829 0.96849 0.95398 1.69935 1.42673 1.24730 1.13601 0.85910 0.79236 0.80171 0.78900 1.19831 1.20567 1.18889 1.74888 1.23110 1.12063 1.04698 1.74249 1.08302 1.20254 1.06531 1.22444 1.06553 0.88879 0.92445 1.17794 0.94107 0.94014 0.89441 1.22456 1.00306 0.97966 0.98504 1.22554 0.95166 0.97037 0.90619 1.67632 1.19313 0.99107 1.33908 1.22666 0.93774 0.95334 0.93803 1.22223 0.99447 0.99415 0.95270 1.21072 1.00949 0.90050 0.95661 1.20293 0.91310 0.98167 1.05673 0.92354 0.92464 0.88113 0.84509 0.85188 0.91444 0.84454 0.82686 0.82325 0.83616 0.84026 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.14 10.50 -19.58 -0.21 -3.35 16 3 C 0.14 1.54 6.69 -39.21 -0.26 1.28 16 4 C -0.20 -2.10 9.03 -39.46 -0.36 -2.45 16 5 C -0.06 -0.80 8.05 -39.42 -0.32 -1.11 16 6 C 0.09 1.36 3.47 -83.56 -0.29 1.07 16 7 N -0.43 -8.18 2.86 -58.09 -0.17 -8.35 16 8 C 0.18 4.21 8.00 -87.73 -0.70 3.51 16 9 S 0.16 4.00 21.58 -107.50 -2.32 1.68 16 10 C -0.54 -14.82 9.37 30.90 0.29 -14.53 16 11 H 0.11 3.01 6.92 -52.49 -0.36 2.65 16 12 C 0.08 2.08 5.49 -17.48 -0.10 1.99 16 13 N -0.87 -23.87 13.22 55.48 0.73 -23.14 16 14 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 18 N -0.30 -7.42 11.03 30.80 0.34 -7.08 16 19 N -0.25 -5.54 12.06 32.60 0.39 -5.15 16 20 C 0.16 3.06 7.70 -153.61 -1.18 1.88 16 21 C 0.06 0.87 5.91 -104.65 -0.62 0.26 16 22 C -0.17 -2.20 8.59 -39.02 -0.34 -2.53 16 23 C 0.10 1.17 11.17 -17.62 -0.20 0.98 16 24 N -0.49 -6.08 10.35 -13.37 -0.14 -6.21 16 25 C 0.10 1.16 11.17 -17.62 -0.20 0.96 16 26 C -0.14 -1.88 9.80 -39.02 -0.38 -2.26 16 27 C -0.06 -0.82 9.85 -39.42 -0.39 -1.20 16 28 C -0.14 -1.61 9.98 -39.46 -0.39 -2.00 16 29 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 30 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.08 6.29 -52.49 -0.33 0.75 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.14 1.73 4.87 -52.49 -0.26 1.47 16 36 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.15 1.88 8.02 -52.48 -0.42 1.46 16 39 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -32.40 364.71 -9.16 -41.56 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.84 Total: 1.74 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -4.44 Total: -13.04 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.16 Total: -49.93 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.21 Total: -3.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -2.32 Total: 1.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.40 -9.16 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004500830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.671 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds