Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21280 * 119.99863 * 2 1 4 4 N 1.34777 * 120.00320 * 179.97438 * 2 1 3 5 5 C 1.39301 * 119.99955 * 180.02562 * 4 2 1 6 6 N 1.31180 * 128.71809 * 0.16304 * 5 4 2 7 7 O 1.20840 * 109.50880 * 180.25950 * 6 5 4 8 8 N 1.20872 * 116.11786 * 359.72541 * 7 6 5 9 9 C 1.31610 * 109.31207 * 359.97438 * 8 7 6 10 10 C 1.47976 * 128.75272 * 179.97438 * 9 8 7 11 11 N 1.30997 * 125.10648 * 180.02562 * 10 9 8 12 12 C 1.35420 * 109.63810 * 179.97438 * 11 10 9 13 13 C 1.39927 * 133.41350 * 180.02562 * 12 11 10 14 14 C 1.36549 * 119.88775 * 179.97438 * 13 12 11 15 15 C 1.38818 * 120.69105 * 0.02562 * 14 13 12 16 16 C 1.37858 * 120.47239 * 359.97438 * 15 14 13 17 17 C 1.38844 * 119.71725 * 359.71664 * 16 15 14 18 18 N 1.36885 * 125.10225 * 0.02763 * 10 9 8 19 19 C 1.46499 * 126.39974 * 359.97438 * 18 10 9 20 20 C 1.53000 * 109.46840 * 90.02890 * 19 18 10 21 21 C 1.53001 * 109.46886 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47291 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99920 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00428 * 179.97438 * 22 21 20 25 25 N 1.31520 * 120.00162 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99868 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47023 * 90.00014 * 26 24 22 28 28 H 1.48496 * 109.47251 * 210.00457 * 26 24 22 29 29 H 1.48498 * 109.47139 * 330.00202 * 26 24 22 30 30 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47545 * 300.00321 * 1 2 3 32 32 H 1.08999 * 109.47110 * 60.00572 * 1 2 3 33 33 H 0.96994 * 119.99795 * 0.02562 * 4 2 1 34 34 H 1.08004 * 120.05937 * 0.02562 * 13 12 11 35 35 H 1.08006 * 119.65803 * 180.02562 * 14 13 12 36 36 H 1.08002 * 119.76221 * 179.97438 * 15 14 13 37 37 H 1.08000 * 120.13853 * 179.97438 * 16 15 14 38 38 H 1.09002 * 109.47391 * 330.02559 * 19 18 10 39 39 H 1.09001 * 109.46813 * 210.02616 * 19 18 10 40 40 H 1.09001 * 109.47194 * 299.99493 * 20 19 18 41 41 H 1.08992 * 109.47399 * 59.99666 * 20 19 18 42 42 H 1.09001 * 109.47109 * 299.99380 * 21 20 19 43 43 H 1.09002 * 109.47508 * 59.99571 * 21 20 19 44 44 H 0.96996 * 119.99309 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5739 -1.1671 0.0011 6 7 4.3944 -0.1435 0.0041 7 8 5.5355 -0.5410 -0.0017 8 7 5.6810 -1.7409 -0.0035 9 6 4.5004 -2.3225 0.0021 10 6 4.1794 -3.7671 0.0020 11 7 2.9699 -4.2700 0.0073 12 6 3.0393 -5.6225 0.0048 13 6 2.0736 -6.6350 0.0077 14 6 2.4606 -7.9445 0.0032 15 6 3.8062 -8.2856 -0.0036 16 6 4.7758 -7.3056 -0.0065 17 6 4.4028 -5.9682 -0.0086 18 7 5.1019 -4.7784 -0.0037 19 6 6.5589 -4.6260 -0.0112 20 6 7.0737 -4.5749 1.4287 21 6 8.5953 -4.4151 1.4209 22 6 9.1023 -4.3642 2.8391 23 1 8.4086 -4.4380 3.6636 24 6 10.4518 -4.2234 3.0842 25 7 10.8942 -4.1785 4.3219 26 14 11.6518 -4.0966 1.6582 27 1 11.8242 -2.6704 1.2818 28 1 12.9631 -4.6639 2.0628 29 1 11.1219 -4.8545 0.4964 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6960 -2.0072 0.0005 34 1 1.0238 -6.3813 0.0126 35 1 1.7120 -8.7230 0.0051 36 1 4.0955 -9.3261 -0.0066 37 1 5.8212 -7.5771 -0.0114 38 1 6.8250 -3.7024 -0.5252 39 1 7.0101 -5.4727 -0.5286 40 1 6.6225 -3.7282 1.9460 41 1 6.8076 -5.4985 1.9427 42 1 9.0469 -5.2616 0.9035 43 1 8.8611 -3.4913 0.9070 44 1 11.8437 -4.0798 4.4942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004536320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = 155.596496 kcal Electronic energy + Delta-G solvation = -30868.540422 eV Core-core repulsion = 26599.297286 eV Total energy + Delta-G solvation = -4269.243136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.90014 -42.34534 -40.30662 -37.70196 -36.16517 -35.57131 -34.78254 -33.34725 -33.32053 -31.70786 -30.36637 -30.19678 -29.62187 -27.38776 -25.80448 -24.32222 -23.70453 -22.49703 -22.20046 -20.94755 -20.47104 -20.17958 -19.08663 -19.03746 -17.67804 -17.39755 -17.14685 -16.93737 -16.56617 -15.84865 -15.73096 -15.61755 -14.72496 -14.47266 -14.42324 -14.17197 -13.99672 -13.89634 -13.25579 -13.11894 -13.00674 -12.80663 -12.53387 -12.31831 -12.25830 -12.07735 -12.02081 -11.79295 -11.69031 -11.43837 -11.09451 -10.92601 -10.68421 -10.55426 -10.30609 -10.13557 -9.95487 -9.77557 -9.49420 -9.31463 -8.60439 -8.39353 -8.21271 -6.10434 -4.09986 0.26520 1.06563 1.28413 1.40223 1.93579 2.26114 2.29491 2.75793 2.81940 3.26982 3.32597 3.34423 3.35200 3.70012 3.75241 4.05493 4.28520 4.39015 4.43968 4.60224 4.72879 4.75752 4.83440 4.90165 4.93415 5.19098 5.22926 5.23489 5.29846 5.34772 5.42772 5.53997 5.57664 5.72339 5.89339 6.14916 6.23715 6.27435 6.34370 6.38259 6.61376 6.64858 6.72394 6.87087 7.09385 7.22924 7.49659 7.53021 7.68572 8.44058 8.45129 8.92921 9.50569 11.02880 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.003651 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.870878 B = 7667.055070 C =10822.413696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.494 6.494 4 N -0.617 5.617 5 C 0.272 3.728 6 N -0.341 5.341 7 O 0.347 5.653 8 N -0.307 5.307 9 C 0.052 3.948 10 C 0.348 3.652 11 N -0.477 5.477 12 C 0.050 3.950 13 C -0.064 4.064 14 C -0.127 4.127 15 C -0.099 4.099 16 C -0.101 4.101 17 C 0.063 3.937 18 N -0.455 5.455 19 C 0.096 3.904 20 C -0.111 4.111 21 C -0.007 4.007 22 C -0.522 4.522 23 H 0.071 0.929 24 C 0.069 3.931 25 N -0.901 5.901 26 Si 0.880 3.120 27 H -0.275 1.275 28 H -0.287 1.287 29 H -0.266 1.266 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.437 0.563 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.038 -2.756 -12.947 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.293 3.707 3 O -0.363 6.363 4 N -0.274 5.274 5 C 0.013 3.987 6 N -0.075 5.075 7 O 0.127 5.873 8 N -0.026 5.026 9 C -0.114 4.114 10 C 0.086 3.914 11 N -0.201 5.201 12 C -0.071 4.071 13 C -0.083 4.083 14 C -0.147 4.147 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.048 4.048 18 N -0.142 5.142 19 C -0.025 4.025 20 C -0.149 4.149 21 C -0.045 4.045 22 C -0.560 4.560 23 H 0.089 0.911 24 C -0.133 4.133 25 N -0.539 5.539 26 Si 0.707 3.293 27 H -0.200 1.200 28 H -0.213 1.213 29 H -0.191 1.191 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.279 0.721 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.081 -0.698 -12.836 25.551 hybrid contribution 0.677 -1.401 -0.482 1.629 sum -21.404 -2.098 -13.318 25.296 Atomic orbital electron populations 1.21832 0.88994 1.05261 1.06208 1.21379 0.91361 0.82531 0.75436 1.90871 1.70083 1.30426 1.44963 1.43059 0.99950 1.12266 1.72082 1.22529 0.88280 0.86897 1.00986 1.75682 0.90325 1.19898 1.21641 1.85154 1.22412 1.15804 1.63959 1.75492 1.20769 0.93016 1.13373 1.22165 0.87564 0.91468 1.10242 1.18967 0.84667 0.84928 1.02878 1.70152 1.19260 1.08166 1.22479 1.18885 0.91851 0.89776 1.06549 1.19975 0.98080 0.90388 0.99900 1.20654 0.96171 0.95646 1.02241 1.20942 0.92384 0.98875 0.99721 1.20113 1.00591 0.88423 1.03074 1.18937 0.92159 0.87958 1.05754 1.45547 1.08164 1.03881 1.56637 1.22516 0.73466 1.04483 1.02010 1.21826 0.99510 1.02122 0.91448 1.19492 0.89737 0.96610 0.98662 1.21011 0.93228 1.50809 0.90988 0.91125 1.25014 0.98334 0.94418 0.95543 1.69911 1.14738 1.50268 1.18987 0.86781 0.80543 0.78877 0.83109 1.20022 1.21308 1.19069 0.89683 0.87712 0.87777 0.72138 0.85247 0.85258 0.85063 0.85378 0.88162 0.88935 0.92126 0.92038 0.96414 0.96367 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 10.39 36.00 0.37 -0.39 16 2 C 0.51 5.18 7.90 -10.99 -0.09 5.09 16 3 O -0.49 -7.37 15.99 5.56 0.09 -7.28 16 4 N -0.62 -6.51 5.42 -10.92 -0.06 -6.57 16 5 C 0.27 3.78 8.34 -152.04 -1.27 2.51 16 6 N -0.34 -5.30 10.72 31.62 0.34 -4.96 16 7 O 0.35 5.32 11.64 27.27 0.32 5.64 16 8 N -0.31 -4.82 10.47 33.66 0.35 -4.46 16 9 C 0.05 0.76 7.49 -79.93 -0.60 0.16 16 10 C 0.35 5.17 7.80 -154.58 -1.21 3.96 16 11 N -0.48 -6.48 10.65 -8.70 -0.09 -6.57 16 12 C 0.05 0.66 7.22 -84.73 -0.61 0.05 16 13 C -0.06 -0.65 10.05 -39.56 -0.40 -1.04 16 14 C -0.13 -1.10 9.96 -39.98 -0.40 -1.50 16 15 C -0.10 -0.93 10.03 -39.51 -0.40 -1.33 16 16 C -0.10 -1.20 10.05 -39.50 -0.40 -1.60 16 17 C 0.06 0.88 6.87 -83.94 -0.58 0.30 16 18 N -0.46 -6.86 2.83 -111.68 -0.32 -7.17 16 19 C 0.10 1.49 5.75 -4.04 -0.02 1.47 16 20 C -0.11 -2.13 5.48 -26.73 -0.15 -2.28 16 21 C -0.01 -0.16 4.04 -27.88 -0.11 -0.27 16 22 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 23 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 24 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 25 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 26 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 30 H 0.08 0.19 7.91 -51.93 -0.41 -0.22 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.44 3.59 8.00 -40.82 -0.33 3.27 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.10 1.55 6.54 -51.93 -0.34 1.21 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 43 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -35.21 382.86 -9.01 -44.21 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.24 Total: -0.37 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -6.27 Total: -8.04 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 1.00 Total: -56.65 kcal Atomic # 8 Polarization: -2.05 SS G_CDS: 0.41 Total: -1.64 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.21 -9.01 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004536320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.811 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds