Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47381 * 2 1 4 4 O 1.42900 * 109.47292 * 239.99797 * 2 1 3 5 5 C 1.35898 * 117.00078 * 155.10772 * 4 2 1 6 6 C 1.38738 * 120.05560 * 5.08164 * 5 4 2 7 7 C 1.38147 * 119.94102 * 179.74004 * 6 5 4 8 8 C 1.38264 * 120.05592 * 0.51074 * 7 6 5 9 9 C 1.38268 * 120.11664 * 359.76479 * 8 7 6 10 10 C 1.38147 * 120.05001 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.47427 * 119.99768 * 2 1 3 12 12 O 1.21318 * 119.99903 * 113.05522 * 11 2 1 13 13 N 1.34777 * 119.99881 * 293.06042 * 11 2 1 14 14 N 1.40108 * 119.99719 * 185.00952 * 13 11 2 15 15 C 1.29845 * 119.99652 * 185.74158 * 14 13 11 16 16 C 1.47310 * 120.00029 * 9.15110 * 15 14 13 17 17 C 1.39681 * 120.19971 * 25.96728 * 16 15 14 18 18 C 1.37884 * 119.90809 * 180.02562 * 17 16 15 19 19 C 1.38530 * 120.31419 * 0.02562 * 18 17 16 20 20 C 1.38115 * 120.40728 * 359.68033 * 19 18 17 21 21 C 1.38728 * 120.08196 * 0.60008 * 20 19 18 22 22 O 1.35604 * 120.15680 * 179.69736 * 21 20 19 23 23 C 1.34806 * 117.00127 * 5.78785 * 22 21 20 24 24 H 1.07996 * 119.99803 * 5.16512 * 23 22 21 25 25 C 1.38641 * 119.99702 * 184.89446 * 23 22 21 26 26 N 1.31560 * 120.00441 * 355.21168 * 25 23 22 27 27 Si 1.86801 * 119.99679 * 175.21857 * 25 23 22 28 28 H 1.48497 * 109.47437 * 64.99845 * 27 25 23 29 29 H 1.48502 * 109.47003 * 184.99837 * 27 25 23 30 30 H 1.48503 * 109.47250 * 304.99624 * 27 25 23 31 31 H 1.09003 * 109.47024 * 295.38831 * 1 2 3 32 32 H 1.09000 * 109.47105 * 55.38639 * 1 2 3 33 33 H 1.09005 * 109.46727 * 175.38917 * 1 2 3 34 34 H 1.07992 * 120.02933 * 359.97438 * 6 5 4 35 35 H 1.07995 * 119.97357 * 180.23202 * 7 6 5 36 36 H 1.08002 * 119.94625 * 179.74436 * 8 7 6 37 37 H 1.07997 * 119.97525 * 179.97438 * 9 8 7 38 38 H 1.08001 * 120.02750 * 179.97438 * 10 9 8 39 39 H 0.97000 * 120.00283 * 5.01409 * 13 11 2 40 40 H 1.08002 * 119.99819 * 189.14774 * 15 14 13 41 41 H 1.08003 * 120.04630 * 0.03523 * 17 16 15 42 42 H 1.07996 * 119.84631 * 179.97438 * 18 17 16 43 43 H 1.08005 * 119.79158 * 179.97438 * 19 18 17 44 44 H 1.07996 * 119.95550 * 180.30022 * 20 19 18 45 45 H 0.96995 * 120.00367 * 174.99725 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.2476 -0.3401 -1.6082 6 6 4.0336 0.5369 -0.8748 7 6 5.2971 0.8702 -1.3230 8 6 5.7743 0.3389 -2.5069 9 6 4.9908 -0.5309 -3.2427 10 6 3.7287 -0.8715 -2.7960 11 6 2.0324 -0.7103 1.2305 12 8 2.6225 -1.7649 1.1236 13 7 1.8260 -0.1741 2.4496 14 7 2.3828 -0.7788 3.5842 15 6 2.0937 -0.3289 4.7675 16 6 1.0320 0.6787 4.9333 17 6 -0.0037 0.7681 4.0002 18 6 -0.9941 1.7138 4.1610 19 6 -0.9673 2.5773 5.2440 20 6 0.0473 2.4963 6.1776 21 6 1.0555 1.5549 6.0291 22 8 2.0557 1.4782 6.9416 23 6 1.9500 2.2625 8.0329 24 1 1.0581 2.8506 8.1909 25 6 2.9841 2.3098 8.9552 26 7 4.0269 1.5200 8.8155 27 14 2.8966 3.4951 10.3963 28 1 1.7680 3.1140 11.2830 29 1 4.1681 3.4387 11.1615 30 1 2.6843 4.8750 9.8902 31 1 -0.3633 0.4406 0.9284 32 1 -0.3633 0.5838 -0.8458 33 1 -0.3633 -1.0244 -0.0826 34 1 3.6595 0.9556 0.0477 35 1 5.9108 1.5498 -0.7506 36 1 6.7608 0.6039 -2.8578 37 1 5.3657 -0.9442 -4.1673 38 1 3.1168 -1.5506 -3.3712 39 1 1.2919 0.6304 2.5416 40 1 2.6316 -0.6936 5.6301 41 1 -0.0287 0.0973 3.1542 42 1 -1.7941 1.7824 3.4388 43 1 -1.7472 3.3151 5.3615 44 1 0.0584 3.1699 7.0217 45 1 4.7825 1.6031 9.4179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004544385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = 16.398265 kcal Electronic energy + Delta-G solvation = -30182.464193 eV Core-core repulsion = 25940.318129 eV Total energy + Delta-G solvation = -4242.146065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.84385 -39.72214 -38.97091 -37.56451 -36.95000 -35.74121 -33.18659 -32.58399 -31.55783 -31.04906 -29.98868 -29.54136 -28.97495 -25.64806 -25.27632 -23.53405 -22.62420 -22.35711 -21.95684 -20.72714 -20.06299 -18.62524 -18.37353 -17.72848 -17.42598 -16.43005 -16.09216 -15.87722 -15.23542 -15.17382 -14.85253 -14.80854 -14.45345 -14.26094 -14.11112 -13.88282 -13.62338 -13.56159 -13.55042 -13.12606 -12.85347 -12.76458 -12.62916 -12.06838 -11.93253 -11.84910 -11.77825 -11.68921 -11.52322 -11.37855 -11.08836 -11.02041 -10.92581 -10.64377 -10.15144 -9.75092 -9.53819 -9.14018 -9.11823 -8.99336 -8.33667 -8.12808 -7.44542 -6.70682 -4.29862 1.19842 1.28788 1.30909 1.97402 2.37674 2.55169 2.98416 2.99524 3.00826 3.04711 3.16275 3.66274 3.75703 4.23846 4.43149 4.48664 4.53240 4.73896 4.76790 4.78815 4.87183 4.98967 5.09276 5.14105 5.23210 5.24372 5.31210 5.37771 5.43512 5.51420 5.57495 5.71468 5.73886 5.85042 5.87328 6.15003 6.26452 6.30000 6.36610 6.38844 6.46022 6.57759 6.79190 6.86388 7.01142 7.06356 7.14691 7.29342 7.43000 7.69304 7.77331 8.60614 8.73023 9.34718 10.44735 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.002354 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.734299 B =11893.956949 C =13084.541276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.101 0.899 4 O -0.283 6.283 5 C 0.134 3.866 6 C -0.204 4.204 7 C -0.077 4.077 8 C -0.160 4.160 9 C -0.083 4.083 10 C -0.150 4.150 11 C 0.498 3.502 12 O -0.494 6.494 13 N -0.587 5.587 14 N -0.266 5.266 15 C 0.166 3.834 16 C -0.198 4.198 17 C -0.083 4.083 18 C -0.213 4.213 19 C -0.056 4.056 20 C -0.227 4.227 21 C 0.179 3.821 22 O -0.158 6.158 23 C -0.397 4.397 24 H 0.096 0.904 25 C 0.046 3.954 26 N -0.848 5.848 27 Si 0.941 3.059 28 H -0.268 1.268 29 H -0.276 1.276 30 H -0.268 1.268 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.391 0.609 40 H 0.187 0.813 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.133 0.867 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 2.633 -17.009 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.118 0.882 4 O -0.195 6.195 5 C 0.089 3.911 6 C -0.222 4.222 7 C -0.095 4.095 8 C -0.178 4.178 9 C -0.101 4.101 10 C -0.169 4.169 11 C 0.283 3.717 12 O -0.365 6.365 13 N -0.336 5.336 14 N -0.070 5.070 15 C -0.042 4.042 16 C -0.202 4.202 17 C -0.103 4.103 18 C -0.232 4.232 19 C -0.075 4.075 20 C -0.246 4.246 21 C 0.120 3.880 22 O -0.058 6.058 23 C -0.473 4.473 24 H 0.113 0.887 25 C -0.161 4.161 26 N -0.480 5.480 27 Si 0.765 3.235 28 H -0.193 1.193 29 H -0.201 1.201 30 H -0.193 1.193 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.237 0.763 40 H 0.203 0.797 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.151 0.849 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.757 0.820 -17.629 18.043 hybrid contribution -0.779 1.853 1.534 2.528 sum -4.536 2.673 -16.095 16.934 Atomic orbital electron populations 1.21880 0.89712 1.04820 1.04100 1.22300 0.97139 0.96432 0.83208 0.88160 1.86174 1.29462 1.62683 1.41167 1.19034 0.84529 0.94069 0.93450 1.21247 0.96717 1.02738 1.01541 1.20962 0.94539 0.98293 0.95699 1.21061 1.00490 1.00098 0.96183 1.20950 0.93027 0.96694 0.99395 1.20401 0.97233 1.03673 0.95559 1.20976 0.80676 0.86592 0.83487 1.90740 1.38818 1.21185 1.85790 1.47620 1.53315 1.28165 1.04536 1.75435 1.19131 1.19117 0.93333 1.25365 0.92593 0.91624 0.94646 1.18584 0.99999 1.02661 0.98999 1.21160 0.93966 0.97725 0.97475 1.20534 1.00975 1.00591 1.01108 1.20945 0.96537 0.96870 0.93164 1.21226 0.97498 1.02997 1.02883 1.19352 0.88332 0.91911 0.88366 1.83898 1.37881 1.56836 1.27182 1.21348 1.05122 1.24484 0.96317 0.88686 1.25334 0.94918 0.97261 0.98582 1.70011 1.06225 1.33798 1.37995 0.85769 0.78431 0.79647 0.79630 1.19308 1.20050 1.19276 0.89768 0.89882 0.90298 0.85935 0.85687 0.85909 0.85378 0.85170 0.76313 0.79679 0.86056 0.86937 0.86892 0.84891 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.54 37.16 0.35 -0.95 16 2 C 0.07 0.86 2.66 -27.88 -0.07 0.79 16 3 H 0.10 1.01 6.30 -51.93 -0.33 0.68 16 4 O -0.28 -3.90 9.37 -39.23 -0.37 -4.27 16 5 C 0.13 1.82 6.50 -39.21 -0.26 1.57 16 6 C -0.20 -2.69 8.71 -39.43 -0.34 -3.03 16 7 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 8 C -0.16 -1.64 10.04 -39.56 -0.40 -2.04 16 9 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 10 C -0.15 -1.76 9.99 -39.43 -0.39 -2.15 16 11 C 0.50 8.17 6.36 -10.98 -0.07 8.10 16 12 O -0.49 -10.32 16.77 -14.29 -0.24 -10.56 16 13 N -0.59 -9.61 4.73 31.22 0.15 -9.47 16 14 N -0.27 -5.15 11.12 32.13 0.36 -4.79 16 15 C 0.17 3.17 10.85 -14.70 -0.16 3.01 16 16 C -0.20 -3.70 5.61 -104.88 -0.59 -4.29 16 17 C -0.08 -1.29 7.66 -39.17 -0.30 -1.59 16 18 C -0.21 -3.03 10.03 -39.60 -0.40 -3.43 16 19 C -0.06 -0.86 10.03 -39.52 -0.40 -1.25 16 20 C -0.23 -4.22 9.13 -39.45 -0.36 -4.58 16 21 C 0.18 3.77 6.66 -38.61 -0.26 3.51 16 22 O -0.16 -3.94 9.11 0.56 0.01 -3.93 16 23 C -0.40 -9.89 9.44 30.88 0.29 -9.60 16 24 H 0.10 2.16 5.30 -52.49 -0.28 1.88 16 25 C 0.05 1.15 5.49 -17.52 -0.10 1.05 16 26 N -0.85 -22.75 13.67 55.48 0.76 -21.99 16 27 Si 0.94 18.70 29.56 -169.99 -5.02 13.67 16 28 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 29 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 30 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 31 H 0.08 0.64 7.34 -51.93 -0.38 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.12 1.59 5.69 -52.49 -0.30 1.29 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.39 5.57 4.67 -182.59 -0.85 4.72 16 40 H 0.19 3.58 7.90 -52.49 -0.41 3.16 16 41 H 0.12 1.70 5.21 -52.48 -0.27 1.43 16 42 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.13 2.46 5.71 -52.49 -0.30 2.16 16 45 H 0.28 6.85 8.32 -40.82 -0.34 6.51 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -32.00 385.50 -8.43 -40.43 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.64 Total: 12.51 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -4.24 Total: -17.41 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.26 Total: -36.25 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.60 Total: -18.76 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.00 -8.43 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004544385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.827 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds